Phylogenetic Relationships among Dabbling Duck Species in Korea using COI Gene Variations in mtDNA

2012 ◽  
Vol 49 (3) ◽  
pp. 163-170 ◽  
Author(s):  
Seon-Deok Jin ◽  
Md. Rashedul Hoque ◽  
Dong-Won Seo ◽  
In-Kyu Kim ◽  
Cheorun Jo ◽  
...  
Keyword(s):  
Phylogenetic Relationships ◽  
Coi Gene ◽  
Duck Species ◽  
Dabbling Duck

scholarly journals DNA BARCODING USING COI GENE SEQUENCES OF WILD BETTA FIGHTING FISH FROM INDONESIA: PHYLOGENY, STATUS AND DIVERSITY

2020 ◽  
Vol 26 (2) ◽  
pp. 97
Author(s):  
Melta R. Fahmi ◽  
Eni Kusrini ◽  
Erma P. Hayuningtiyas ◽  
Shofihar Sinansari ◽  
Rudhy Gustiano
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Gene Sequence ◽  
Ornamental Fish ◽  
Coi Gene ◽  
Tree Construction ◽  
In The Wild ◽  
Blast Program

The wild betta fish is a potential ornamental fish export commodity normally caught by traders or hobbyists in the wild. However, the population of wild betta in nature has declined and become a threat for their sustainability. This research was conducted to analyze the genetic diversity, phylogenetic relationships, and molecular identification through DNA COI gene sequence of Indonesian wild betta fish. A total of 92 wild betta fish specimens were collected in this study. Amplification of COI genes was carried out using Fish F1, Fish R1, Fish F2, and Fish R2 primers. The genetic diversity and phylogenetic relationships were analyzed using MEGA version 5 software program. Species identification of the specimen was conducted using BLAST program with 98-100% similarity value of the DNA sequences to indicate the same species. Phylogenetic tree construction showed seven monophyletic clades and showed that Betta smaragdina was the ancestral species of genus Betta in Indonesian waters. Genetic distance among species ranged from 0.02 to 0.30, whereas intra-species genetic distance ranged from 0 to 6.54.

A PCR primer set for determination of phylogenetic relationships of Bursaphelenchus species within the xylophilus group

Nematology ◽  
2002 ◽  
Vol 4 (1) ◽  
pp. 35-41 ◽  
Author(s):  
Natsumi Kanzaki ◽  
Kazuyoshi Futai
Keyword(s):  
North America ◽  
Phylogenetic Relationships ◽  
Coniferous Forest ◽  
The Other ◽  
Coi Gene ◽  
Eurasian Continent ◽  
Dna Base ◽  
Base Sequences ◽  
Free Living Nematode

AbstractThe phylogenetic relationships of Bursaphelenchus conicaudatus with B. abruptus, B. fraudulentus, B. mucronatus and B. xylophilus species were analysed based on the DNA base sequences of 18S, 5.8S, ITS1 and ITS2 of rDNA and the partial code of mitochondrial cytochrome oxidase subunit I (COI) gene. The monophyly of B. abruptus and the other species in the xylophilus group was not supported, and B. abruptus could be excluded from the xylophilus group. The other species, i.e ., B. conicaudatus, B. fraudulentus, B. mucronatus and B. xylophilus were assumed to be monophyletic. The ancestor of these four species is assumed to have originated in the eastern part of the Eurasian continent as a free-living nematode inhabiting broad-leaved trees. First, B. conicaudatus branched from the ancestor in eastern Asia. Then B. fraudulentus and B. mucronatus separated from the ancestor. B. mucronatus changed its host from broad-leaved trees to conifers and spread throughout the coniferous forest over the Eurasian continent and North America. B. xylophilus might originate from a population of B. mucronatus remaining in North America after B. mucronatus had diversified.

Effectiveness of Spinning-Wing Decoys Varies Among Dabbling Duck Species and Locations

2006 ◽  
Vol 70 (3) ◽  
pp. 799-804 ◽  
Author(s):  
JOSHUA T. ACKERMAN ◽  
JOHN M. EADIE ◽  
MICHAEL L. SZYMANSKI ◽  
JASON H. CASWELL ◽  
MARK P. VRTISKA ◽  
...  
Keyword(s):  
Duck Species ◽  
Dabbling Duck

Hybridization between the Mallard and native dabbling ducks: causes, consequences and management.

2014 ◽  
Vol 20 (1) ◽  
pp. 41 ◽  
Author(s):  
P-J Guay ◽  
A Taysom ◽  
R Robinson ◽  
J P Tracey
Keyword(s):  
Introduced Species ◽  
Anas Platyrhynchos ◽  
Management Strategies ◽  
Dabbling Ducks ◽  
Monitoring Techniques ◽  
Duck Species ◽  
Black Duck ◽  
Dabbling Duck ◽  
The Pacific ◽  
The World

Waterbirds are currently facing various threats throughout the world. One threat that is often overlooked is hybridization with introduced species. This threatening process is especially significant for dabbling ducks (Genus Anas). The Mallard (Anas platyrhynchos) has been introduced to various parts of the world and now hybridizes and threatens numerous Anas species. In this paper, we review hybridization between Mallards and dabbling ducks with a specific emphasis on threats to the Pacific Black Duck (A. superciliosa). We then present an overview of the potential mechanisms of hybridization and discuss monitoring techniques. We conclude by proposing management strategies and speculating on the future of native dabbling duck species.

scholarly journals The dna barcoding data and genetic distance of leaf beetles (Coleoptera, Chrysomelidae) in Vietnam

2020 ◽  
Vol 42 (4) ◽  
Author(s):  
Nguyen Thi Dinh
Keyword(s):  
Genetic Distance ◽  
Dna Barcoding ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Dna Barcode ◽  
Coi Gene ◽  
Biodiversity Assessment ◽  
Leaf Beetles ◽  
The World ◽  
Living Organisms

DNA barcoding is a useful tool in identifying species, biodiversity assessment, and revealing phylogenetic relationships of living organisms in the world. However, the DNA barcode data for leaf beetles in Vietnam is lacking. In this study, sixteen DNA sequences of 658 bp of COI gene from nine species (five genera; three subfamilies) of Chrysomelidae in Vietnam were (obtained). Intra- and inter-specific diversities, and phylogenetic relationships of these species were analyzed. 

scholarly journals Phylogenetic Relationships among Populations of the Vineyard Snail Cernuella virgata (Da Costa, 1778)

ISRN Zoology ◽  
2013 ◽  
Vol 2013 ◽  
pp. 1-9 ◽  
Author(s):  
Jasna Puizina ◽  
Sanja Puljas ◽  
Željana Fredotović ◽  
Ivica Šamanić ◽  
Grgur Pleslić
Keyword(s):  
Genetic Variability ◽  
16S Rdna ◽  
Phylogenetic Relationships ◽  
Western Europe ◽  
Population Analysis ◽  
Shell Growth ◽  
Shell Height ◽  
Haplotype Network ◽  
Coi Gene ◽  
Island Population

Cernuella virgata (Da Costa, 1778) (Mollusca: Hygromiidae), commonly known as the “vineyard snail,” is endemic species in Mediterranean and Western Europe including the British Isles, but in the Eastern USA and Australia it represents an introduced invasive species. The present work examines the genetic variability and phylogenetic relationships among the four populations of this land snail sampled along the east Adriatic region of Croatia using mitochondrial markers (partial 16S rDNA and COI gene) in addition to traditional methods of shell’s shape analysis. All the three molecular-phylogenetic approaches (median joining haplotype network analysis and Bayesian analysis, as well as maximum likelihood analysis) revealed two-three major subnetworks for both 16S rDNA and COI, with a clear distinction between south Adriatic haplotypes (Pisak) and north Adriatic haplotypes (Krk and Cres). The population from Karlobag was comprised of both north and south haplotypes, thus representing a putative contact zone between these two groups. The morphometric analysis showed that individuals from Cres island population were statistically significantly wider and higher than individuals from Pisak population. Analysis of the SW/SH ratio and the relationship between shell width and shell height showed no differences in shell growth between the two examined populations, indicating equal shell growth and shape, which gives the possibility that differences in size of individuals between those two populations could be influenced by biotic (physiological) or abiotic (environmental) factors. This study represents the first analysis of genetic variability and relatedness among native populations of C. virgata.

Temperature does not dictate the wintering distributions of European dabbling duck species

Ibis ◽  
2012 ◽  
Vol 155 (1) ◽  
pp. 80-88 ◽  
Author(s):  
Lars Dalby ◽  
Anthony D. Fox ◽  
Ib K. Petersen ◽  
Simon Delany ◽  
Jens-Christian Svenning
Keyword(s):  
Duck Species ◽  
Dabbling Duck
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