scholarly journals Near infrared hyperspectral images and pattern recognition techniques used to identify etiological agents of cotton anthracnose and ramulosis

2018 ◽  
Author(s):  
Priscila Aires ◽  
Francisco Gambarra-Neto ◽  
Wirton Coutinho ◽  
Alderi Araujo ◽  
Gilvan da Silva ◽  
...  
Keyword(s):  
Pattern Recognition ◽  
Near Infrared ◽  
Intergenic Spacer ◽  
Linear Discriminant ◽  
Intergenic Spacer Region ◽  
Standard Normal Variate ◽  
Standard Normal ◽  
Etiological Agents ◽  
Speed Accuracy ◽  
Non Destructive

Hyperspectral imaging near infrared (HSI-NIR) has the potential to be used as a non-destructive approach for the analysis of new microbiological matrices of agriculture interest. This article describes a new method for accurately and rapidly classifying the etiological agents Colletotrichum gossypii (CG) and C. gossypii var. cephalosporioides (CGC) grown in a culture medium, using scattering reflectance HSI-NIR and multivariate pattern recognition analysis. Five strains of CG and 46 strains of CGC were used. CG and CGC strains were grown on Czapek-agar medium at 25 °C under a 12-hour photoperiod for 15 days. Molecular identification was performed as a reference for the CG and CGC classes by polymerase chain reaction of the intergenic spacer region of rDNA. The scattering coefficient µs and the absorption coefficient µa were obtained, which resulted in a µs value for CG of 1.37 × 1019 and for CGC of 5.83 × 10–11. These results showed that the use of the standard normal variate was no longer essential and reduced the spectral range from 1000–2500 nm to 1000–1381 nm. The results evidenced two type II errors for the CG 457-2 and CGC 39 samples in the soft independent modelling model of the analogy model. There were no classification errors using the algorithm of the successive projections for variable selection in linear discriminant analysis (SPA-LDA). A parallel validation of the results obtained with SPA-LDA was performed using a box plot analysis with the 11 variables selected by SPA, in which there were no outliers for the HSI-NIR models. The new HSI-NIR and SPA-LDA procedures for the classification of CG and CGC etiological agents are noted for their greater analytical speed, accuracy, simplicity, lower cost and non-destructive nature.

scholarly journals Application of calibrations to hyperspectral images of food grains: example for wheat falling number

2017 ◽  
Author(s):  
Nicola Caporaso ◽  
Martin Whitworth ◽  
Ian Fisk
Keyword(s):  
Near Infrared ◽  
Nir Spectroscopy ◽  
Classification Model ◽  
Least Squares Regression ◽  
Falling Number ◽  
Linear Discriminant ◽  
Standard Normal Variate ◽  
Average Spectrum ◽  
Standard Normal ◽  
Improved Performance

The presence of a few kernels with sprouting problems in a batch of wheat can result in enzymatic activity sufficient to compromise flour functionality and bread quality. This is commonly assessed using the Hagberg Falling Number (HFN) method, which is a batch analysis. Hyperspectral imaging (HSI) can provide analysis at the single grain level with potential for improved performance. The present paper deals with the development and application of calibrations obtained using an HSI system working in the near infrared (NIR) region (~900–2500 nm) and reference measurements of HFN. A partial least squares regression calibration has been built using 425 wheat samples with a HFN range of 62–318 s, including field and laboratory pre-germinated samples placed under wet conditions. Two different approaches were tested to apply calibrations: i) application of the calibration to each pixel, followed by calculation of the average of the resulting values for each object (kernel); ii) calculation of the average spectrum for each object, followed by application of the calibration to the mean spectrum. The calibration performance achieved for HFN (R2 = 0.6; RMSEC ~ 50 sRMSEP ~ 63 s) compares favourably with other studies using NIR spectroscopy. Linear spectral pre-treatments lead to similar results when applying the two methods, while non-linear treatments such as standard normal variate showed obvious differences between these approaches. A classification model based on linear discriminant analysis (LDA) was also applied to segregate wheat kernels into low (<250 s) and high (>250 s) HFN groups. LDA correctly classified 86.4% of the samples, with a classification accuracy of 97.9% when using an HFN threshold of 150 s. These results are promising in terms of wheat quality assessment using a rapid and non-destructive technique which is able to analyse wheat properties on a single-kernel basis, and to classify samples as acceptable or unacceptable for flour production.

scholarly journals Fast and Green Method to Control Frauds of Geographical Origin in Traded Cuttlefish Using a Portable Infrared Reflective Instrument

Foods ◽  
2021 ◽  
Vol 10 (8) ◽  
pp. 1678
Author(s):  
Sarah Currò ◽  
Stefania Balzan ◽  
Lorenzo Serva ◽  
Luciano Boffo ◽  
Jacopo Carlo Ferlito ◽  
...  
Keyword(s):  
Near Infrared ◽  
Geographical Origin ◽  
Selection Procedure ◽  
Support Vector ◽  
Central Pacific ◽  
Standard Normal Variate ◽  
The Family ◽  
Standard Normal ◽  
Central Atlantic ◽  
Non Destructive

An appropriate seafood origin identification is essential for labelling regulation but also economic and ecological issues. Near infrared (NIRS) reflectance spectroscopy was employed to assess the origins of cuttlefish caught from five fishing FAO areas (Adriatic Sea, northeastern and eastern central Atlantic Oceans, and eastern Indian and western central Pacific Oceans). A total of 727 cuttlefishes of the family Sepiidae (Sepia officinalis and Sepiella inermis) were collected with a portable spectrophotometer (902–1680 nm) in a wholesale fish plant. NIR spectra were treated with standard normal variate, detrending, smoothing, and second derivative before performing chemometric approaches. The random forest feature selection procedure was executed to select the most significative wavelengths. The geographical origin classification models were constructed on the most informative bands, applying support vector machine (SVM) and nearest neighbors algorithms. The SVM showed the best performance of geographical classification through the hold-out validation according to the overall accuracy (0.92), balanced accuracy (from 0.83 to 1.00), sensitivity (from 0.67 to 1.00), and specificity (from 0.88 to 1.00). Thus, being one of the first studies on cuttlefish traceability using NIRS, the results suggest that this represents a rapid, green, and non-destructive method to support on-site, practical inspection to authenticate geographical origin and to contrast fraudulent activities of cuttlefish mislabeled as local.

scholarly journals Development of a Non-Destructive Method for Detection of the Juiciness of Pear via VIS/NIR Spectroscopy Combined with Chemometric Methods

Foods ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 1778
Author(s):  
Fan Wang ◽  
Chunjiang Zhao ◽  
Guijun Yang
Keyword(s):  
Near Infrared ◽  
External Validation ◽  
Scatter Correction ◽  
Nir Spectroscopy ◽  
Spectral Ratio ◽  
Optical Path Length ◽  
Standard Normal Variate ◽  
Length Estimation ◽  
Standard Normal ◽  
Non Destructive

Juiciness is a primary index of pear quality and freshness, which is also considered as important as sweetness for the consumers. Development of a non-destructive detection method for pear juiciness is meaningful for producers and sellers. In this study, visible−near-infrared (VIS/NIR) spectroscopy combined with different spectral preprocessing methods, including normalization (NOR), first derivative (FD), detrend (DET), standard normal variate (SNV), multiplicative scatter correction (MSC), probabilistic quotient normalization (PQN), modified optical path length estimation and correction (OPLECm), linear regression correction combined with spectral ratio (LRC-SR) and orthogonal spatial projection combined with spectral ratio (OPS-SR), was used for comparison in detection of pear juiciness. Partial least squares (PLS) regression was used to establish the calibration models between the preprocessing spectra (650–1100 nm) and juiciness measured by the texture analyzer. In addition, competitive adaptive reweighted sampling (CARS) was used to identify the characteristic wavelengths and simplify the PLS models. All obtained models were evaluated via Monte Carlo cross-validation (MCCV) and external validation. The PLS model established by 19 characteristic variables after LRC-SR preprocessing displayed the best prediction performance with external verification determination coefficient (R2v) of 0.93 and root mean square error (RMSEv) of 0.97%. The results demonstrate that VIS/NIR coupled with LRC-SR method can be a suitable strategy for the quick assessment of juiciness for pears.

scholarly journals Machine Learning-Based Prediction of Selected Parameters of Commercial Biomass Pellets Using Line Scan Near Infrared-Hyperspectral Image

Processes ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 316
Author(s):  
Lakkana Pitak ◽  
Kittipong Laloon ◽  
Seree Wongpichet ◽  
Panmanas Sirisomboon ◽  
Jetsada Posom
Keyword(s):  
Near Infrared ◽  
Hyperspectral Image ◽  
Thermal Conversion ◽  
High Energy ◽  
Volatile Matter ◽  
Successive Projections Algorithm ◽  
Color Distribution ◽  
Standard Normal Variate ◽  
Distribution Mapping ◽  
Standard Normal

Biomass pellets are required as a source of energy because of their abundant and high energy. The rapid measurement of pellets is used to control the biomass quality during the production process. The objective of this work was to use near infrared (NIR) hyperspectral images for predicting the properties, i.e., fuel ratio (FR), volatile matter (VM), fixed carbon (FC), and ash content (A), of commercial biomass pellets. Models were developed using either full spectra or different spatial wavelengths, i.e., interval successive projections algorithm (iSPA) and interval genetic algorithm (iGA), wavelengths and different spectral preprocessing techniques. Their performances were then compared. The optimal model for predicting FR could be created with second derivative (D2) spectra with iSPA-100 wavelengths, while VM, FC, and A could be predicted using standard normal variate (SNV) spectra with iSPA-100 wavelengths. The models for predicting FR, VM, FC, and A provided R2 values of 0.75, 0.81, 0.82, and 0.87, respectively. Finally, the prediction of the biomass pellets’ properties under color distribution mapping was able to track pellet quality to control and monitor quality during the operation of the thermal conversion process and can be intuitively used for applications with screening.

On the Scales Associated with Near-Infrared Reflectance Difference Spectra

1995 ◽  
Vol 49 (6) ◽  
pp. 765-772 ◽  
Author(s):  
M. S. Dhanoa ◽  
S. J. Lister ◽  
R. J. Barnes
Keyword(s):  
Near Infrared ◽  
Scatter Correction ◽  
The Other ◽  
Difference Spectra ◽  
Near Infrared Reflectance ◽  
Standard Normal Variate ◽  
Near Infrared Spectra ◽  
Standard Normal ◽  
Relationship Of ◽  
The Relationship

Scale differences of individual near-infrared spectra are identified when set-independent standard normal variate (SNV) and de-trend (DT) transformations are applied in either SNV followed by DT or DT then SNV order. The relationship of set-dependent multiplicative scatter correction (MSC) to SNV is also referred to. A simple correction factor is proposed to convert derived spectra from one order to the other. It is suggested that the suitable order for the study of changes using difference spectra (when removing baselines) should be DT followed by SNV, which leads to all derived spectra on the scale of mean zero and variance equal to one. If baselines are identical, then SNV scale spectra can be used to calculate differences.

Use of Difference near Infrared Reflectance Spectra to Extract Relevant Information from the Spectra of Agro–Food Products

1998 ◽  
Vol 6 (1) ◽  
pp. 89-95 ◽  
Author(s):  
Ana Garrido-Varo ◽  
Ronald Carrete ◽  
Víctor Fernández-Cabanás
Keyword(s):  
Near Infrared ◽  
Food Products ◽  
Relevant Information ◽  
Near Infrared Reflectance ◽  
Standard Normal Variate ◽  
Corn Gluten ◽  
Corn Gluten Feed ◽  
Standard Normal ◽  
Gluten Feed ◽  
By Products

This paper compares the use of log 1/ R versus standard normal variate (SNV) and Detrending (DT) transformations calculated either of two forms, SNV followed by DT (SNV+DT) or DT then SNV (DT+SNV) for their abilities to enhance interpretation of spectra and to detect areas of maximum differences in composition of two agro–food products (sunflower seed and corn) and their corresponding by-products (sunflower meal and corn gluten feed). The results obtained show that the SNV+DT and the DT+SNV transformations of the raw data make the existing chemical differences between scattering agro–food products more easily interpretable.

Identification Performance of Different Types of Handheld Near-Infrared (NIR) Spectrometers for the Recycling of Polymer Commodities

2018 ◽  
Vol 72 (9) ◽  
pp. 1362-1370 ◽  
Author(s):  
Hui Yan ◽  
Heinz W. Siesler
Keyword(s):  
Near Infrared ◽  
Raw Materials ◽  
Discrimination Performance ◽  
Principal Component ◽  
Identification Performance ◽  
Score Plot ◽  
Discrimination Capability ◽  
Standard Normal Variate ◽  
Correct Assignment ◽  
Standard Normal

For sustainable utilization of raw materials and environmental protection, the recycling of the most common polymers—polyethylene (PE), polypropylene (PP), polyethylene terephthalate (PET), polyvinyl chloride (PVC), and polystyrene (PS)—is an extremely important issue. In the present communication, the discrimination performance of the above polymer commodities based on their near-infrared (NIR) spectra measured with four real handheld (<200 g) spectrometers based on different monochromator principles were investigated. From a total of 43 polymer samples, the diffuse reflection spectra were measured with the handheld instruments. After the original spectra were pretreated by second derivative and standard normal variate (SNV), principal component analysis (PCA) was applied and unknown samples were tested by soft independent modeling of class analogies (SIMCA). The results show that the five polymer commodities cluster in the score plots of their first three principal components (PCs) and, furthermore, samples in calibration and test sets can be correctly identified by SICMA. Thus, it was concluded that on the basis of the NIR spectra measured with the handheld spectrometers the SIMCA analysis provides a suitable analytical tool for the correct assignment of the type of polymer. Because the mean distance between clusters in the score plot reflects the discrimination capability for each polymer pair the variation of this parameter for the spectra measured with the different handheld spectrometers was used to rank the identification performance of the five polymer commodities.

scholarly journals Evaluation of Visible-Near Infrared Reflectance Spectra of Avocado Leaves as a Non-destructive Sensing Tool for Detection of Laurel Wilt

Plant Disease ◽  
2012 ◽  
Vol 96 (11) ◽  
pp. 1683-1689 ◽  
Author(s):  
Sindhuja Sankaran ◽  
Reza Ehsani ◽  
Sharon A. Inch ◽  
Randy C. Ploetz
Keyword(s):  
Discriminant Analysis ◽  
Vegetation Index ◽  
Near Infrared ◽  
Principal Component ◽  
Persea Americana ◽  
Near Infrared Reflectance ◽  
Laurel Wilt ◽  
Linear Discriminant ◽  
Raffaelea Lauricola ◽  
Non Destructive

Laurel wilt, caused by the fungus Raffaelea lauricola, affects the growth, development, and productivity of avocado, Persea americana. This study evaluated the potential of visible-near infrared spectroscopy for non-destructive sensing of this disease. The symptoms of laurel wilt are visually similar to those caused by freeze damage (leaf necrosis). In this work, we performed classification studies with visible-near infrared spectra of asymptomatic and symptomatic leaves from infected plants, as well as leaves from freeze-damaged and healthy plants, both of which were non-infected. The principal component scores computed from principal component analysis were used as input features in four classifiers: linear discriminant analysis, quadratic discriminant analysis (QDA), Naïve-Bayes classifier, and bagged decision trees (BDT). Among the classifiers, QDA and BDT resulted in classification accuracies of higher than 94% when classifying asymptomatic leaves from infected plants. All of the classifiers were able to discriminate symptomatic-infected leaves from freeze-damaged leaves. However, the false negatives mainly resulted from asymptomatic-infected leaves being classified as healthy. Analyses of average vegetation indices of freeze-damaged, healthy (non-infected), asymptomatic-infected, and symptomatic-infected leaves indicated that the normalized difference vegetation index and the simple ratio index were statistically different.

Application of Visible-Near Infrared Spectra Technique Based on to the Non-Destructive Measurement of the Salmon Quality

2014 ◽  
Vol 926-930 ◽  
pp. 961-964
Author(s):  
Jiao Jiao Yin
Keyword(s):  
Infrared Spectra ◽  
Near Infrared ◽  
Principal Component ◽  
Support Vector ◽  
Analysis Method ◽  
Linear Discriminant ◽  
Near Infrared Spectra ◽  
Destructive Measurement ◽  
Non Destructive

Because the reflectivity of astaxanthin vary in different bands (mainly 400nm-600nm), so we use the visible-near infrared spectra technique to irradiate the salmon. Because in daily life, people grade the salmon flesh with a color card. In this paper, we first use principal component analysis to reduce the dimensionality of the spectral data of salmon, then use linear discriminant analysis method, least squares support vector machine classification method to distinguish the flesh quality. The correct classification rates are 60%and73.3%. The results show that we can use visible – near infrared spectra to distinguish the quality of the salmon which doesn’t be dissected.

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