Comparative genome sequence analysis of Sulfolobus acidocaldarius and 9 other isolates of its genus for factors influencing codon and amino acid usage

Gene ◽  
2013 ◽  
Vol 513 (1) ◽  
pp. 163-173 ◽  
Author(s):  
Kinshuk Chandra Nayak
Keyword(s):  
Amino Acid ◽  
Sequence Analysis ◽  
Genome Sequence ◽  
Sulfolobus Acidocaldarius ◽  
Amino Acid Usage ◽  
Genome Sequence Analysis ◽  
Comparative Genome ◽  
Factors Influencing

scholarly journals Flavivirus Species Recognition Based On the Polyprotein Coding Sequences

2019 ◽  
Vol 14 (2) ◽  
pp. 533-542
Author(s):  
M.B. Chaley ◽  
Zh.S. Tyulko ◽  
V.A. Kutyrkin
Keyword(s):  
West Nile Virus ◽  
Amino Acid ◽  
Sequence Analysis ◽  
Dengue Virus ◽  
Genome Sequence ◽  
High Reliability ◽  
Species Recognition ◽  
Frequency Characteristics ◽  
Coding Sequences ◽  
Genome Sequence Analysis

Method recognizing the flavivirus species, including a subtype recognition, that based on the genome sequence analysis, is proposed. This method takes into consideration frequency characteristics of amino acid codons in the coding sequences of full-length polyprotein of flavivirus genomes. High reliability of the method is proved in recognizing flavivirus genomes from 15 groups of different species and sub-types, that are sufficiently represented in the GenBank database. Ten various species of the flaviviruses, four sub-types of Dengue virus and Kunjin virus, that is suggested to be a sub-type of West Nile virus, are considered in the work.

scholarly journals Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

2011 ◽  
Vol 12 (4) ◽  
Author(s):  
Christian P Kubicek ◽  
Alfredo Herrera-Estrella ◽  
Verena Seidl-Seiboth ◽  
Diego A Martinez ◽  
Irina S Druzhinina ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Life Style ◽  
Genome Sequence Analysis ◽  
Comparative Genome

scholarly journals Comparative Genome Sequence Analysis of Choristoneura occidentalis Freeman and C. rosaceana Harris (Lepidoptera: Tortricidae) Alphabaculoviruses

PLoS ONE ◽  
2013 ◽  
Vol 8 (7) ◽  
pp. e68968 ◽  
Author(s):  
David K. Thumbi ◽  
Catherine Béliveau ◽  
Michel Cusson ◽  
Renée Lapointe ◽  
Christopher J. Lucarotti
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Choristoneura Occidentalis ◽  
Genome Sequence Analysis ◽  
Comparative Genome

scholarly journals Whole genome sequence analysis of serum amino acid levels

2016 ◽  
Vol 17 (1) ◽  
Author(s):  
Bing Yu ◽  
Paul S. de Vries ◽  
Ginger A. Metcalf ◽  
Zhe Wang ◽  
Elena V. Feofanova ◽  
...  
Keyword(s):  
Amino Acid ◽  
Sequence Analysis ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genome Sequence Analysis ◽  
Amino Acid Levels
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