2P-114 Sequence-dependent DNA deformability and hydration studied by molecular dynamics simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Yoshiteru Yonetani; Satoshi Fujii; Akinori Sarai; Hidetoshi Kono; Nobuhiro Go

doi:10.2142/biophys.48.s92_7

2P-114 Sequence-dependent DNA deformability and hydration studied by molecular dynamics simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s92_7 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S92-S93

Author(s):

Yoshiteru Yonetani ◽

Satoshi Fujii ◽

Akinori Sarai ◽

Hidetoshi Kono ◽

Nobuhiro Go

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Sequence Dependent ◽

Biophysical Society ◽

Dynamics Simulations

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1P242 1I1435 Analysis of the effect of water molecules on lipid bilayer dynamics in aqueous salt solutions using molecular dynamics simulations(Biol & Artifi memb.:Dynamics,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s62_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S62

Author(s):

Rina Kagawa ◽

Yoshinori Hirano ◽

Kenji Yasuoka ◽

Masato Yasui

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Lipid Bilayer ◽

Water Molecules ◽

Salt Solutions ◽

Aqueous Salt Solutions ◽

Biophysical Society ◽

Dynamics Simulations ◽

Oral Presentations

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3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

Dynamics Simulations

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1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Mechanosensitive Channel ◽

E Coli ◽

Biophysical Society ◽

Dynamics Simulations

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3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water

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2P135 Analysis of translocation of tRNA molecules through ribosome using electron microscopy density map and molecular dynamics simulations(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s106_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S106

Author(s):

Hisashi Ishida

Keyword(s):

Electron Microscopy ◽

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Biophysical Society ◽

Density Map ◽

Dynamics Simulations

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2PT166 Theoretical analysis of fully-hydrated structures of human adult hemoglobin exploiting molecular dynamics simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s133_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S133

Author(s):

Tetsuhiko Itagaki ◽

Jiyoung Kang ◽

Masaru Tateno

Keyword(s):

Molecular Dynamics ◽

Theoretical Analysis ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Human Adult ◽

Biophysical Society ◽

Adult Hemoglobin ◽

Dynamics Simulations

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3TA1-05 Investigation of Protein Domain Motions by Molecular Dynamics Simulations(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s52_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S52

Author(s):

Hiroko Kondo ◽

Noriaki Okimoto ◽

Gentaro Morimoto ◽

Makoto Taiji

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Protein Domain ◽

Biophysical Society ◽

Dynamics Simulations ◽

Domain Motions

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3TA5-02 Conformational changes of a peptide induced by temperature and pressure : multibaric-multithermal molecular dynamics simulations(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s58_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S58

Author(s):

Hisashi Okumura

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Conformational Changes ◽

Biophysical Society ◽

Temperature And Pressure ◽

Dynamics Simulations

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2P-010 Solution structure of Schizosaccharomyces pombe Swi5 studied by small-angle X-ray scattering and molecular dynamics simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s76_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S76

Author(s):

Yuichi Kokabu ◽

Tomotaka Oroguchi ◽

Tsutomu Yamane ◽

Hiroshi Hashimoto ◽

Toshiyuki Shimizu ◽

...

Keyword(s):

Molecular Dynamics ◽

Schizosaccharomyces Pombe ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Small Angle ◽

Solution Structure ◽

X Ray ◽

X Ray Scattering ◽

Biophysical Society ◽

Dynamics Simulations

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1P129 Sequence and environmental effects on the B-A transition of DNA studied by molecular dynamics simulations(Nucleic acid:Structure & Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s42_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S42

Author(s):

Satoshi Fujii ◽

Hidetoshi Kono ◽

Nobuhiro Go ◽

Akinori Sarai

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Environmental Effects ◽

Biophysical Society ◽

Dynamics Simulations

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