3P-302 Modularity as an evolutionary constraint on the yeast protein interaction networks(The 46th Annual Meeting of the Biophysical Society of Japan)

Masataka Kikuchi; Soichi Ogishima; Hiroshi Tanaka

doi:10.2142/biophys.48.s174_2

3P-302 Modularity as an evolutionary constraint on the yeast protein interaction networks(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s174_2 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S174

Author(s):

Masataka Kikuchi ◽

Soichi Ogishima ◽

Hiroshi Tanaka

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Evolutionary Constraint ◽

Yeast Protein ◽

Biophysical Society ◽

Yeast Protein Interaction

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Network topological reordering revealing systemic patterns in yeast protein interaction networks

10.1109/iembs.2009.5333885 ◽

2009 ◽

Author(s):

Xiaogang Wu ◽

R. Pandey ◽

J.Y. Chen

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Yeast Protein Interaction

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Predicting the Binding Patterns of Hub Proteins: A Study Using Yeast Protein Interaction Networks

PLoS ONE ◽

10.1371/journal.pone.0056833 ◽

2013 ◽

Vol 8 (2) ◽

pp. e56833 ◽

Cited By ~ 8

Author(s):

Carson M. Andorf ◽

Vasant Honavar ◽

Taner Z. Sen

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Yeast Protein Interaction ◽

Hub Proteins

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1P-289 The emergence of a disassortative structure in the evolution of protein-protein interaction networks(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s67_2 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S67

Author(s):

Takeshi Hase ◽

Yoshihito Niimura ◽

Tuguchika Kaminuma ◽

Hiroshi Tanaka

Keyword(s):

Annual Meeting ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Biophysical Society ◽

Protein Protein Interaction Networks

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Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks

Journal of Intelligent & Fuzzy Systems ◽

10.3233/jifs-17026 ◽

2018 ◽

Vol 34 (1) ◽

pp. 93-103 ◽

Cited By ~ 2

Author(s):

Buwen Cao ◽

Shuguang Deng ◽

Jiawei Luo ◽

Pingjian Ding ◽

Shulin Wang

Keyword(s):

Protein Interaction ◽

Clustering Algorithm ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Understanding centrality-lethality rule from the distinction of essential party/date hub proteins in yeast protein-protein interaction networks

2012 IEEE Symposium on Robotics and Applications (ISRA) ◽

10.1109/isra.2012.6219227 ◽

2012 ◽

Author(s):

Dong Yun-Yuan ◽

Yang Jun ◽

Liu Qi-Jun ◽

Wang Yong-Xian ◽

Wang Zheng-Hua

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

Hub Proteins

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Functional characterization of hub proteins in weighted yeast protein-protein interaction networks

2011 4th International Conference on Biomedical Engineering and Informatics (BMEI) ◽

10.1109/bmei.2011.6098526 ◽

2011 ◽

Cited By ~ 1

Author(s):

Dong Yun-yuan ◽

Liu Qi-jun ◽

Yang Jun ◽

Wang Yong-xian ◽

Wang Zheng-hua

Keyword(s):

Protein Interaction ◽

Functional Characterization ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

Hub Proteins

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Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks

BMC Systems Biology ◽

10.1186/1752-0509-4-155 ◽

2010 ◽

Vol 4 (1) ◽

pp. 155 ◽

Cited By ~ 9

Author(s):

Sandip Chakraborty ◽

Bratati Kahali ◽

Tapash C Ghosh

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Evolutionary Rates ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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MOEPGA: A novel method to detect protein complexes in yeast protein–protein interaction networks based on MultiObjective Evolutionary Programming Genetic Algorithm

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2015.06.006 ◽

2015 ◽

Vol 58 ◽

pp. 173-181 ◽

Cited By ~ 16

Author(s):

Buwen Cao ◽

Jiawei Luo ◽

Cheng Liang ◽

Shulin Wang ◽

Dan Song

Keyword(s):

Genetic Algorithm ◽

Protein Interaction ◽

Protein Complexes ◽

Evolutionary Programming ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Novel Method ◽

Protein Protein Interaction Networks

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Network simulation reveals significant contribution of network motifs to the age-dependency of yeast protein–protein interaction networks

Molecular BioSystems ◽

10.1039/c4mb00230j ◽

2014 ◽

Vol 10 (9) ◽

pp. 2277 ◽

Cited By ~ 6

Author(s):

Cheng Liang ◽

Jiawei Luo ◽

Dan Song

Keyword(s):

Protein Interaction ◽

Significant Contribution ◽

Network Simulation ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Network Motifs ◽

Age Dependency ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Protein Interaction Networks: When the Sum Is Greater than the Parts

PSI Structural Genomics Knowledgebase ◽

10.1038/sbkb.2012.133 ◽

2013 ◽

Author(s):

Angela K. Eggleston

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks

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