2P-088 Role of indirect readout in protein-DNA recognition assessed by a Bayesian approach(Nucleic acid:Interaction & Complex formation,The 47th Annual Meeting of the Biophysical Society of Japan)

Satoshi Yamasaki; Kazuhiko Fukui; Hidetoshi Kono; Kentaro Shimizu; Akinori Sarai; Tohru Terada

doi:10.2142/biophys.49.s119_7

2P-088 Role of indirect readout in protein-DNA recognition assessed by a Bayesian approach(Nucleic acid:Interaction & Complex formation,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s119_7 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S119-S120

Author(s):

Satoshi Yamasaki ◽

Kazuhiko Fukui ◽

Hidetoshi Kono ◽

Kentaro Shimizu ◽

Akinori Sarai ◽

...

Keyword(s):

Complex Formation ◽

Annual Meeting ◽

Bayesian Approach ◽

Dna Recognition ◽

Biophysical Society ◽

Indirect Readout

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3P-097 Structure-based Analysis of Cooperativity in Protein-DNA Recognition(Nucleic acid:Interaction & Complex formation,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s167_4 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S167

Author(s):

Akihiro Tanaka ◽

Satoshi Fujii ◽

Hidetoshi Kono ◽

Akinori Sarai

Keyword(s):

Complex Formation ◽

Annual Meeting ◽

Dna Recognition ◽

Biophysical Society

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1P003 Preferential domain orientation of a full length HMGB2 protein and the role of the linker region(Protein:Structure,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s19_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S19

Author(s):

Jun-ichi' Uewaki ◽

Naoko Tate ◽

Shin-ichi Tate

Keyword(s):

Annual Meeting ◽

Full Length ◽

Linker Region ◽

Domain Orientation ◽

Biophysical Society

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1P029 The role of weak interaction in a blue copper protein, plastocyanin from Ulva pertusa(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s145_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S145

Author(s):

Ikeda Soichiro ◽

Takashina Akiko ◽

Yamaguchi Takahide ◽

Aoki Risa ◽

Unno Masaki ◽

...

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Weak Interaction ◽

Ulva Pertusa ◽

Blue Copper Protein ◽

Blue Copper ◽

Copper Protein ◽

Biophysical Society

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2SP6-05 The role of H-doping in the electronic structure, spin localization and electron transfer of iron-sulfur [2Fe-2S] proteins(2SP6 Towards Supercomputing for Electronic Structures of Biological Macromolecules,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s15_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S15

Author(s):

Wayne Kenneth Dawson ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Electron Transfer ◽

Electronic Structure ◽

Annual Meeting ◽

Electronic Structures ◽

Biological Macromolecules ◽

Iron Sulfur ◽

Biophysical Society

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3P278 Role of intronic delay in oscillatory gene expression(24. Mathematical biology,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s295_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S295

Author(s):

Bhaswati Bhattacharyya ◽

Ziya Kalay

Keyword(s):

Gene Expression ◽

Mathematical Biology ◽

Annual Meeting ◽

Biophysical Society ◽

Oscillatory Gene Expression

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3P-209 Role of Asp252 in chloride transport by pharaonis halorhodopsin(Photobiology:Vision & Photoreception,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s186_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S186

Author(s):

Takashi Kikukawa ◽

Seiji Miyauchi ◽

Hiroaki Ichio ◽

Taku Kitagawa ◽

Makoto Demura ◽

...

Keyword(s):

Annual Meeting ◽

Chloride Transport ◽

Biophysical Society

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2P-066 The complex formation of Rpp21 and Rpp29 plays an important role in catalytic activity of ribonuclease P.(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s85_3 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S85

Author(s):

Takashi Honda ◽

Yoshimitu Kakuta ◽

Makoto Kimura

Keyword(s):

Catalytic Activity ◽

Complex Formation ◽

Annual Meeting ◽

Ribonuclease P ◽

Biophysical Society

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3P141 Role of troponin in the contraction of striated muscle : The effect of partial exchange to cardiac troponin on SPOC in skeletal myofibrils(Muscle,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s169_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S169-S170

Author(s):

Shin Matsubara ◽

Shin'ichi Ishiwata

Keyword(s):

Annual Meeting ◽

Cardiac Troponin ◽

Striated Muscle ◽

Biophysical Society

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3P128 Metal Cations(2+) Cause the Folding Transition of DNA but Inhibit Spermidine(3+)-Induced Compaction(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s270_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S270

Author(s):

Chika Tongu ◽

Yuko Yoshikawa ◽

Anatoly A Zinchenko ◽

Chen Ning ◽

Takahiro Kenmotsu ◽

...

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Metal Cations ◽

Acid Interaction ◽

Biophysical Society

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2P136 The role of protein shape and RNA secondary structure in protein-RNA interaction(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s106_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S106

Author(s):

Junichi Iwakiri ◽

Hiroki Tateishi ◽

Naoya Kenmochi

Keyword(s):

Secondary Structure ◽

Annual Meeting ◽

Rna Secondary Structure ◽

Biophysical Society ◽

Rna Interaction ◽

Protein Shape

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