scholarly journals Flavivirus Species Recognition Based On the Polyprotein Coding Sequences

2019 ◽  
Vol 14 (2) ◽  
pp. 533-542
Author(s):  
M.B. Chaley ◽  
Zh.S. Tyulko ◽  
V.A. Kutyrkin
Keyword(s):  
West Nile Virus ◽  
Amino Acid ◽  
Sequence Analysis ◽  
Dengue Virus ◽  
Genome Sequence ◽  
High Reliability ◽  
Species Recognition ◽  
Frequency Characteristics ◽  
Coding Sequences ◽  
Genome Sequence Analysis

Method recognizing the flavivirus species, including a subtype recognition, that based on the genome sequence analysis, is proposed. This method takes into consideration frequency characteristics of amino acid codons in the coding sequences of full-length polyprotein of flavivirus genomes. High reliability of the method is proved in recognizing flavivirus genomes from 15 groups of different species and sub-types, that are sufficiently represented in the GenBank database. Ten various species of the flaviviruses, four sub-types of Dengue virus and Kunjin virus, that is suggested to be a sub-type of West Nile virus, are considered in the work.

The complete genome sequence analysis of West Nile virus strains isolated in Slovakia (central Europe)

2018 ◽  
Vol 164 (1) ◽  
pp. 273-277
Author(s):  
Petra Drzewnioková ◽  
Luisa Barzon ◽  
Elisa Franchin ◽  
Enrico Lavezzo ◽  
Tamás Bakonyi ◽  
...  
Keyword(s):  
West Nile Virus ◽  
Sequence Analysis ◽  
Central Europe ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
West Nile ◽  
Genome Sequence Analysis ◽  
Complete Genome Sequence Analysis ◽  
Virus Strains

scholarly journals Whole genome sequence analysis of serum amino acid levels

2016 ◽  
Vol 17 (1) ◽  
Author(s):  
Bing Yu ◽  
Paul S. de Vries ◽  
Ginger A. Metcalf ◽  
Zhe Wang ◽  
Elena V. Feofanova ◽  
...  
Keyword(s):  
Amino Acid ◽  
Sequence Analysis ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genome Sequence Analysis ◽  
Amino Acid Levels

scholarly journals Genome Sequence Analysis of Dengue Virus 1 Isolated in Key West, Florida

PLoS ONE ◽  
2013 ◽  
Vol 8 (9) ◽  
pp. e74582 ◽  
Author(s):  
Dongyoung Shin ◽  
Stephanie L. Richards ◽  
Barry W. Alto ◽  
David J. Bettinardi ◽  
Chelsea T. Smartt
Keyword(s):  
Sequence Analysis ◽  
Dengue Virus ◽  
Genome Sequence ◽  
Genome Sequence Analysis ◽  
Key West

scholarly journals Recurrent Mycobacterium chelonae Skin Infection Unmasked as Factitious Disorder Using Bacterial Whole Genome Sequence Analysis

2020 ◽  
Vol 7 (11) ◽  
Author(s):  
Sarah Flohr ◽  
Alban Ramette ◽  
Philipp K A Agyeman ◽  
Andrea Duppenthaler ◽  
Cordula Scherer ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Surgical Therapy ◽  
Skin Infection ◽  
Whole Genome Sequence ◽  
Factitious Disorder ◽  
Whole Genome ◽  
Mycobacterium Chelonae ◽  
Genome Sequence Analysis ◽  
Adequate Therapy

Abstract Mycobacterium chelonae infections usually resolve with adequate therapy. We report the case of an adolescent with a chronic and progressive M chelonae infection refractory to combined antimicrobial and surgical therapy. Whole genome sequence analysis of consecutive isolates distinguished reinfection from recurrence and contributed to the diagnosis of a factitious disorder.

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