2P045 Coarse-grained model study of ligand-dependent reaction activity of PPARγ(01B. Protein: Structure & Function,Poster)

Tomo Matsubara; Hiraku Nishimori; Akinori Awazu

doi:10.2142/biophys.53.s166_3

2P045 Coarse-grained model study of ligand-dependent reaction activity of PPARγ(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_3 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Tomo Matsubara ◽

Hiraku Nishimori ◽

Akinori Awazu

Keyword(s):

Protein Structure ◽

Structure Function ◽

Coarse Grained ◽

Coarse Grained Model ◽

Model Study

Download Full-text

2P044 Comparative simulations of protein-ligand binding processes using the MARTINI coarse-grained force field(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_2 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Tatsuki Negami ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Force Field ◽

Structure Function ◽

Coarse Grained

Download Full-text

3P028 Interactions of MEK1 with ERK2 in mammalian MAPK pathway studied by coarse-grained molecular simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Ryo Kanada ◽

Shoji Takada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Mapk Pathway ◽

Molecular Simulations ◽

Coarse Grained ◽

Biophysical Society

Download Full-text

Physico-chemical approach to protein structure prediction by coarse-grained model

Seibutsu Butsuri ◽

10.2142/biophys.41.s15_2 ◽

2001 ◽

Vol 41 (supplement) ◽

pp. S15

Author(s):

Y. Fujitsuka ◽

H. Fukunishi ◽

S. Takada

Keyword(s):

Protein Structure ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Coarse Grained ◽

Coarse Grained Model ◽

Chemical Approach ◽

Physico Chemical

Download Full-text

3P027 Classification of Mechanical Communication in Proteins: A Coarse-Grained Study(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Yuichi Togashi

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society

Download Full-text

2P046 Screening for Mechanical Communication in Proteins by Coarse-Grained Molecular Dynamics(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_4 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Yuichi Togashi

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Coarse Grained ◽

Coarse Grained Molecular Dynamics

Download Full-text

2P032 The factors determining protein-ligand binding processes revealed by comparative coarse-grained simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s200_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S200

Author(s):

Tatsuki Negami ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Structure Function ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society ◽

Coarse Grained Simulations

Download Full-text

3D structure stability of the HIV-1 TAR RNA in ion solutions: A coarse-grained model study

The Journal of Chemical Physics ◽

10.1063/1.5126128 ◽

2019 ◽

Vol 151 (16) ◽

pp. 165101

Author(s):

Ben-Gong Zhang ◽

Hua-Hai Qiu ◽

Jian Jiang ◽

Jie Liu ◽

Ya-Zhou Shi

Keyword(s):

3D Structure ◽

Coarse Grained ◽

Structure Stability ◽

Coarse Grained Model ◽

Model Study ◽

Tar Rna ◽

Hiv 1

Download Full-text

Sequence-based protein structure optimization using enhanced simulated annealing algorithm on a coarse-grained model

Journal of Molecular Modeling ◽

10.1007/s00894-020-04490-6 ◽

2020 ◽

Vol 26 (9) ◽

Author(s):

Lizhong Zhang ◽

He Ma ◽

Wei Qian ◽

Haiyan Li

Keyword(s):

Simulated Annealing ◽

Protein Structure ◽

Simulated Annealing Algorithm ◽

Structure Optimization ◽

Coarse Grained ◽

Coarse Grained Model ◽

Annealing Algorithm ◽

Protein Structure Optimization

Download Full-text

2P047 Docking dynamics of MAP kinase : MEK1-ERK2 complex system studied by coarse-grained simulation(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_5 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Ryo Kanada ◽

Shoji Takada

Keyword(s):

Complex System ◽

Protein Structure ◽

Structure Function ◽

Map Kinase ◽

Coarse Grained

Download Full-text

3P022 Coarse-grained Generalized Born and surface area models and its application to protein docking(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s252_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S252

Author(s):

Le Chang ◽

Wenfei Li ◽

Naoto Hori ◽

Shoji Takada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Surface Area ◽

Annual Meeting ◽

Protein Docking ◽

Coarse Grained ◽

Generalized Born ◽

Biophysical Society

Download Full-text