3C0948 Dynamical motions of tRNA and ribosome complex during translation elongation studied by coarse-grained molecular simulations(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Naoto Hori; Shoji Takada

doi:10.2142/biophys.52.s60_4

3C0948 Dynamical motions of tRNA and ribosome complex during translation elongation studied by coarse-grained molecular simulations(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s60_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S60

Author(s):

Naoto Hori ◽

Shoji Takada

Keyword(s):

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Molecular Simulations ◽

Coarse Grained ◽

Translation Elongation ◽

Biophysical Society

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3C1110 The probability of double-strand breaks in genome-sized DNA decreases markedly as the DNA concentration increases(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s61_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S61

Author(s):

Shunsuke Shimobayashi ◽

Takafumi Iwaki ◽

Toshiaki Mori ◽

Kenichi Yoshikawa

Keyword(s):

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Double Strand Breaks ◽

Strand Breaks ◽

Dna Concentration ◽

Biophysical Society

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3C1022 Non-canonical functions of translational factors as RNA replication cofactors(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s61_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S61

Author(s):

Daijiro Takeshita ◽

Kozo Tomita

Keyword(s):

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Rna Replication ◽

Biophysical Society

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3P028 Interactions of MEK1 with ERK2 in mammalian MAPK pathway studied by coarse-grained molecular simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Ryo Kanada ◽

Shoji Takada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Mapk Pathway ◽

Molecular Simulations ◽

Coarse Grained ◽

Biophysical Society

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3C0900 Tandem-like fusion of two heterologous RNA-recognition motifs in TDP-43 enhances the specificity to its target nucleotide sequence(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s59_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S59-S60

Author(s):

Yo Suzuki ◽

Yoshiaki Furukawa

Keyword(s):

Nucleotide Sequence ◽

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Rna Recognition ◽

Rna Recognition Motifs ◽

Biophysical Society ◽

Recognition Motifs

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1PT171 Co-translation folding of a three-domain protein surf1 studied by coarse-grained molecular simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s98_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S98

Author(s):

Tomohiro Tanaka ◽

Naoto Hori ◽

Syoji Takada

Keyword(s):

Annual Meeting ◽

Molecular Simulations ◽

Coarse Grained ◽

Biophysical Society ◽

Domain Protein

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3C1058 Single-molecule force measurement for the interaction between ribosome and SecM arrest sequence(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s61_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S61

Author(s):

Zhuohao Yang ◽

Ryo Iizuka ◽

Takashi Funatsu

Keyword(s):

Nucleic Acids ◽

Annual Meeting ◽

Single Molecule ◽

Oral Presentation ◽

Force Measurement ◽

Biophysical Society

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3C0936 Development of intelligent ribozyme whose activity switches on in response to K^+ via quadruplex formation(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s60_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S60

Author(s):

Yudai Yamaoki ◽

Tsukasa Mashima ◽

Yu Sakurai ◽

Yukari Hara ◽

Takashi Nagata ◽

...

Keyword(s):

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Biophysical Society ◽

Quadruplex Formation

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3PT007 Movement of T4 sliding clamp on DNA studied by coarse-grained molecular simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s156_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S156

Author(s):

Itaru Narihara ◽

Tsuyoshi Terakawa ◽

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Annual Meeting ◽

Molecular Simulations ◽

Coarse Grained ◽

Sliding Clamp ◽

Biophysical Society

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3C1034 Elucidation of the location-dependent deamination reaction mechanism of an anti-HIV factor, APOBEC3G(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s61_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S61

Author(s):

Ayako Furukawa ◽

Kenji Sugase ◽

Ryo Morishita ◽

Taashi Nagata ◽

Akifumi Takaori ◽

...

Keyword(s):

Reaction Mechanism ◽

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Biophysical Society ◽

Deamination Reaction ◽

Anti Hiv

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3C1010 A structural basis for the antibiotic resistance conferred by an A1408G mutation in 16S rRNA(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s60_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S60

Author(s):

Jiro Kondo

Keyword(s):

Antibiotic Resistance ◽

16S Rrna ◽

Nucleic Acids ◽

Annual Meeting ◽

Oral Presentation ◽

Structural Basis ◽

Biophysical Society

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