Network simulation reveals significant contribution of network motifs to the age-dependency of yeast protein–protein interaction networks

Cheng Liang; Jiawei Luo; Dan Song

doi:10.1039/c4mb00230j

Network simulation reveals significant contribution of network motifs to the age-dependency of yeast protein–protein interaction networks

Molecular BioSystems ◽

10.1039/c4mb00230j ◽

2014 ◽

Vol 10 (9) ◽

pp. 2277 ◽

Cited By ~ 6

Author(s):

Cheng Liang ◽

Jiawei Luo ◽

Dan Song

Keyword(s):

Protein Interaction ◽

Significant Contribution ◽

Network Simulation ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Network Motifs ◽

Age Dependency ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks

Journal of Intelligent & Fuzzy Systems ◽

10.3233/jifs-17026 ◽

2018 ◽

Vol 34 (1) ◽

pp. 93-103 ◽

Cited By ~ 2

Author(s):

Buwen Cao ◽

Shuguang Deng ◽

Jiawei Luo ◽

Pingjian Ding ◽

Shulin Wang

Keyword(s):

Protein Interaction ◽

Clustering Algorithm ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Understanding centrality-lethality rule from the distinction of essential party/date hub proteins in yeast protein-protein interaction networks

2012 IEEE Symposium on Robotics and Applications (ISRA) ◽

10.1109/isra.2012.6219227 ◽

2012 ◽

Author(s):

Dong Yun-Yuan ◽

Yang Jun ◽

Liu Qi-Jun ◽

Wang Yong-Xian ◽

Wang Zheng-Hua

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

Hub Proteins

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Network motifs that recur across species, including gene regulatory and protein–protein interaction networks

Archives of Toxicology ◽

10.1007/s00204-014-1274-y ◽

2014 ◽

Vol 89 (4) ◽

pp. 489-499 ◽

Cited By ~ 4

Author(s):

Robert Borotkanics ◽

Harold Lehmann

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Network Motifs ◽

Protein Protein Interaction ◽

Gene Regulatory ◽

Protein Protein Interaction Networks

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CombiMotif: A new algorithm for network motifs discovery in protein–protein interaction networks

Physica A Statistical Mechanics and its Applications ◽

10.1016/j.physa.2014.08.062 ◽

2014 ◽

Vol 416 ◽

pp. 309-320

Author(s):

Jiawei Luo ◽

Guanghui Li ◽

Dan Song ◽

Cheng Liang

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Network Motifs ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Functional characterization of hub proteins in weighted yeast protein-protein interaction networks

2011 4th International Conference on Biomedical Engineering and Informatics (BMEI) ◽

10.1109/bmei.2011.6098526 ◽

2011 ◽

Cited By ~ 1

Author(s):

Dong Yun-yuan ◽

Liu Qi-jun ◽

Yang Jun ◽

Wang Yong-xian ◽

Wang Zheng-hua

Keyword(s):

Protein Interaction ◽

Functional Characterization ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

Hub Proteins

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Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks

BMC Systems Biology ◽

10.1186/1752-0509-4-155 ◽

2010 ◽

Vol 4 (1) ◽

pp. 155 ◽

Cited By ~ 9

Author(s):

Sandip Chakraborty ◽

Bratati Kahali ◽

Tapash C Ghosh

Keyword(s):

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Evolutionary Rates ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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MOEPGA: A novel method to detect protein complexes in yeast protein–protein interaction networks based on MultiObjective Evolutionary Programming Genetic Algorithm

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2015.06.006 ◽

2015 ◽

Vol 58 ◽

pp. 173-181 ◽

Cited By ~ 16

Author(s):

Buwen Cao ◽

Jiawei Luo ◽

Cheng Liang ◽

Shulin Wang ◽

Dan Song

Keyword(s):

Genetic Algorithm ◽

Protein Interaction ◽

Protein Complexes ◽

Evolutionary Programming ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Novel Method ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Modular decomposition of protein-protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020428.232579 ◽

2004 ◽

Author(s):

Ruedi Aebersold

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Modular Decomposition ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718178553.793487291 ◽

2013 ◽

Author(s):

Marc Therrien ◽

Dariel Ashton-Beaucage

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2019.05.007 ◽

2019 ◽

Vol 17 ◽

pp. 805-811 ◽

Cited By ~ 7

Author(s):

Kumar Yugandhar ◽

Shagun Gupta ◽

Haiyuan Yu

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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