Label-free lipid contrast imaging using non-contact near-infrared photoacoustic remote sensing microscopy

2020 ◽  
Vol 45 (16) ◽  
pp. 4559 ◽  
Author(s):  
Pradyumna Kedarisetti ◽  
Nathaniel J. M. Haven ◽  
Brendon S. Restall ◽  
Matthew T. Martell ◽  
Roger J. Zemp
2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Soo-Yeon Cho ◽  
Xun Gong ◽  
Volodymyr B. Koman ◽  
Matthias Kuehne ◽  
Sun Jin Moon ◽  
...  

AbstractNanosensors have proven to be powerful tools to monitor single cells, achieving spatiotemporal precision even at molecular level. However, there has not been way of extending this approach to statistically relevant numbers of living cells. Herein, we design and fabricate nanosensor array in microfluidics that addresses this limitation, creating a Nanosensor Chemical Cytometry (NCC). nIR fluorescent carbon nanotube array is integrated along microfluidic channel through which flowing cells is guided. We can utilize the flowing cell itself as highly informative Gaussian lenses projecting nIR profiles and extract rich information. This unique biophotonic waveguide allows for quantified cross-correlation of biomolecular information with various physical properties and creates label-free chemical cytometer for cellular heterogeneity measurement. As an example, the NCC can profile the immune heterogeneities of human monocyte populations at attomolar sensitivity in completely non-destructive and real-time manner with rate of ~600 cells/hr, highest range demonstrated to date for state-of-the-art chemical cytometry.


Molecules ◽  
2021 ◽  
Vol 26 (4) ◽  
pp. 922
Author(s):  
William Querido ◽  
Shital Kandel ◽  
Nancy Pleshko

Advances in vibrational spectroscopy have propelled new insights into the molecular composition and structure of biological tissues. In this review, we discuss common modalities and techniques of vibrational spectroscopy, and present key examples to illustrate how they have been applied to enrich the assessment of connective tissues. In particular, we focus on applications of Fourier transform infrared (FTIR), near infrared (NIR) and Raman spectroscopy to assess cartilage and bone properties. We present strengths and limitations of each approach and discuss how the combination of spectrometers with microscopes (hyperspectral imaging) and fiber optic probes have greatly advanced their biomedical applications. We show how these modalities may be used to evaluate virtually any type of sample (ex vivo, in situ or in vivo) and how “spectral fingerprints” can be interpreted to quantify outcomes related to tissue composition and quality. We highlight the unparalleled advantage of vibrational spectroscopy as a label-free and often nondestructive approach to assess properties of the extracellular matrix (ECM) associated with normal, developing, aging, pathological and treated tissues. We believe this review will assist readers not only in better understanding applications of FTIR, NIR and Raman spectroscopy, but also in implementing these approaches for their own research projects.


Land ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 231
Author(s):  
Can Trong Nguyen ◽  
Amnat Chidthaisong ◽  
Phan Kieu Diem ◽  
Lian-Zhi Huo

Bare soil is a critical element in the urban landscape and plays an essential role in urban environments. Yet, the separation of bare soil and other land cover types using remote sensing techniques remains a significant challenge. There are several remote sensing-based spectral indices for barren detection, but their effectiveness varies depending on land cover patterns and climate conditions. Within this research, we introduced a modified bare soil index (MBI) using shortwave infrared (SWIR) and near-infrared (NIR) wavelengths derived from Landsat 8 (OLI—Operational Land Imager). The proposed bare soil index was tested in two different bare soil patterns in Thailand and Vietnam, where there are large areas of bare soil during the agricultural fallow period, obstructing the separation between bare soil and urban areas. Bare soil extracted from the MBI achieved higher overall accuracy of about 98% and a kappa coefficient over 0.96, compared to bare soil index (BSI), normalized different bare soil index (NDBaI), and dry bare soil index (DBSI). The results also revealed that MBI considerably contributes to the accuracy of land cover classification. We suggest using the MBI for bare soil detection in tropical climatic regions.


2013 ◽  
Vol 59 (215) ◽  
pp. 467-479 ◽  
Author(s):  
Jeffrey S. Deems ◽  
Thomas H. Painter ◽  
David C. Finnegan

AbstractLaser altimetry (lidar) is a remote-sensing technology that holds tremendous promise for mapping snow depth in snow hydrology and avalanche applications. Recently lidar has seen a dramatic widening of applications in the natural sciences, resulting in technological improvements and an increase in the availability of both airborne and ground-based sensors. Modern sensors allow mapping of vegetation heights and snow or ground surface elevations below forest canopies. Typical vertical accuracies for airborne datasets are decimeter-scale with order 1 m point spacings. Ground-based systems typically provide millimeter-scale range accuracy and sub-meter point spacing over 1 m to several kilometers. Many system parameters, such as scan angle, pulse rate and shot geometry relative to terrain gradients, require specification to achieve specific point coverage densities in forested and/or complex terrain. Additionally, snow has a significant volumetric scattering component, requiring different considerations for error estimation than for other Earth surface materials. We use published estimates of light penetration depth by wavelength to estimate radiative transfer error contributions. This paper presents a review of lidar mapping procedures and error sources, potential errors unique to snow surface remote sensing in the near-infrared and visible wavelengths, and recommendations for projects using lidar for snow-depth mapping.


Weed Science ◽  
2004 ◽  
Vol 52 (4) ◽  
pp. 492-497 ◽  
Author(s):  
E. Raymond Hunt ◽  
James E. McMurtrey ◽  
Amy E. Parker Williams ◽  
Lawrence A. Corp

Leafy spurge can be detected during flowering with either aerial photography or hyperspectral remote sensing because of the distinctive yellow-green color of the flower bracts. The spectral characteristics of flower bracts and leaves were compared with pigment concentrations to determine the physiological basis of the remote sensing signature. Compared with leaves of leafy spurge, flower bracts had lower reflectance at blue wavelengths (400 to 500 nm), greater reflectance at green, yellow, and orange wavelengths (525 to 650 nm), and approximately equal reflectances at 680 nm (red) and at near-infrared wavelengths (725 to 850 nm). Pigments from leaves and flower bracts were extracted in dimethyl sulfoxide, and the pigment concentrations were determined spectrophotometrically. Carotenoid pigments were identified using high-performance liquid chromatography. Flower bracts had 84% less chlorophylla, 82% less chlorophyllb, and 44% less total carotenoids than leaves, thus absorptance by the flower bracts should be less and the reflectance should be greater at blue and red wavelengths. The carotenoid to chlorophyll ratio of the flower bracts was approximately 1:1, explaining the hue of the flower bracts but not the value of reflectance. The primary carotenoids were lutein, β-carotene, and β-cryptoxanthin in a 3.7:1.5:1 ratio for flower bracts and in a 4.8:1.3:1 ratio for leaves, respectively. There was 10.2 μg g−1fresh weight of colorless phytofluene present in the flower bracts and none in the leaves. The fluorescence spectrum indicated high blue, red, and far-red emission for leaves compared with flower bracts. Fluorescent emissions from leaves may contribute to the higher apparent leaf reflectance in the blue and red wavelength regions. The spectral characteristics of leafy spurge are important for constructing a well-documented spectral library that could be used with hyperspectral remote sensing.


2002 ◽  
Vol 34 ◽  
pp. 81-88 ◽  
Author(s):  
Massimo Frezzotti ◽  
Stefano Gandolfi ◽  
Floriana La Marca ◽  
Stefano Urbini

AbstractAs part of the International Trans-Antarctic Scientific Expedition project, the Italian Antarctic Programme undertook two traverses from the Terra Nova station to Talos Dome and to Dome C. Along the traverses, the party carried out several tasks (drilling, glaciological and geophysical exploration). The difference in spectral response between glazed surfaces and snow makes it simple to identify these areas on visible/near-infrared satellite images. Integration of field observation and remotely sensed data allows the description of different mega-morphologic features: wide glazed surfaces, sastrugi glazed surface fields, transverse dunes and megadunes. Topography global positioning system, ground penetrating radar and detailed snow-surface surveys have been carried out, providing new information about the formation and evolution of mega-morphologic features. The extensive presence, (up to 30%) of glazed surface caused by a long hiatus in accumulation, with an accumulation rate of nil or slightly negative, has a significant impact on the surface mass balance of a wide area of the interior part of East Antarctica. The aeolian processes creating these features have important implications for the selection of optimum sites for ice coring, because orographic variations of even a few metres per kilometre have a significant impact on the snow-accumulation process. Remote-sensing surveys of aeolian macro-morphology provide a proven, high-quality method for detailed mapping of the interior of the ice sheet’s prevalent wind direction and could provide a relative indication of wind intensity.


2011 ◽  
Vol 6 (6) ◽  
pp. 652-666 ◽  
Author(s):  
Anusha Ashokan ◽  
Parwathy Chandran ◽  
Aparna R. Sadanandan ◽  
Chaitanya K. Koduri ◽  
Archana P. Retnakumari ◽  
...  

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Rachel M. Lee ◽  
Michele I. Vitolo ◽  
Wolfgang Losert ◽  
Stuart S. Martin

AbstractRecent evidence suggests that groups of cells are more likely to form clinically dangerous metastatic tumors, emphasizing the importance of understanding mechanisms underlying collective behavior. The emergent collective behavior of migrating cell sheets in vitro has been shown to be disrupted in tumorigenic cells but the connection between this behavior and in vivo tumorigenicity remains unclear. We use particle image velocimetry to measure a multidimensional migration phenotype for genetically defined human breast epithelial cell lines that range in their in vivo behavior from non-tumorigenic to aggressively metastatic. By using cells with controlled mutations, we show that PTEN deletion enhances collective migration, while Ras activation suppresses it, even when combined with PTEN deletion. These opposing effects on collective migration of two mutations that are frequently found in patient tumors could be exploited in the development of novel treatments for metastatic disease. Our methods are based on label-free phase contrast imaging, and thus could easily be applied to patient tumor cells. The short time scales of our approach do not require potentially selective growth, and thus in combination with label-free imaging would allow multidimensional collective migration phenotypes to be utilized in clinical assessments of metastatic potential.


2021 ◽  
Author(s):  
Pradyumna Kedarisetti ◽  
Brendon Restall ◽  
Nathaniel Haven ◽  
Matthew Martell ◽  
Brendyn Cikaluk ◽  
...  

2020 ◽  
pp. 35
Author(s):  
M. Campos-Taberner ◽  
F.J. García-Haro ◽  
B. Martínez ◽  
M.A. Gilabert

<p class="p1">The use of deep learning techniques for remote sensing applications has recently increased. These algorithms have proven to be successful in estimation of parameters and classification of images. However, little effort has been made to make them understandable, leading to their implementation as “black boxes”. This work aims to evaluate the performance and clarify the operation of a deep learning algorithm, based on a bi-directional recurrent network of long short-term memory (2-BiLSTM). The land use classification in the Valencian Community based on Sentinel-2 image time series in the framework of the common agricultural policy (CAP) is used as an example. It is verified that the accuracy of the deep learning techniques is superior (98.6 % overall success) to that other algorithms such as decision trees (DT), k-nearest neighbors (k-NN), neural networks (NN), support vector machines (SVM) and random forests (RF). The performance of the classifier has been studied as a function of time and of the predictors used. It is concluded that, in the study area, the most relevant information used by the network in the classification are the images corresponding to summer and the spectral and spatial information derived from the red and near infrared bands. These results open the door to new studies in the field of the explainable deep learning in remote sensing applications.</p>


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