scholarly journals 2P-010 Solution structure of Schizosaccharomyces pombe Swi5 studied by small-angle X-ray scattering and molecular dynamics simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

2008 ◽  
Vol 48 (supplement) ◽  
pp. S76
Author(s):  
Yuichi Kokabu ◽  
Tomotaka Oroguchi ◽  
Tsutomu Yamane ◽  
Hiroshi Hashimoto ◽  
Toshiyuki Shimizu ◽  
...  
1993 ◽  
Vol 297 ◽  
Author(s):  
R. Biswas ◽  
I. Kwon

Microvoids have been observed in a-Si:H as demonstrated by small angle X-ray scattering. We have studied the structural properties of these microvoids with molecular dynamics simulations. Using molecular dynamics simulations with classical potentials, we have created microvoids by removing Si and H atoms from a computer generated a-Si:H network. The internal surfaces of the microvoids were passivated with additional H atoms and the microvoids were fully relaxed. Microvoids over a limited range of sizes (5-90 missing atoms) were examined. We obtained a relaxed microvoid structure with no dangling bonds for a microvoid with 17 missing atoms, whereas other sizes examined produced less relaxed models with short H-H distances at the microvoid surface. The strains near the microvoid surface are described. The microvoid model was stable to local excitations on weak bonds in the vicinity of the microvoid.


Soft Matter ◽  
2014 ◽  
Vol 10 (46) ◽  
pp. 9260-9269 ◽  
Author(s):  
Héctor Santana ◽  
Cesar L. Avila ◽  
Ingrid Cabrera ◽  
Rolando Páez ◽  
Viviana Falcón ◽  
...  

Growth hormone releasing peptide-6 self-assembles into long hollow-cylinders, as evidenced by electron microscopy, small-angle X-ray scattering and molecular dynamics simulations.


2009 ◽  
Vol 96 (3) ◽  
pp. 299a
Author(s):  
Tomotaka Oroguchi ◽  
Yasuyuki Kato-Yamada ◽  
Hiroshi Hashimoto ◽  
Satoru Unzai ◽  
Mamoru Sato ◽  
...  

2017 ◽  
Vol 19 (19) ◽  
pp. 4680-4689 ◽  
Author(s):  
Donatien Gomes Rodrigues ◽  
Ophélie Fadel ◽  
Pierre Bauduin ◽  
Luc Girard ◽  
Philippe Guilbaud ◽  
...  

The structure of a bio-based extractant in oils was accessed by combining experiments and molecular dynamics simulations.


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