scholarly journals A molecular evidence for the presence of methylobacterial-type Fe siderophore receptor in Celosia cristata

2010 ◽  
Vol 56 (No. 3) ◽  
pp. 133-138
Author(s):  
A. Gholizadeh ◽  
B.B. Kohnehrouz

The presence of efficient iron-uptake bacteria was predicted to be localized as endosymbionts within the leaves of <I>Celosia cristata</I>, a well known iron-rich plant. On the other hand, the symbiotic methylobacterium having a distinctive pink pigmentation was suggested to be more likely in the leaves of pink-colored plants. These considerations were experimented by priming a cDNA fragment containing methylobacterial-type Fe siderophore receptor domain from <I>Celosia</I> leaf cDNA population. Since no detectable homologue was found in plant species sequenced to date, the presence of a Fe-efficient methylobacterium endosymbiosis was reliably predicted in <I>Celosia</I> plant. This is the first report that may lead to the way for future studies on molecular interactions between high iron content pink-colored plants and iron-efficient pink-pigmented bacteria. Corresponding cDNA sequence was submitted to EMBL databases under accession number FM955594.

Plant Disease ◽  
2020 ◽  
Author(s):  
Xiao-Jian Qu ◽  
Shou-Jin Fan

Common morning-glory (Ipomoea purpurea (L.) Roth, Convolvulaceae), an annual herbaceous vine native to South America, was first recorded to be cultivated in China in 1890, and since then it has invaded all provinces of China. It was one of the 18 alien invasive species in China (MEE. 2014). As an invasive weed, it can readily invade dry lands, orchards, and nurseries and compete for sunlight by wrapping other plants. On 20 September 2019 and 18 July 2020, I. purpurea was found to be parasitized by a dodder species (also Convolvulaceae) in Lushan Mountain (36°21′N, 118°3′E, 569 m elevation), Shandong province, China (Fig. S1). Within and area of ca. 100 m2, dozens of individuals of common morning-glory were parasitized by the leafless stems of dodder. After removal of the haustrial connection of the dodder stem from the I. purpurea stem, brownish black lesions around uneven holes were visible on the I. purpurea stem, with broken haustoria clearly visible to our naked eye remaining in the I. purpurea stem (Fig. S1). Anatomical results showed that the haustoria of dodder penetrate I. purpurea stem and xylem elements connect the vascular systems of both the parasitic and host plant (Fig. S1). Based on morphological characteristics of stems, inflorescences, calyx, corolla, stamens, and capsules as described in Costea et al. (2006), this dodder was identified as Cuscuta campestris Yunck. (i.e., field dodder). Field dodder is readily distinguished from C. chinensis and C. australis in China by the capsules with persistent corollas enveloping 1/3 or less of its base and the spreading and inflexed corolla lobes with acute to acuminate apices. In order to further confirm the identity of the species, total genomic DNA was extracted and sequenced using genome-skimming method as described in Qu et al. (2019). An 831-bp region of 18S-ITS1-5.8S-ITS2-26S for the dodder studied was assembled, examined, and deposited in GenBank under accession number MN718805. The new sequence has 100% similarity with other available sequences of C. campestris (accession number: KT383104, KT383150, KY968857). Phylogenetic analysis also placed the new dodder accession with other accessions of C. campestris (Fig. S2a). In addition, the plastome sequence of the dodder studied was assembled (86,727 bp in length) and deposited in GenBank under accession number MN708214, and a BLAST analysis found that it was 99.98% similar to that of C. gronovii (accession number: AM711639). The plastome of C. gronovii was published by Funk et al. (2007). However, Costea et al. (2015) indicated that Funk et al. (2007) misidentified C. campestris as C. gronovii. Furthermore, our phylogenetic tree strongly supported the identification of the dodder studied as C. campestris (Fig. S2b). Therefore, the dodder on common morning-glory in Shandong province was finally identified as C. campestris according to morphological and molecular evidence. The specimen of C. campestris on I. purpurea was deposited at the herbarium of the College of Life Sciences, Shandong Normal University (voucher number: 092012B). Field dodder, the second most common dodder species in North America, is the most widespread Cuscuta weed in the world and has been found in Africa, Asia, Australia, Europe, and South America (Holm et al. 1997). To our knowledge, this is the first report of the parasitic invasive weed C. campestris parasitizing the invasive weed I. purpurea in Shandong of China. This is also the first report of Cuscuta species parasitizing confamilial Ipomoea species, which is especially noteworthy given that the genus Cuscuta is sister to the genus Ipomoea. This study provides a good model for exploring gene flow between species of closely related genera with different lifestyle. Another implication of this study is that customs and departments of inspection and quarantine need to quarantine the seeds or plants of both dodders and common morning-glories.


2019 ◽  
Vol 9 (5) ◽  
pp. 4334-4339 ◽  

This study focused on isolation and molecular identification of marine bacteria which producing bioactive pigment. For that, 10 pigmented bacteria were isolated from 3 water samples collected from Mediterranean Sea, Alex., Egypt. One isolate was had efficient value to produce blue green pigment. This one was identified using molecular biology techniques and recorded in GeneBank under title of Pseudomonas aeruginosa strain OSh1 with accession number KT032066. The produced pigment was extracted, purified and characterized as pyocyanin. The pathway of pyocyanin production contains many sequential genes, the important one is phzS. This gene was detected genetically in this study using specific primers and gave PCR product with 448 bp. To confirm that, the inducible proteins for pyocyanin synthesis genes were documented using SDS-PAGE. The results represent found 2 proteins with 36 and 43 kDa for phzM and phzS, respectively. The biological activity of the produced pyocyanin at different concentrations was investigated as antimicrobial agent. The antibacterial activity was ranged between 31- 42 mm of inhibition zone. Whereas, the inhibition zone for antifungal activity was ranged between 34- 35 mm. The results indicate the produced pyocyanin had high activity against multi-drug resistant microbes and we can use it as marine antibiotic.


F1000Research ◽  
2020 ◽  
Vol 9 ◽  
pp. 128 ◽  
Author(s):  
Benito Mendoza ◽  
Nelly Guananga ◽  
Jesus R. Melendez ◽  
Daniel A. Lowy

Although iron is not contained by chlorophyll, it is indispensable for plants as it plays an essential role in the biosynthesis of chlorophyll. It is a component of many important plant enzyme systems, e.g. cytochrome oxidase, which is responsible for electron transport. Therefore, examining iron content of soils, particularly ionic forms of iron (Fe2+ and Fe3+) is important for fruit growers. In this article, we disclose the total iron content determined in soils (Hyperalic Alisol soil) at three altitudes of Amazonian rainforest in Ecuador. We examine how different altitudes impact the pH and total iron content in the selected study area. We found that total iron content significantly decreases (R2=0.966) at lower altitudes. For future studies, the authors recommend that along with Fe ion content one should determine calcium, microbial biomass, and microbial activity to better understand iron mobility and dynamics of iron uptake in the area.


2020 ◽  
Vol 71 (4) ◽  
pp. 518 ◽  
Author(s):  
Douglas Bearham ◽  
Myrto Robert ◽  
Jennifer A. Chaplin ◽  
Glenn I. Moore ◽  
David V. Fairclough ◽  
...  

The discovery and identification of species is fundamental to the documentation, conservation and management of biodiversity. The taxonomy of the antitropical Pseudocaranx dentex complex (Carangidae) is confused and inconsistently reported. Previous morphological analyses concluded that this complex consisted of three species, namely P. sp. ‘dentex’, P. georgianus and P. dinjerra, in Australian waters. This study used genetic (COI sequence) and morphological data to evaluate the validity of this conclusion. The COI data showed the presence of three discrete lineages within this complex, which appear to correspond to the above-mentioned three species. They also suggested that P. sp. ‘dentex’ is closely related to, and possibly the same species as, P. dentex from southern Africa and the Mediterranean Sea. Also, the extent of morphological and geographical overlap between P. georgianus and P. dinjerra was greater than previously documented which, uncorrected, could lead to identification errors and present challenges for monitoring and management of harvested stocks of these species. By answering important taxonomic questions, our results will facilitate the proper interpretation of the results of past studies and the design of future studies of the P. dentex complex. They have also highlighted the value of molecular data for identifying species in morphologically conservative taxa.


2010 ◽  
Vol 79 (3) ◽  
pp. 1218-1224 ◽  
Author(s):  
Helena Lindgren ◽  
Marie Honn ◽  
Emelie Salomonsson ◽  
Kerstin Kuoppa ◽  
Åke Forsberg ◽  
...  

ABSTRACTFrancisella tularensis, the causative agent of tularemia, is one of the most infectious bacterial pathogens known and is classified as a category A select agent and a facultative intracellular bacterium. WhyF. tularensissubsp.tularensiscauses a more severe form of tularemia thanF. tularensissubsp.holarcticadoes is not known. In this study, we have identified prominent phenotypic differences between the subspecies, since we found thatF. tularensissubsp.tularensisstrains contained less iron thanF. tularensissubsp.holarcticastrains. Moreover, strain SCHU S4 ofF. tularensissubsp.tularensiswas less susceptible than FSC200 and the live vaccine strain (LVS) ofF. tularensissubsp.holarcticato H2O2-induced killing. The activity of the H2O2-degrading enzyme catalase was similar between the strains, whereas the iron content affected their susceptibility to H2O2, since iron starvation renderedF. tularensissubsp.holarcticastrains more resistant to H2O2. Complementing LVS withfupA, which encodes an important virulence factor that regulates iron uptake, reduced its iron content and increased the resistance to H2O2-mediated killing. By real-time PCR, it was demonstrated that FSC200 and LVS expressed higher levels of gene transcripts related to iron uptake and storage than SCHU S4 did, and this likely explained their high iron content. Together, the results suggest thatF. tularensissubsp.tularensisstrains have restricted iron uptake and storage, which is beneficial for their resistance to H2O2-induced killing. This may be an important factor for the higher virulence of this subspecies ofF. tularensis, as reactive oxygen species, such as H2O2, are important bactericidal components during tularemia.


2003 ◽  
Vol 284 (6) ◽  
pp. C1525-C1530 ◽  
Author(s):  
Miguel Arredondo ◽  
Patricia Muñoz ◽  
Casilda V. Mura ◽  
Marco T. Núñez

Despite important advances in the understanding of copper secretion and excretion, the molecular components of intestinal copper absorption remain a mystery. DMT1, also known as Nramp2 and DCT1, is the transporter responsible for intestinal iron uptake. Electrophysiological evidence suggests that DMT1 can also be a copper transporter. Thus we examined the potential role of DMT1 as a copper transporter in intestinal Caco-2 cells. Treatment of cells with a DMT1 antisense oligonucleotide resulted in 80 and 48% inhibition of iron and copper uptake, respectively. Cells incorporated considerable amounts of copper as Cu1+, whereas Cu2+ transport was about 10-fold lower. Cu1+inhibited apical Fe2+ transport. Fe2+, but not Fe3+, effectively inhibited Cu1+ uptake. The iron content of the cells influenced both copper and iron uptake. Cells with low iron content transported fourfold more iron and threefold more copper than cells with high iron content. These results demonstrate that DMT1 is a physiologically relevant Cu1+ transporter in intestinal cells, indicating that intestinal absorption of copper and iron are intertwined.


2019 ◽  
Vol 190 (2) ◽  
pp. 632-653 ◽  
Author(s):  
Jens T Høeg ◽  
Christoph Noever ◽  
David A Rees ◽  
Keith A Crandall ◽  
Henrik Glenner

Abstract Rhizocephalans are abundant members of marine ecosystems and are important regulators of crustacean host populations. Morphological and ecological variation makes them an attractive system for evolutionary studies of advanced parasitism. Such studies have been impeded by a largely formalistic taxonomy, because rhizocephalan morphology offers no characters for a robust phylogenetic analysis. We use DNA sequence data to estimate a new phylogeny for 43 species and use this to develop a revised taxonomy for all Rhizocephala. Our taxonomy accepts 13 new or redefined monophyletic families. The traditional subdivision into the suborders Kentrogonida and Akentrogonida is abandoned, because both are polyphyletic. The three ‘classical’ kentrogonid families are also polyphyletic, including the species-rich Sacculinidae, which is split into a redefined and a new family. Most species of large families remain to be studied based on molecular evidence and are therefore still assigned to their current genus and family by default. We caution against undue generalizations from studies on model species until a more stable species-level taxonomy is also available, which requires more extensive genus- and species-level sampling with molecular tools. We briefly discuss the most promising future studies that will be facilitated by this new phylogeny-based taxonomy.


2020 ◽  
Vol 44 (5) ◽  
pp. 968-974
Author(s):  
Banu YARDIMCI ◽  
Gökmen Zafer PEKMEZCİ ◽  
Cenk Soner BÖLÜKBAŞ ◽  
Melek ÖZPİÇAK ◽  
Savaş YILMAZ ◽  
...  

In the present study, a total of 30 M. cephalus captured from the Samsun coast of the Black Sea, Turkey were examined for myxozoa infections. Different sizes of whitish and rounded cyst-like plasmodia were macroscopically detected in the liver and intestine wall of M. cephalus. Morphological and histological examinations were performed. The SSU rDNA was amplified using nested PCR and myxosporean-specific primers. The present Myxobolus species was identified as M. spinacurvatura based on the spore morphology and host/organ specificity. In the present study, morphological, histological, and molecular data on M. spinacurvatura were presented. Furthermore, BLASTn research showed that SSU rDNA sequences of M. spinacurvatura (accession number MH374629) were identical to that of the reference sequence of M. spinacurvatura (accession from AF378341) recorded previously. The current study includes the first record and molecular evidence of M. spinacurvatura infecting M. cephalus from the Turkish waters. To date, there is no report on comprehensive morphological, histopathological, and molecular data of M. spinacurvatura in M. cephalus as a typical host. Moreover, the new valid SSU rDNA sequence of M. spinacurvatura (accession number MH374629) was the second record in the GenBank. The present SSU rDNA sequence can also be used to construct a phylogenetic tree with other mugiliform-infecting Myxobolus species worldwide.


2019 ◽  
Vol 69 (2) ◽  
pp. 164-176
Author(s):  
Huseyin Bilgin Bilgic ◽  
Gulcan Kırlı Pekel ◽  
Murat Hosgor ◽  
Tulin Karagenc

Abstract Among tick-borne diseases, Ehrlichia canis and Babesia piroplasm cause important diseases in dogs where the distributions of the pathogen, vector and host overlap. The primary aim of the present study was to detect the prevalence of Babesia spp. and E. canis using PCR and reverse line blot (RLB) hybridization assay in a total of 379 samples comprising stray and owned dogs and to compare the diagnostic sensitivity of the two tests. Overall, 41.4% of dogs were infected with B. vogeli and/or E. canis as single (35.4%) and mixed (6.1%) infections. The majority of Babesia positive dogs (74.1%) were co-infected with E. canis. PCR detected a higher (P= 0.000) number of positivity in some provinces compared to RLB. To the best of our knowledge, these findings provide the first molecular evidence for the existence of B. vogeli in the Aegean Region, Turkey. The present study pinpoints the distribution and prevalence of E. canis and B. vogeli in the Aegean region of Turkey as of 2004 and as such establishes a baseline. This is of pivotal importance for future studies aimed to demonstrate changes in the dynamics of E. canis and B. vogeli infections in the region.


2005 ◽  
Vol 70 (9) ◽  
pp. 1005-1010 ◽  
Author(s):  
A. Gholizadeh ◽  
B. Baghban Kohnehrouz ◽  
I. M. Santha ◽  
M. L. Lodha ◽  
H. C. Kapoor

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