Near-infrared Hyperspectral Reflectance Imaging for Early Detection of Sour Skin Disease in Vidalia Sweet Onions

2010 ◽  
Author(s):  
Weilin Wang ◽  
Changying Li ◽  
Ron Gitaitis ◽  
E W Tollner ◽  
Glen Rains ◽  
...  
Keyword(s):  
Early Detection ◽  
Skin Disease ◽  
Near Infrared ◽  
Hyperspectral Reflectance ◽  
Sour Skin

scholarly journals Ganoderma boninense Disease Detection by Near-Infrared Spectroscopy Classification: A Review

Sensors ◽  
2021 ◽  
Vol 21 (9) ◽  
pp. 3052
Author(s):  
Mas Ira Syafila Mohd Hilmi Tan ◽  
Mohd Faizal Jamlos ◽  
Ahmad Fairuz Omar ◽  
Fatimah Dzaharudin ◽  
Suramate Chalermwisutkul ◽  
...  
Keyword(s):  
Infrared Spectroscopy ◽  
Early Detection ◽  
Near Infrared Spectroscopy ◽  
Near Infrared ◽  
Predictive Analytics ◽  
Detection System ◽  
Imaging Techniques ◽  
Ganoderma Boninense ◽  
Machine Learning Classification ◽  
Detection Techniques

Ganoderma boninense (G. boninense) infection reduces the productivity of oil palms and causes a serious threat to the palm oil industry. This catastrophic disease ultimately destroys the basal tissues of oil palm, causing the eventual death of the palm. Early detection of G. boninense is vital since there is no effective treatment to stop the continuing spread of the disease. This review describes past and future prospects of integrated research of near-infrared spectroscopy (NIRS), machine learning classification for predictive analytics and signal processing towards an early G. boninense detection system. This effort could reduce the cost of plantation management and avoid production losses. Remarkably, (i) spectroscopy techniques are more reliable than other detection techniques such as serological, molecular, biomarker-based sensor and imaging techniques in reactions with organic tissues, (ii) the NIR spectrum is more precise and sensitive to particular diseases, including G. boninense, compared to visible light and (iii) hand-held NIRS for in situ measurement is used to explore the efficacy of an early detection system in real time using ML classifier algorithms and a predictive analytics model. The non-destructive, environmentally friendly (no chemicals involved), mobile and sensitive leads the NIRS with ML and predictive analytics as a significant platform towards early detection of G. boninense in the future.

scholarly journals Exploring personalized postoperative non-invasive tissue oximetry in DIEP flap breast reconstruction

2021 ◽  
Author(s):  
Anouk A. M. A. Lindelauf ◽  
Nousjka P. A. Vranken ◽  
Rutger M. Schols ◽  
Esther A. C. Bouman ◽  
Patrick W. Weerwind ◽  
...  
Keyword(s):  
Early Detection ◽  
Breast Reconstruction ◽  
Near Infrared ◽  
Diep Flap ◽  
Baseline Measurement ◽  
Flap Surgery ◽  
Level Of Evidence ◽  
Non Invasive ◽  
Vascular Compromise ◽  
Tissue Oximetry

Abstract Early detection of vascular compromise after autologous breast reconstruction is crucial to enable timely re-exploration for flap salvage. Several studies proposed non-invasive tissue oximetry for early identification of ischemia of deep inferior epigastric perforator (DIEP) flaps. The present study aimed to explore the utility of non-invasive tissue oximetry following DIEP flap surgery using a personalized oxygenation threshold. Methods Patients undergoing immediate/delayed DIEP flap surgery were included in this prospective observational study. DIEP flap tissue oxygenation (StO2) was monitored continuously using near-infrared spectroscopy. A baseline measurement was performed by positioning one sensor at the marked position of the major inferior epigastric perforator on the abdomen. A new sensor was positioned postoperatively on the transplanted tissue. In unilateral procedures, postoperative StO2 values of the native breast were also obtained. Measurements were continued for 24 h. Results Thirty patients (42 flaps) were included. Fourteen patients (46.7%) had an uncomplicated postoperative course. A minor complication was observed in thirteen patients; in five patients, at least one major complication occurred, requiring re-exploration. Median StO2 readings were significantly lower in patients with major complications compared to uncomplicated cases. In fourteen unilateral DIEP flap procedures, StO2 values of the native breast were similar to the preoperative baseline measurement (92%; p = 0.452). Conclusions Non-invasive tissue oximetry following DIEP flap surgery could aid in early detection of vascular compromise. StO2 values of the native breast and abdominal wall preoperatively can be used interchangeably and can serve as personalized reference value. Level of evidence: Level IV, diagnostic / prognostic study.

scholarly journals Early Detection of Plant Viral Disease Using Hyperspectral Imaging and Deep Learning

Sensors ◽  
2021 ◽  
Vol 21 (3) ◽  
pp. 742
Author(s):  
Canh Nguyen ◽  
Vasit Sagan ◽  
Matthew Maimaitiyiming ◽  
Maitiniyazi Maimaitijiang ◽  
Sourav Bhadra ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Early Detection ◽  
Convolutional Neural Network ◽  
Near Infrared ◽  
Hyperspectral Data ◽  
Viral Diseases ◽  
Support Vector ◽  
Spectral Features ◽  
Feature Spaces

Early detection of grapevine viral diseases is critical for early interventions in order to prevent the disease from spreading to the entire vineyard. Hyperspectral remote sensing can potentially detect and quantify viral diseases in a nondestructive manner. This study utilized hyperspectral imagery at the plant level to identify and classify grapevines inoculated with the newly discovered DNA virus grapevine vein-clearing virus (GVCV) at the early asymptomatic stages. An experiment was set up at a test site at South Farm Research Center, Columbia, MO, USA (38.92 N, −92.28 W), with two grapevine groups, namely healthy and GVCV-infected, while other conditions were controlled. Images of each vine were captured by a SPECIM IQ 400–1000 nm hyperspectral sensor (Oulu, Finland). Hyperspectral images were calibrated and preprocessed to retain only grapevine pixels. A statistical approach was employed to discriminate two reflectance spectra patterns between healthy and GVCV vines. Disease-centric vegetation indices (VIs) were established and explored in terms of their importance to the classification power. Pixel-wise (spectral features) classification was performed in parallel with image-wise (joint spatial–spectral features) classification within a framework involving deep learning architectures and traditional machine learning. The results showed that: (1) the discriminative wavelength regions included the 900–940 nm range in the near-infrared (NIR) region in vines 30 days after sowing (DAS) and the entire visual (VIS) region of 400–700 nm in vines 90 DAS; (2) the normalized pheophytization index (NPQI), fluorescence ratio index 1 (FRI1), plant senescence reflectance index (PSRI), anthocyanin index (AntGitelson), and water stress and canopy temperature (WSCT) measures were the most discriminative indices; (3) the support vector machine (SVM) was effective in VI-wise classification with smaller feature spaces, while the RF classifier performed better in pixel-wise and image-wise classification with larger feature spaces; and (4) the automated 3D convolutional neural network (3D-CNN) feature extractor provided promising results over the 2D convolutional neural network (2D-CNN) in learning features from hyperspectral data cubes with a limited number of samples.

scholarly journals Spectroscopic detection of forest diseases: a review (1970–2020)

2021 ◽  
Author(s):  
Lorenzo Cotrozzi
Keyword(s):  
Early Detection ◽  
Optical Sensors ◽  
Near Infrared ◽  
Sustainable Forest Management ◽  
Visible Spectrum ◽  
Cost Effective ◽  
Infrared Region ◽  
Forest Disturbances ◽  
Effective Manner ◽  
Forest Diseases

AbstractSustainable forest management is essential to confront the detrimental impacts of diseases on forest ecosystems. This review highlights the potential of vegetation spectroscopy in improving the feasibility of assessing forest disturbances induced by diseases in a timely and cost-effective manner. The basic concepts of vegetation spectroscopy and its application in phytopathology are first outlined then the literature on the topic is discussed. Using several optical sensors from leaf to landscape-level, a number of forest diseases characterized by variable pathogenic processes have been detected, identified and quantified in many country sites worldwide. Overall, these reviewed studies have pointed out the green and red regions of the visible spectrum, the red-edge and the early near-infrared as the spectral regions most sensitive to the disease development as they are mostly related to chlorophyll changes and symptom development. Late disease conditions particularly affect the shortwave-infrared region, mostly related to water content. This review also highlights some major issues to be addressed such as the need to explore other major forest diseases and geographic areas, to further develop hyperspectral sensors for early detection and discrimination of forest disturbances, to improve devices for remote sensing, to implement long-term monitoring, and to advance algorithms for exploitation of spectral data. Achieving of these goals will enhance the capability of vegetation spectroscopy in early detection of forest stress and in managing forest diseases.

scholarly journals Near infrared hyperspectral dataset of healthy and infected apple tree leaves images for the early detection of apple scab disease

Data in Brief ◽  
2018 ◽  
Vol 16 ◽  
pp. 967-971 ◽  
Author(s):  
Maroua Nouri ◽  
Nathalie Gorretta ◽  
Pierre Vaysse ◽  
Michel Giraud ◽  
Christian Germain ◽  
...  
Keyword(s):  
Early Detection ◽  
Near Infrared ◽  
Apple Tree ◽  
Apple Scab ◽  
Tree Leaves

scholarly journals A Gated Recurrent Units (GRU)-Based Model for Early Detection of Soybean Sudden Death Syndrome through Time-Series Satellite Imagery

2020 ◽  
Vol 12 (21) ◽  
pp. 3621
Author(s):  
Luning Bi ◽  
Guiping Hu ◽  
Muhammad Mohsin Raza ◽  
Yuba Kandel ◽  
Leonor Leandro ◽  
...  
Keyword(s):  
Time Series ◽  
Early Detection ◽  
Sudden Death ◽  
Near Infrared ◽  
Time Series Data ◽  
Sudden Death Syndrome ◽  
Plant Diseases ◽  
Series Data ◽  
Detection Accuracy ◽  
Test Accuracy

In general, early detection and timely management of plant diseases are essential for reducing yield loss. Traditional manual inspection of fields is often time-consuming and laborious. Automated imaging techniques have recently been successfully applied to detect plant diseases. However, these methods mostly focus on the current state of the crop. This paper proposes a gated recurrent unit (GRU)-based model to predict soybean sudden death syndrome (SDS) disease development. To detect SDS at a quadrat level, the proposed method uses satellite images collected from PlanetScope as the training set. The pixel image data include the spectral bands of red, green, blue and near-infrared (NIR). Data collected during the 2016 and 2017 soybean-growing seasons were analyzed. Instead of using individual static imagery, the GRU-based model converts the original imagery into time-series data. SDS predictions were made on different data scenarios and the results were compared with fully connected deep neural network (FCDNN) and XGBoost methods. The overall test accuracy of classifying healthy and diseased quadrates in all methods was above 76%. The test accuracy of the FCDNN and XGBoost were 76.3–85.5% and 80.6–89.2%, respectively, while the test accuracy of the GRU-based model was 82.5–90.4%. The calculation results show that the proposed method can improve the detection accuracy by up to 7% with time-series imagery. Thus, the proposed method has the potential to predict SDS at a future time.

scholarly journals Deriving seasonal dynamics in ecosystem properties of semi-arid savanna grasslands from in situ-based hyperspectral reflectance

2015 ◽  
Vol 12 (15) ◽  
pp. 4621-4635 ◽  
Author(s):  
T. Tagesson ◽  
R. Fensholt ◽  
S. Huber ◽  
S. Horion ◽  
I. Guiro ◽  
...  
Keyword(s):  
Seasonal Dynamics ◽  
Near Infrared ◽  
Spectral Characteristics ◽  
Arid Ecosystems ◽  
Hyperspectral Reflectance ◽  
Data Set ◽  
Ecosystem Properties ◽  
Shortwave Infrared ◽  
Semi Arid

Abstract. This paper investigates how hyperspectral reflectance (between 350 and 1800 nm) can be used to infer ecosystem properties for a semi-arid savanna grassland in West Africa using a unique in situ-based multi-angular data set of hemispherical conical reflectance factor (HCRF) measurements. Relationships between seasonal dynamics in hyperspectral HCRF and ecosystem properties (biomass, gross primary productivity (GPP), light use efficiency (LUE), and fraction of photosynthetically active radiation absorbed by vegetation (FAPAR)) were analysed. HCRF data (ρ) were used to study the relationship between normalised difference spectral indices (NDSIs) and the measured ecosystem properties. Finally, the effects of variable sun sensor viewing geometry on different NDSI wavelength combinations were analysed. The wavelengths with the strongest correlation to seasonal dynamics in ecosystem properties were shortwave infrared (biomass), the peak absorption band for chlorophyll a and b (at 682 nm) (GPP), the oxygen A band at 761 nm used for estimating chlorophyll fluorescence (GPP and LUE), and blue wavelengths (ρ412) (FAPAR). The NDSI with the strongest correlation to (i) biomass combined red-edge HCRF (ρ705) with green HCRF (ρ587), (ii) GPP combined wavelengths at the peak of green reflection (ρ518, ρ556), (iii) LUE combined red (ρ688) with blue HCRF (ρ436), and (iv) FAPAR combined blue (ρ399) and near-infrared (ρ1295) wavelengths. NDSIs combining near infrared and shortwave infrared were strongly affected by solar zenith angles and sensor viewing geometry, as were many combinations of visible wavelengths. This study provides analyses based upon novel multi-angular hyperspectral data for validation of Earth-observation-based properties of semi-arid ecosystems, as well as insights for designing spectral characteristics of future sensors for ecosystem monitoring.

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