scholarly journals Multicellular Agent-Based Models of Angiogenesis Evaluate Endothelial Cell Signaling and the Role of Pericytes in Vascular Network Patterning

2015 ◽  
Author(s):  
Joseph Walpole
2015 ◽  
Vol 26 ◽  
pp. iii29
Author(s):  
D.A. Ferraro ◽  
R. Goosen ◽  
F. Patella ◽  
S. Zanivan ◽  
M. Buess ◽  
...  

2012 ◽  
Vol 80 (9) ◽  
pp. 3297-3306 ◽  
Author(s):  
Terry Brissac ◽  
Guillain Mikaty ◽  
Guillaume Duménil ◽  
Mathieu Coureuil ◽  
Xavier Nassif

ABSTRACTNeisseria meningitidiscrosses the blood-brain barrier (BBB) following the activation of the β2-adrenergic receptor by the type IV pili (TFP). Two components of the type IV pili recruit the β2-adrenergic receptor, the major pilin PilE and the minor pilin PilV. Here, we report that a strain deleted of PilX, one of the three minor pilins, is defective in endothelial cell signaling. The signaling role of PilX was abolished when pili were not retractable. Purified PilX was unable to recruit the β2-adrenergic receptor, thus suggesting that PilX was playing an indirect role in endothelial cell signaling. Considering the recent finding that type IV pili can transition into a new conformation (N. Biais, D. L. Higashi, J. Brujic, M. So, and M. P. Sheetz, Proc. Natl. Acad. Sci. U. S. A. 107:11358–11363, 2010), we hypothesized that PilX was responsible for a structural modification of the fiber and allowed hidden epitopes to be exposed. To confirm this hypothesis, we showed that a monoclonal antibody which recognizes a linear epitope of PilE bound fibers only when bacteria adhered to endothelial cells. On the other hand, this effect was not observed in PilX-deleted pili. A deletion of a region of PilX exposed on the surface of the fiber had phenotypical consequences identical to those of a PilX deletion. These data support a model in which surface-exposed motifs of PilX use forces generated by pilus retraction to promote conformational changes required for TFP-mediated signaling.


Author(s):  
Parantapa Bhattacharya ◽  
Dustin Machi ◽  
Jiangzhuo Chen ◽  
Stefan Hoops ◽  
Bryan Lewis ◽  
...  

2015 ◽  
Vol 125 ◽  
pp. 203-213 ◽  
Author(s):  
J. Zhang ◽  
L. Tong ◽  
P.J. Lamberson ◽  
R.A. Durazo-Arvizu ◽  
A. Luke ◽  
...  

Cells ◽  
2019 ◽  
Vol 8 (5) ◽  
pp. 389 ◽  
Author(s):  
Junfang Lyu ◽  
Eun Ju Yang ◽  
Joong Sup Shim

Cholesterol is an essential structural component of cellular membranes. In addition to the structural role, it also serves as a precursor to a variety of steroid hormones and has diverse functions in intracellular signal transduction. As one of its functions in cell signaling, recent evidence suggests that cholesterol plays a key role in regulating angiogenesis. This review discusses the role of cholesterol in angiogenesis, with a particular emphasis on cholesterol trafficking in endothelial cell signaling. Small molecule inhibitors of cholesterol trafficking and their preclinical and clinical development targeting angiogenesis and cancer are also discussed.


Author(s):  
Satish Gowda ◽  
Clavin Yeang ◽  
Fatima Anjum ◽  
sunil wadgaonkar ◽  
Natalia Grinkina ◽  
...  

Author(s):  
Jakub Bijak ◽  
Jason Hilton

AbstractBetter understanding of the behaviour of agent-based models, aimed at embedding them in the broader, model-based line of scientific enquiry, requires a comprehensive framework for analysing their results. Seeing models as tools for experimenting in silico, this chapter discusses the basic tenets and techniques of uncertainty quantification and experimental design, both of which can help shed light on the workings of complex systems embedded in computational models. In particular, we look at: relationships between model inputs and outputs, various types of experimental design, methods of analysis of simulation results, assessment of model uncertainty and sensitivity, which helps identify the parts of the model that matter in the experiments, as well as statistical tools for calibrating models to the available data. We focus on the role of emulators, or meta-models – high-level statistical models approximating the behaviour of the agent-based models under study – and in particular, on Gaussian processes (GPs). The theoretical discussion is illustrated by applications to the Routes and Rumours model of migrant route formation introduced before.


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