scholarly journals Phenotypic and genotypic characterization of Candida species isolated from candideamia in Iran

2018 ◽  
Vol 4 (2) ◽  
Author(s):  
Seyedeh Zahra Sadrossadati ◽  
Mohammad Ghahri ◽  
Abbas Ali Imani Fooladi ◽  
Shirin Sayyahfar ◽  
Sedigheh Beyraghi ◽  
...  
Keyword(s):  
Species Identification ◽  
Candida Species ◽  
Tween 80 ◽  
Common Species ◽  
Antifungal Drugs ◽  
Molecular Methods ◽  
Pcr Rflp ◽  
Appropriate Therapy ◽  
One Year ◽  
Phenotypic Methods

Background and Purpose: Candidemia is one of the most important fungal infections caused by Candida species. Infections and mortality caused by Candida species have been on a growing trend during the past two decades. The resistance of yeasts to antifungal drugs and their epidemiological issues have highlighted the importance of accurately distinguishing the yeasts at the species level. The technique applied for yeast identification should be fast enough to facilitate the imminent initiation of the appropriate therapy. Candidemia has not been studied comprehensively in Iran yet. Regarding this, the current study aimed to assess the epidemiology of candidemia at Tehran hospitals and compare the results with the previous findings. Materials and Methods: This study was conducted on 204 positive blood cultures obtained from 125 patients hospitalized in several hospitals located in Tehran, Iran, within a period of 13 months. The yeast isolation and species identification were accomplished using several phenotypic methods (i.e., production of germ tube in human serum, culture on CHROMagar Candida, and Corn meal agar containing Tween 80) and molecular methods, such as polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). In addition, unknown cases were subjected to PCR sequencing. These methods were then compared in terms of accuracy, sensitivity, and speed of identification. Results: According to the results, C. albicans (62.4%) was the most common isolate, followed by C. parapsilosis (n=36, 17.5%), C. glabrata (n=18, 8.8%), C. tropicalis (n=13, 6.3%), Trichosporon asahii (n=3, 1.5%), C. kefyr (n=2, 1.0%), C. lusitaniae (n=2, 1.0%), C. intermedia (n=1, 0.5%), C. guilliermondii (n=1, 0.5%), and C. krusei (n=1, 0.5%), respectively. Conclusion: As the findings indicated, the most common species causing candidemia were C. albicans, C. parapsilosis, and C. glabrata, respectively. Children less than one year old and people with cancer were at higher risk for candidemia, compared to other groups. Moreover, phenotypic and molecular methods resulted in the identification of 65.2% and 96.6% of the isolates, respectively. Consequently, PCR-RFLP could be concluded as a more favorable technique for species identification. Keywords: Candidemia, Blood culture, Epidemiology, PCR-RFLP

scholarly journals Candiduria: its characterization, antifungal susceptibility pattern and biofilm formation

2018 ◽  
Vol 6 (12) ◽  
pp. 4070
Author(s):  
Ved Prakash ◽  
Deepika Verma ◽  
Sumit Agarwal
Keyword(s):  
Candida Species ◽  
Antifungal Susceptibility ◽  
Common Species ◽  
Antifungal Drugs ◽  
Urine Samples ◽  
Diffusion Method ◽  
Disc Diffusion ◽  
Susceptibility Pattern ◽  
Disc Diffusion Method ◽  
Resistant Strains

Background: Candida are the fourth most common species causing urinary tract infections. The last two decades has shown rapid increase in Candida associated UTI along with change in its distribution. The indiscriminate use of antifungal drugs, especially azole group have contributed in emergence of resistant strains of Candida. Biofilm producing property of Candida also contributes to antifungal resistance. Aims and objectives was to detect the occurrence of Candida as causative agent of UTI and a potent bio film producer. The susceptibility of Candida to antifungal drugs and their correlation with the production of bio film and presence of Foleys catheter was also determined.Methods: A total of 4192 urine specimens were analysed. Candida species isolated from urine samples were characterized using CHROM agar, sugar assimilation tests and micro morphology on corn meal agar. The antifungal susceptibility testing was performed by modified disc diffusion method on MHA with two drugs; fluconazole 25µg, and voriconazole 1µg discs. The biofilm production capability was tested according to the protocol proposed by Branchini et al.Results: Out of 113 Candida species isolated, 16.8% were Candida albicans as compared to 83.2% non albicans, with Candida tropicalis as the most common species. Antimicrobial sensitivity by modified Kirby Bauer disc diffusion method showed 74.3 % of Candida isolates to be fluconazole sensitive while sensitivity to voriconazole was 100%. 60.2% of Candida were biofilm producers out of which 48.5 % were from urine samples of catheterized patients. Similarly, 26.4 % of fluconazole resistant strains were also biofilm producers.Conclusions: The increased incidence of Non albicans candiduria which are also biofilm producers and resistant to commonly used drug fluconazole is a matter of concern. Therefore, the species identification of Candida isolates along with their antifungal susceptibility pattern should be routinely performed to help the clinicians in better treating the patients with candiduria.

The wine microbial consortium: a real terroir characteristic

OENO One ◽  
2006 ◽  
Vol 40 (4) ◽  
pp. 209 ◽  
Author(s):  
Vincent Renouf ◽  
Cécile Miot-Sertier ◽  
Pierre Strehaiano ◽  
Aline Lonvaud-Funel
Keyword(s):  
Species Identification ◽  
Microbial Population ◽  
Microbial Consortium ◽  
Oenococcus Oeni ◽  
Molecular Tools ◽  
Brettanomyces Bruxellensis ◽  
Microbiological Methods ◽  
Pcr Rflp ◽  
Microbial Population Dynamics ◽  
One Year

<p style="text-align: justify;">Yeast, bacteria, species and strains play a key role in the winemaking process by producing metabolites, which determine wine sensorial qualities. Therefore microbial population enumeration, species identification and strain discrimination from berry surface at harvest to storage in bottle are fundamental. The microbial diversity and significance of its variation according to the estate localization have not really been thoroughly considered in literature. This is the focus of this work. That should be of great interest because the spontaneous microbial population dynamics associated with a wine producing estate provide information on what might be considered as the method to obtain specific terroir typed wine. The both use of conventional microbiological methods like microbial population enumeration on nutritive selective media and efficient molecular tools of species identification like PCR-RFLP for yeasts and PCR-DGGE for bacteria and strains discrimination have demonstrated significant microbial differences between different estates localized in the Bordeaux area. Theses results appeared very interesting since certain microbial species are clearly specific of certain estates, in particular the bacterium Pediococcus parvulus, and also some strains of Saccharomyces cerevisiae, of Oenococcus oeni and Brettanomyces bruxellensis. Within an estate this specificity persists from one year to another. These differences observed suggest that the indigenous winemaking processes can contribute to the specificity of the wines produced on the various estates.. That concludes to the hypothesis of a microbial part in wines speficities.</p>

scholarly journals COMPARISON OF DIFFERENT PHENOYPIC TESTS FOR IDENTIFICATION OF CANDIDA ISOLATED FROM ORAL CAVITY

2020 ◽  
Vol 8 (1) ◽  
pp. 32-39
Author(s):  
Amruta B. Hooli ◽  
Kishore G. Bhat ◽  
Preeti Ingalgi
Keyword(s):  
Species Identification ◽  
Germ Tube ◽  
Fungal Infections ◽  
Lipolytic Activity ◽  
Oral Candidiasis ◽  
Antifungal Drugs ◽  
Tube Test ◽  
Chlamydospore Formation ◽  
Phenotypic Methods ◽  
Phenotypic Tests

Background and Objectives: Oral candidiasis is one of the most common fungal infections affecting the oral mucosa. Candida genus is comprised of numerous species amongst which C.albicans is the commonest followed by C. dubliniensis. Interest has been increased towards identifying the non-albicans resistant to antifungal drugs. Various techniques are developed for species identification such as traditional, rapid, molecular and automated methods. These methods have their own advantages and limitations. Though the traditional methods are complex, time consuming, they are simple and economical as well. Hence this study was conducted to compare the different methods for presumptive species identification. Method: A total of 50 strains were isolated from patients suffering from oral candidiasis. Samples were collected from the affected area and transferred to sterile PBS. Each sample was subjected for germ tube test, lipolytic activity, chrome agar, check for chlamydsopore formation and carbohydrate assimilation test. Results: In the present study the phenotypic tests could provisionally identify the species. Out of 50 strains 27 isolates were identified by germ tube test, 36 strains produced lipase and positive for lipolytic activity. Chlamydospore formation provided a definitive identification of only 17 isolates. Only 7 isolates showed positive for carbohydrate assimilation tests. Conclusion: Our study clearly showed that the phenotypic methods are useful for only presumptive identification hence the molecular methods have to be performed for definitive identification.

The Chemistry of Drugs to Treat Candida albicans

2019 ◽  
Vol 19 (28) ◽  
pp. 2554-2566 ◽  
Author(s):  
Aurelio Ortiz ◽  
Estibaliz Sansinenea
Keyword(s):  
Candida Species ◽  
Antifungal Drugs ◽  
New Drugs ◽  
Drug Classes ◽  
Life Threatening ◽  
Antifungal Substances ◽  
High Level ◽  
Systemic Infections ◽  
New Compounds ◽  
Level Resistance

Background:: Candida species are in various parts of the human body as commensals. However, they can cause local mucosal infections and, sometimes, systemic infections in which Candida species can spread to all major organs and colonize them. Objective:: For the effective treatment of the mucosal infections and systemic life-threatening fungal diseases, a considerably large number of antifungal drugs have been developed and used for clinical purposes that comprise agents from four main drug classes: the polyenes, azoles, echinocandins, and antimetabolites. Method: : The synthesis of some of these drugs is available, allowing synthetic modification of the molecules to improve the biological activity against Candida species. The synthetic methodology for each compound is reviewed. Results: : The use of these compounds has caused a high-level resistance against these drugs, and therefore, new antifungal substances have been described in the last years. The organic synthesis of the known and new compounds is reported. Conclusion: : This article summarizes the chemistry of the existing agents, both the old drugs and new drugs, in the treatment of infections due to C. albicans, including the synthesis of the existing drugs.

Discrimination of clinically relevant Candida species by Fourier-transform infrared spectroscopy with attenuated total reflectance (FTIR-ATR)

RSC Advances ◽  
2016 ◽  
Vol 6 (94) ◽  
pp. 92065-92072 ◽  
Author(s):  
Sónia Silva ◽  
Flávia Tobaldini-Valerio ◽  
Sofia Costa-de-Oliveira ◽  
Mariana Henriques ◽  
Joana Azeredo ◽  
...  
Keyword(s):  
Fourier Transform ◽  
Infrared Spectroscopy ◽  
Fourier Transform Infrared Spectroscopy ◽  
Species Identification ◽  
Candida Species ◽  
Fourier Transform Infrared ◽  
Attenuated Total Reflectance ◽  
Total Reflectance ◽  
Reflectance Ftir

Accurate Candida species identification remains a challenge due to their phenotypic and genotypic similarity.

Molecular typing of Staphylococcus aureus based on PCR-RFLP of coa gene and RAPD analysis

2011 ◽  
Vol 14 (2) ◽  
pp. 285-286 ◽  
Author(s):  
J. Karakulska ◽  
A. Pobucewicz ◽  
P. Nawrotek ◽  
M. Muszyńska ◽  
A. Furowicz ◽  
...  
Keyword(s):  
Staphylococcus Aureus ◽  
Species Identification ◽  
Genetic Relationship ◽  
Molecular Typing ◽  
Rapd Analysis ◽  
Milk Samples ◽  
Rapd Pcr ◽  
Pcr Rflp ◽  
Mastitic Milk ◽  
Coa Gene

Molecular typing ofStaphylococcus aureusbased on PCR-RFLP ofcoagene and RAPD analysisThe aim of this study was molecular identification ofS. aureusstrains isolated from mastitic milk samples and establishing the genetic relationship between strains isolated from cows belonging to the same herd. In all 43 isolated strains thegapgene (930 bp) was amplified, which enabled their affiliation to theStaphylococcusgenus to be established. PCR-RFLP withAluI endonuclease of thegapgene as well asnuc(450 bp) andcoa(1130 bp) gene amplification allowed preciseS. aureusspecies identification. One hundred percent of the genetic relationship between strains was establishedviaRAPD-PCR and coa-typing.

Anti-Candida Activity of Pomegranate Peel Extract in Comparison with Curcumin Extract and their Synergism with Fluconazole and Nystatin

2021 ◽  
Vol 30 (2) ◽  
pp. 81-87
Author(s):  
Sara Y. Maxwell ◽  
Sally Elnawasany ◽  
Azza M. Hassan ◽  
Marwa M. E. Abd-Elmonsef
Keyword(s):  
Candida Species ◽  
Synergistic Effects ◽  
Systemic Disease ◽  
Antifungal Drugs ◽  
Diffusion Method ◽  
Oropharyngeal Candidiasis ◽  
Pomegranate Peel ◽  
Methanolic Extracts ◽  
Pomegranate Peel Extract

Background: Oropharyngeal candidiasis is an important sign that may reflect a serious systemic disease, especially in immunocompromised patients who face the intolerable side effects of the available antifungal drugs. This necessitates the development of safe and effective natural components. Objectives: to evaluate the in vitro activities of both pomegranate peel and curcumin extracts and to compare them with nystatin and fluconazole drugs against Candida species. As far as we know, this is the first study comparing between the antifungal potency of both extracts. Methodology: Different Candida species were isolated from patients with oropharyngeal candidiasis. The antifungal activities of methanolic extracts of pomegranate peel and curcumin were tested by disc diffusion method. Both extracts were added to each of nystatin and fluconazole discs to measure their synergistic effects. Results: Highly significant synergism was detected between both extracts and each of antifungal drugs. Curcumin extract was more potent than pomegranate extract. Conclusion: When used in combination with nystatin and fluconazole, curcumin and pomegranate peel extracts are promising and effective anti-Candida agents.

scholarly journals Species identification of Candida isolated from clinical specimens in a tertiary care hospital

2016 ◽  
Vol 9 (1) ◽  
pp. 20 ◽  
Author(s):  
Lsmet Nigar ◽  
Shirin Tarafder ◽  
Rehana Razzak Khan ◽  
S. M. Ali Ahmed ◽  
Ahmed Abu Saleh
Keyword(s):  
Candida Albicans ◽  
Candida Species ◽  
Tertiary Care ◽  
Clinical Manifestations ◽  
Common Species ◽  
Blood Stream ◽  
Care Hospital ◽  
Emerging Pathogens ◽  
Predisposing Factor ◽  
Clinical Specimens

<p><strong>Background:</strong> Candida species are responsible for various clinical manifestations from mucocutaneous overgrowth to blood stream infections especially in immunocompromized situations. Although C. albicans is the most prevalent species, high incidence of non-albicans Candida species with antifungal resistance are emerging which is posing a serious threat to the patients care.</p><p><strong>Objective:</strong> This study aimed to isolate and identify different species of Candida from different clinical specimens. Methods: A total of 100 different clinical specimens were studied of which 35 were oral swab, 28 were high vaginal swab, 15 were urine, 14 were nail, 04 were bronchoalveolar lavage and peritoneal fluid were 04. Among 100 clinical specimens, Candida isolates were identified in 64 specimens. Isolation of Candida species was done by primary culture in SDA. Subsequent identification of species were performed by germ tube test, subculture in chromo­genic agar medium and carbohydrate assimilation test with commonly used twelve sugars.</p><p><strong>Results:</strong> Out of 64 isolated Candida species, Candida albicans were 51.56% and the non-albicans Candida species were 48.44%. The most prevalent Candida species was C. albicans 33 (51.53%) followed by C. tropicalis 17 (26.56%). C. glabrata 4 (6.25%), C. parapsilo­sis 4 (6.25%), C. krusei 3 (4.68%) and C. guilliermondii 2 (3.2%). One of the isolated Candida species was unidentified.</p><p><strong>Conclusion:</strong> Though Candida albicans was found as the most common species, but non-albicans Candida species are appearing as emerging pathogens as well. Exposure to chemotherapy appeared to be the commonest predisposing factor for Candida infection followed by indwelling urinary catheter in situ for prolong period.</p>

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