3B0900 The cytosolic C-terminal four-helix bundle regulates the gating of prokaryotic sodium channel(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Katsumasa Irie; Takushi Shimomura; Yoshinori Fujiyoshi

doi:10.2142/biophys.52.s57_4

3B0900 The cytosolic C-terminal four-helix bundle regulates the gating of prokaryotic sodium channel(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s57_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S57

Author(s):

Katsumasa Irie ◽

Takushi Shimomura ◽

Yoshinori Fujiyoshi

Keyword(s):

Circadian Rhythm ◽

Sodium Channel ◽

Annual Meeting ◽

Oral Presentation ◽

Helix Bundle ◽

Biophysical Society ◽

Four Helix Bundle

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3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water

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3B0912 X-ray structural analysis of HypE and HypF, maturation factors for [NiFe]-hydrogenases(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s57_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S57-S58

Author(s):

Yasuhito Shomura ◽

Yoshiki Higuchi

Keyword(s):

Circadian Rhythm ◽

Structural Analysis ◽

Annual Meeting ◽

Oral Presentation ◽

X Ray ◽

Biophysical Society

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3B1058 Autodephosphorylation of cyanobacterial circadian clock protein KaiC occurs via formation of ATP as an intermediate(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s59_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S59

Author(s):

Taeko Ohkawa-Nishiwaki ◽

Takao Kondo

Keyword(s):

Circadian Rhythm ◽

Circadian Clock ◽

Annual Meeting ◽

Oral Presentation ◽

Biophysical Society ◽

Clock Protein

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1P-219 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(Photobiology:Vision & Photoreception, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s96_7 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S96

Author(s):

Koro Nishikata ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Electron Paramagnetic Resonance ◽

Annual Meeting ◽

Dynamical Analysis ◽

Paramagnetic Resonance ◽

Helix Bundle ◽

Biophysical Society ◽

Four Helix Bundle ◽

Electron Paramagnetic ◽

Bundle Structure

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3B0924 Dynamic structural and antigen binding analyses of antibody single-chain Fvs(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Yusuke Tanaka ◽

Hiroshi Sekiguchi ◽

Yuji C. Sasaki ◽

Takachika Azuma ◽

Masayuki Oda

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Antigen Binding ◽

Single Chain ◽

Biophysical Society

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1TP2-02 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s32_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S32-S33

Author(s):

Koro Nishikata ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Electron Paramagnetic Resonance ◽

Annual Meeting ◽

Dynamical Analysis ◽

Paramagnetic Resonance ◽

Helix Bundle ◽

Biophysical Society ◽

Four Helix Bundle ◽

Electron Paramagnetic ◽

Bundle Structure

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3B0936 Mechanical control of light-induced protein conformational change of photoactive yellow protein(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Yasushi Imamoto ◽

Take Matsuyama ◽

Yoshinori Shichida

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Conformational Change ◽

Oral Presentation ◽

Photoactive Yellow Protein ◽

Mechanical Control ◽

Protein Conformational Change ◽

Biophysical Society

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3B1022 A computational Investigation into the MHC-I Recognition Mechanism of MIR2 from Kaposi's Sarcoma-Associated Herpesvirus(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58-S59

Author(s):

Pai-Chi Li ◽

Naoyuki Miyashita ◽

Satoshi Ishido ◽

Yuji Sugita

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Kaposi's Sarcoma ◽

Kaposi’S Sarcoma ◽

Computational Investigation ◽

Recognition Mechanism ◽

Mhc I ◽

Biophysical Society ◽

Kaposi’S Sarcoma Associated Herpesvirus

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1PT135 Simulation study for designing protein-protein interaction interfaces based on a four-helix bundle protein(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s91_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S91

Author(s):

Masaki Fukuda ◽

Yu Komatsu ◽

Ryota Morikawa ◽

Takeshi Miyakawa ◽

Masako Takasu ◽

...

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Simulation Study ◽

Helix Bundle ◽

Protein Protein Interaction ◽

Biophysical Society ◽

Four Helix Bundle ◽

Bundle Protein

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3B1110 Intramolecular feedback regulation of cyanobacterial KaiC ATPase(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s59_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S59

Author(s):

Atsushi Mukaiyama ◽

Yasuhiro Onoue ◽

Masato Osako ◽

Takao Kondo ◽

Shuji Akiyama

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Feedback Regulation ◽

Biophysical Society

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