1PT171 Co-translation folding of a three-domain protein surf1 studied by coarse-grained molecular simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Tomohiro Tanaka; Naoto Hori; Syoji Takada

doi:10.2142/biophys.52.s98_2

1PT171 Co-translation folding of a three-domain protein surf1 studied by coarse-grained molecular simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s98_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S98

Author(s):

Tomohiro Tanaka ◽

Naoto Hori ◽

Syoji Takada

Keyword(s):

Annual Meeting ◽

Molecular Simulations ◽

Coarse Grained ◽

Biophysical Society ◽

Domain Protein

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3P028 Interactions of MEK1 with ERK2 in mammalian MAPK pathway studied by coarse-grained molecular simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Ryo Kanada ◽

Shoji Takada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Mapk Pathway ◽

Molecular Simulations ◽

Coarse Grained ◽

Biophysical Society

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3PT007 Movement of T4 sliding clamp on DNA studied by coarse-grained molecular simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s156_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S156

Author(s):

Itaru Narihara ◽

Tsuyoshi Terakawa ◽

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Molecular Simulations ◽

Coarse Grained ◽

Sliding Clamp ◽

Biophysical Society

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3C0948 Dynamical motions of tRNA and ribosome complex during translation elongation studied by coarse-grained molecular simulations(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s60_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S60

Author(s):

Naoto Hori ◽

Shoji Takada

Keyword(s):

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Molecular Simulations ◽

Coarse Grained ◽

Translation Elongation ◽

Biophysical Society

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1P126 Nucleosome unwrapping dynamic studied by coarse-grained molecular simulations(Nucleic acid binding proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s41_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S41

Author(s):

Masumi Takayama ◽

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Molecular Simulations ◽

Coarse Grained ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

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1P-074 Sampling enhancement for all-atom simulation using coarse-grained model(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s32_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S32

Author(s):

Hiromitsu Shimoyama ◽

Yasushige Yonezawa ◽

Haruki Nakamura

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

Coarse Grained Model ◽

Biophysical Society

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1E1524 Development of a scoring function for domain-domain docking to predict multi-domain protein structures(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s41_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S41

Author(s):

Satoru Hirako ◽

Masafumi Shionyu

Keyword(s):

Annual Meeting ◽

Protein Structures ◽

Scoring Function ◽

Genome Biology ◽

Biophysical Society ◽

Domain Protein ◽

Domain Docking

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2SP5-04 Large-amplitude fluctuation and function of proteins studied by molecular simulations(2SP5 How are biological molecules fluctuating?,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s14_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S14

Author(s):

Shoji Takada

Keyword(s):

Annual Meeting ◽

Large Amplitude ◽

Molecular Simulations ◽

Amplitude Fluctuation ◽

Biological Molecules ◽

Biophysical Society ◽

And Function

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2SB1450 Molecular simulations of soft interaction between calcium pump and phospholamban(2SB Intrinsically Disordered Proteins:Structure,Property and Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s9_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S9

Author(s):

Yuji Sugita

Keyword(s):

Annual Meeting ◽

Molecular Simulations ◽

Calcium Pump ◽

Intrinsically Disordered ◽

Biophysical Society ◽

Soft Interaction ◽

And Function

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3SBA-03 Molecular simulations of proton pumps and biomolecular motors(Rise of molecular machines,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s137_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S137

Author(s):

Cui Qiang

Keyword(s):

Annual Meeting ◽

Molecular Simulations ◽

Molecular Machines ◽

Proton Pumps ◽

Biomolecular Motors ◽

Biophysical Society

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3P-182 Functionally rotating mechanism of a multidrug transporter studied by coarse-grained simulation(Biol & Artifi memb.:Dynamics,Oral Presentations,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s182_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S182

Author(s):

Xin-Qiu Yao ◽

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

Multidrug Transporter ◽

Biophysical Society ◽

Oral Presentations

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