1PT135 Simulation study for designing protein-protein interaction interfaces based on a four-helix bundle protein(The 50th Annual Meeting of the Biophysical Society of Japan)

Masaki Fukuda; Yu Komatsu; Ryota Morikawa; Takeshi Miyakawa; Masako Takasu; Satoshi Akanuma; Akihiko Yanagishi

doi:10.2142/biophys.52.s91_5

1PT135 Simulation study for designing protein-protein interaction interfaces based on a four-helix bundle protein(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s91_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S91

Author(s):

Masaki Fukuda ◽

Yu Komatsu ◽

Ryota Morikawa ◽

Takeshi Miyakawa ◽

Masako Takasu ◽

...

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Simulation Study ◽

Helix Bundle ◽

Protein Protein Interaction ◽

Biophysical Society ◽

Four Helix Bundle ◽

Bundle Protein

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2P-243 The prediction of protein-protein interaction sites in sequences using a naive bayes classifier with a kernel density estimation(Bioinformatics:Functional genomics,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s145_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S145

Author(s):

Yoichi Murakami ◽

Kenji Mizuguchi

Keyword(s):

Annual Meeting ◽

Density Estimation ◽

Protein Interaction ◽

Kernel Density Estimation ◽

Kernel Density ◽

Bayes Classifier ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Biophysical Society ◽

Protein Interaction Sites

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3P094 Theoretical evaluation of applicability of micro-scale frontal gel chromatography to measuring protein-protein interaction(Protein: Measurement & Analysis,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s161_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S161

Author(s):

Tetsuo Ishida ◽

Hiroyuki Tanaka ◽

Atsushi Yamamoto ◽

Kihachiro Horiike

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Gel Chromatography ◽

Theoretical Evaluation ◽

Micro Scale ◽

Protein Protein Interaction ◽

Measurement Analysis ◽

Biophysical Society ◽

Protein Measurement

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3P059 Protein-protein interaction revealed by the rotational and translational motion(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s258_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S258

Author(s):

Akane Kato ◽

Etsuko Nishimoto

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Translational Motion ◽

Protein Protein Interaction ◽

Protein Property ◽

Biophysical Society

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1P-219 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(Photobiology:Vision & Photoreception, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s96_7 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S96

Author(s):

Koro Nishikata ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Electron Paramagnetic Resonance ◽

Annual Meeting ◽

Dynamical Analysis ◽

Paramagnetic Resonance ◽

Helix Bundle ◽

Biophysical Society ◽

Four Helix Bundle ◽

Electron Paramagnetic ◽

Bundle Structure

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2P-288 Development of database for protein-protein interaction sites(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s119_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S119

Author(s):

Takashi Ishida ◽

Miho Higurashi ◽

Kengo Kinoshita

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Biophysical Society ◽

Protein Interaction Sites

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1P265 Development of a method for protein-protein interaction modeling using IntAct database(22A. Bioinformatics:Structural genomics,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s185_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S185

Author(s):

Toshiyuki Tsuji ◽

Takao Yoda ◽

Tsuyoshi Shirai

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Biophysical Society ◽

Interaction Modeling

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1TP2-02 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s32_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S32-S33

Author(s):

Koro Nishikata ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Electron Paramagnetic Resonance ◽

Annual Meeting ◽

Dynamical Analysis ◽

Paramagnetic Resonance ◽

Helix Bundle ◽

Biophysical Society ◽

Four Helix Bundle ◽

Electron Paramagnetic ◽

Bundle Structure

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2P014 MEGADOCK: a high-performance protein-protein interaction prediction tool on supercomputing environments(01A. Protein: Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s197_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S197

Author(s):

Masahito Ohue ◽

Yuri Matsuzaki ◽

Nobuyuki Uchikoga ◽

Takashi Ishida ◽

Yutaka Akiyama

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Protein Interaction ◽

High Performance ◽

Prediction Tool ◽

Interaction Prediction ◽

Protein Protein Interaction ◽

Biophysical Society ◽

Protein Interaction Prediction

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3P131 Difficulty in Observing of Solvent Effect on Protein-Protein Interaction : A Theoretical Study with a Simple Model(07. Water & Hydration & Electrolyte,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s270_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S270

Author(s):

Takumi Yamashita ◽

Shingo Fujihara ◽

Ryo Akiyama

Keyword(s):

Simple Model ◽

Solvent Effect ◽

Annual Meeting ◽

Protein Interaction ◽

Theoretical Study ◽

Protein Protein Interaction ◽

Biophysical Society

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3TA2-08 PELDOR analysis of the protein-protein interaction in the blue light sensor BLUF protein SyPixD(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s54_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S54

Author(s):

Toru Kondo ◽

Kazuhiko Tsutsui ◽

Shinji Masuda ◽

Hiroyuki Mino

Keyword(s):

Annual Meeting ◽

Blue Light ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Light Sensor ◽

Biophysical Society

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