scholarly journals Application of calibrations to hyperspectral images of food grains: example for wheat falling number

2017 ◽  
Author(s):  
Nicola Caporaso ◽  
Martin Whitworth ◽  
Ian Fisk
Keyword(s):  
Near Infrared ◽  
Nir Spectroscopy ◽  
Classification Model ◽  
Least Squares Regression ◽  
Falling Number ◽  
Linear Discriminant ◽  
Standard Normal Variate ◽  
Average Spectrum ◽  
Standard Normal ◽  
Improved Performance

The presence of a few kernels with sprouting problems in a batch of wheat can result in enzymatic activity sufficient to compromise flour functionality and bread quality. This is commonly assessed using the Hagberg Falling Number (HFN) method, which is a batch analysis. Hyperspectral imaging (HSI) can provide analysis at the single grain level with potential for improved performance. The present paper deals with the development and application of calibrations obtained using an HSI system working in the near infrared (NIR) region (~900–2500 nm) and reference measurements of HFN. A partial least squares regression calibration has been built using 425 wheat samples with a HFN range of 62–318 s, including field and laboratory pre-germinated samples placed under wet conditions. Two different approaches were tested to apply calibrations: i) application of the calibration to each pixel, followed by calculation of the average of the resulting values for each object (kernel); ii) calculation of the average spectrum for each object, followed by application of the calibration to the mean spectrum. The calibration performance achieved for HFN (R2 = 0.6; RMSEC ~ 50 sRMSEP ~ 63 s) compares favourably with other studies using NIR spectroscopy. Linear spectral pre-treatments lead to similar results when applying the two methods, while non-linear treatments such as standard normal variate showed obvious differences between these approaches. A classification model based on linear discriminant analysis (LDA) was also applied to segregate wheat kernels into low (<250 s) and high (>250 s) HFN groups. LDA correctly classified 86.4% of the samples, with a classification accuracy of 97.9% when using an HFN threshold of 150 s. These results are promising in terms of wheat quality assessment using a rapid and non-destructive technique which is able to analyse wheat properties on a single-kernel basis, and to classify samples as acceptable or unacceptable for flour production.

scholarly journals Tracing the Geographical Origin of Durum Wheat by FT-NIR Spectroscopy

Foods ◽  
2019 ◽  
Vol 8 (10) ◽  
pp. 450 ◽  
Author(s):  
Annalisa De Girolamo ◽  
Marina Cortese ◽  
Salvatore Cervellieri ◽  
Vincenzo Lippolis ◽  
Michelangelo Pascale ◽  
...  
Keyword(s):  
Durum Wheat ◽  
Near Infrared ◽  
Southern Italy ◽  
Geographical Origin ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Classification Model ◽  
North Central ◽  
Linear Discriminant ◽  
The World

Fourier transform near infrared (FT-NIR) spectroscopy, in combination with principal component-linear discriminant analysis (PC-LDA), was used for tracing the geographical origin of durum wheat samples. The classification model PC-LDA was applied to discriminate durum wheat samples originating from Northern, Central, and Southern Italy (n = 181), and to differentiate Italian durum wheat samples from those cultivated in other countries across the world (n = 134). Developed models were validated on a separated set of wheat samples. Different pre-treatments of spectral data and different spectral regions were selected and compared in terms of overall discrimination (OD) rates obtained in validation. The LDA models were able to correctly discriminate durum Italian wheat samples according to their geographical origin (i.e., North, Central, and South) with OD rates of up of 96.7%. Better results were obtained when LDA models were applied to the discrimination of Italian durum wheat samples from those originating from other countries across the world, having OD rates of up to 100%. The excellent results obtained herein clearly indicate the potential of FT-NIR spectroscopy to be used for the discrimination of durum wheat samples according to their geographical origin.

scholarly journals Rapid Discrimination of the Geographical Origins of an Oolong Tea (Anxi-Tieguanyin) by Near-Infrared Spectroscopy and Partial Least Squares Discriminant Analysis

2014 ◽  
Vol 2014 ◽  
pp. 1-6 ◽  
Author(s):  
Si-Min Yan ◽  
Jun-Ping Liu ◽  
Lu Xu ◽  
Xian-Shu Fu ◽  
Hai-Feng Cui ◽  
...  
Keyword(s):  
Discriminant Analysis ◽  
Least Squares ◽  
Partial Least Squares ◽  
Sensitivity And Specificity ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Classification Model ◽  
Standard Normal Variate ◽  
Statistical Model Selection ◽  
Rapid Discrimination

This paper focuses on a rapid and nondestructive way to discriminate the geographical origin of Anxi-Tieguanyin tea by near-infrared (NIR) spectroscopy and chemometrics. 450 representative samples were collected from Anxi County, the original producing area of Tieguanyin tea, and another 120 Tieguanyin samples with similar appearance were collected from unprotected producing areas in China. All these samples were measured by NIR. The Stahel-Donoho estimates (SDE) outlyingness diagnosis was used to remove the outliers. Partial least squares discriminant analysis (PLSDA) was performed to develop a classification model and predict the authenticity of unknown objects. To improve the sensitivity and specificity of classification, the raw data was preprocessed to reduce unwanted spectral variations by standard normal variate (SNV) transformation, taking second-order derivatives (D2) spectra, and smoothing. As the best model, the sensitivity and specificity reached 0.931 and 1.000 with SNV spectra. Combination of NIR spectrometry and statistical model selection can provide an effective and rapid method to discriminate the geographical producing area of Anxi-Tieguanyin.

Identification of geographical origin of TPFD based on handheld NIR spectroscopy and PLSDA

NIR news ◽  
2020 ◽  
Vol 31 (5-6) ◽  
pp. 25-29
Author(s):  
Rita-Cindy Aye-Ayire Sedjoah ◽  
Bangxing Han ◽  
Hui Yan
Keyword(s):  
Quality Control ◽  
Near Infrared ◽  
Geographical Origin ◽  
Nir Spectroscopy ◽  
Analysis Model ◽  
First Order ◽  
Standard Normal Variate ◽  
Standard Normal ◽  
Infrared Spectrometer ◽  
Near Infrared Spectrometer

The present study is focused on the identification of geographical origin (Zhejiang, Yunnan and Anhui, China) of Dendrobium officinale’s dried stem called Tiepi fengdou by mean of the handheld near-infrared spectrometer. Raw data were preprocessed to reduce unwanted spectral variations by the first-order derivative followed by standard normal variate transformation, and partial least squares discriminant analysis model was developed for calibration. The results showed that more than 90% of the origins were identified. Therefore, it is possible to classify the geographical origin of Tiepi fengdou by the use of the handheld near-infrared spectrometer for effective quality control.

scholarly journals Automatic and Rapid Discrimination of Cotton Genotypes by Near Infrared Spectroscopy and Chemometrics

2012 ◽  
Vol 2012 ◽  
pp. 1-7 ◽  
Author(s):  
Hai-Feng Cui ◽  
Zi-Hong Ye ◽  
Lu Xu ◽  
Xian-Shu Fu ◽  
Cui-Wen Fan ◽  
...  
Keyword(s):  
Discriminant Analysis ◽  
Classification Accuracy ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Standard Normal Variate ◽  
Pattern Recognition Methods ◽  
Standard Normal ◽  
Cotton Genotypes ◽  
Rapid Discrimination

This paper reports the application of near infrared (NIR) spectroscopy and pattern recognition methods to rapid and automatic discrimination of the genotypes (parent, transgenic, and parent-transgenic hybrid) of cotton plants. Diffuse reflectance NIR spectra of representative cotton seeds (n=120) and leaves (n=123) were measured in the range of 4000–12000 cm−1. A practical problem when developing classification models is the degradation and even breakdown of models caused by outliers. Considering the high-dimensional nature and uncertainty of potential spectral outliers, robust principal component analysis (rPCA) was applied to each separate sample group to detect and exclude outliers. The influence of different data preprocessing methods on model prediction performance was also investigated. The results demonstrate that rPCA can effectively detect outliers and maintain the efficiency of discriminant analysis. Moreover, the classification accuracy can be significantly improved by second-order derivative and standard normal variate (SNV). The best partial least squares discriminant analysis (PLSDA) models obtained total classification accuracy of 100% and 97.6% for seeds and leaves, respectively.

scholarly journals Near infrared hyperspectral images and pattern recognition techniques used to identify etiological agents of cotton anthracnose and ramulosis

2018 ◽  
Author(s):  
Priscila Aires ◽  
Francisco Gambarra-Neto ◽  
Wirton Coutinho ◽  
Alderi Araujo ◽  
Gilvan da Silva ◽  
...  
Keyword(s):  
Pattern Recognition ◽  
Near Infrared ◽  
Intergenic Spacer ◽  
Linear Discriminant ◽  
Intergenic Spacer Region ◽  
Standard Normal Variate ◽  
Standard Normal ◽  
Etiological Agents ◽  
Speed Accuracy ◽  
Non Destructive

Hyperspectral imaging near infrared (HSI-NIR) has the potential to be used as a non-destructive approach for the analysis of new microbiological matrices of agriculture interest. This article describes a new method for accurately and rapidly classifying the etiological agents Colletotrichum gossypii (CG) and C. gossypii var. cephalosporioides (CGC) grown in a culture medium, using scattering reflectance HSI-NIR and multivariate pattern recognition analysis. Five strains of CG and 46 strains of CGC were used. CG and CGC strains were grown on Czapek-agar medium at 25 °C under a 12-hour photoperiod for 15 days. Molecular identification was performed as a reference for the CG and CGC classes by polymerase chain reaction of the intergenic spacer region of rDNA. The scattering coefficient µs and the absorption coefficient µa were obtained, which resulted in a µs value for CG of 1.37 × 1019 and for CGC of 5.83 × 10–11. These results showed that the use of the standard normal variate was no longer essential and reduced the spectral range from 1000–2500 nm to 1000–1381 nm. The results evidenced two type II errors for the CG 457-2 and CGC 39 samples in the soft independent modelling model of the analogy model. There were no classification errors using the algorithm of the successive projections for variable selection in linear discriminant analysis (SPA-LDA). A parallel validation of the results obtained with SPA-LDA was performed using a box plot analysis with the 11 variables selected by SPA, in which there were no outliers for the HSI-NIR models. The new HSI-NIR and SPA-LDA procedures for the classification of CG and CGC etiological agents are noted for their greater analytical speed, accuracy, simplicity, lower cost and non-destructive nature.

scholarly journals The Feasibility of Using Near-Infrared Spectroscopy and Chemometrics for Untargeted Detection of Protein Adulteration in Yogurt: Removing Unwanted Variations in Pure Yogurt

2013 ◽  
Vol 2013 ◽  
pp. 1-9 ◽  
Author(s):  
Lu Xu ◽  
Si-Min Yan ◽  
Chen-Bo Cai ◽  
Zhen-Ji Wang ◽  
Xiao-Ping Yu
Keyword(s):  
Soy Protein ◽  
Near Infrared ◽  
Pure Water ◽  
Nir Spectroscopy ◽  
Local Market ◽  
Fresh Milk ◽  
Standard Normal Variate ◽  
Standard Normal ◽  
Modelling Techniques ◽  
Different Levels

Untargeted detection of protein adulteration in Chinese yogurt was performed using near-infrared (NIR) spectroscopy and chemometrics class modelling techniques. sixty yogurt samples were prepared with pure and fresh milk from local market, and 197 adulterated yogurt samples were prepared by blending the pure yogurt objects with different levels of edible gelatin, industrial gelatin, and soy protein powder, which have been frequently used for yogurt adulteration. A recently proposed one-class partial least squares (OCPLS) model was used to model the NIR spectra of pure yogurt objects and analyze those of future objects. To improve the raw spectra, orthogonal projection (OP) of raw spectra onto the spectrum of pure water and standard normal variate (SNV) transformation were used to remove unwanted spectral variations. The best model was obtained with OP preprocessing with sensitivity of 0.900 and specificity of 0.949. Moreover, adulterations of yogurt with 1% (w/w) edible gelatin, 2% (w/w) industrial gelatin, and 2% (w/w) soy protein powder can be safely detected by the proposed method. This study demonstrates the potential of combining NIR spectroscopy and OCPLS as an untargeted detection tool for protein adulteration in yogurt.

scholarly journals Model Prediksi Kadar Air Buah Cabai Rawit Domba (Capsicum frutescens L.) Menggunakan Spektroskopi Ultraviolet Visible Near Infrared

2021 ◽  
Vol 4 (1) ◽  
pp. 15-22
Author(s):  
Kusumiyati Kusumiyati ◽  
Ine Elisa Putri ◽  
Agus Arip Munawar
Keyword(s):  
Partial Least Squares Regression ◽  
Near Infrared ◽  
Scatter Correction ◽  
Capsicum Frutescens ◽  
Least Squares Regression ◽  
Orthogonal Signal ◽  
Standard Normal Variate ◽  
Orthogonal Signal Correction ◽  
Signal Correction ◽  
Standard Normal

Penelitian ini bertujuan untuk menduga kadar air buah cabai rawit domba (Capsicum frutescens L.) menggunakan spektroskopi UV-Vis-NIR. Total sampel yang digunakan yaitu 45 buah. Analisis dilakukan di Laboratorium Hortikultura, Fakultas Pertanian, Universitas Padjadjaran. Akuisisi data spektra dengan rentang panjang gelombang 300 – 1050 nm (Nirvana AG410). Spektra diperbaiki dengan metode multiplicative scatter correction (MSC), standard normal variate transformation (SNV), orthogonal signal correction (OSC), first derivative (dg1) dan second derivative (dg2). Analisis data dilakukan dengan menggunakan partial least squares regression (PLSR). Berdasarkan penelitian ini menunjukkan bahwa metode koreksi OSC menghasilkan model kalibrasi tertinggi dengan Rkal, RMSEC, Rval, RMSECV, RPD dan faktornya masing-masing yaitu 0.99, 0.31, 0.98, 0.68, 6.62 dan 4. Hal ini menunjukkan bahwa spektroskopi UV-Vis-NIR dapat digunakan untuk memprediksi kadar air pada buah cabai rawit domba.

scholarly journals Robust and Automated Internal Quality Grading of a Chinese Green Tea (Longjing) by Near-Infrared Spectroscopy and Chemometrics

2013 ◽  
Vol 2013 ◽  
pp. 1-7 ◽  
Author(s):  
Xian-Shu Fu ◽  
Lu Xu ◽  
Xiao-Ping Yu ◽  
Zi-Hong Ye ◽  
Hai-Feng Cui
Keyword(s):  
Quality Control ◽  
Green Tea ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Internal Quality Control ◽  
Internal Quality ◽  
Outlier Analysis ◽  
Standard Normal Variate ◽  
Standard Normal ◽  
Quality Grading

Near-infrared (NIR) spectroscopy and chemometric methods were applied to internal quality control of a Chinese green tea, Longjing, with Protected Geographical Indication (PGI). A total of 2745 authentic Longjing tea samples of three different grades were analyzed by NIR spectroscopy. To remove the influence of abnormal samples, The Stahel-Donoho estimate (SDE) of outlyingness was used for outlier analysis. Partial least squares discriminant analysis (PLSDA) was then used to classify the grades of tea based on NIR spectra. Different data preprocessing methods, including smoothing, taking second-order derivative (D2) spectra, and standard normal variate (SNV) transformation, were performed to reduce unwanted spectral variations in samples of the same grade before classification models were developed. The results demonstrate that smoothing, taking D2 spectra, and SNV can improve the performance of PLSDA models. With SNV spectra, the model sensitivity was 1.000, 0.955, and 0.924, and the model specificity was 0.979, 0.952, and 0.996 for samples of three grades, respectively. FT-NIR spectrometry and chemometrics can provide a robust and effective tool for rapid internal quality control of Longjing green tea.

A Chemometrics Approach for Distinguishing between Beers Using near Infrared Spectroscopy

2009 ◽  
Vol 17 (2) ◽  
pp. 69-76 ◽  
Author(s):  
Hua Li ◽  
Yutaka Takahashi ◽  
Masanori Kumagai ◽  
Kazuhiko Fujiwara ◽  
Ryoei Kikuchi ◽  
...  
Keyword(s):  
Quality Evaluation ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Total Polyphenol ◽  
Standard Normal Variate ◽  
Production Processes ◽  
Standard Normal ◽  
Akita Prefecture ◽  
Beer Production

Thirty-eight beers from different producing areas and/or makers were distinguished by principal component analysis (PCA) of the near infrared (NIR) spectra acquired by a portable NIR spectrometer. Classsification of Akita beers: beers locally produced in Akita prefecture, Japan, from other famous brand beers could be successfully performed, especially when the PCA was calculated on the standard normal variate (SNV) spectra. The classification equations use information related to water and CH2 absorption that reflected the differences in chemical com position of beers due to different production processes. In addition, the compositions of total polyphenol and total nitrogen were estimated from NIR spectra by multiple linear regression (MLR). This study showed that NIR spectroscopy is promising for beer quality evaluation, both for identifying multifarious beers including Akita beers using PCA and for rapid in-line quality control and inspection for beer production using the quantitative MLR analysis.

Applicability of Vis-NIR hyperspectral imaging for monitoring wood moisture content (MC)

Holzforschung ◽  
2013 ◽  
Vol 67 (3) ◽  
pp. 307-314 ◽  
Author(s):  
Hikaru Kobori ◽  
Nathalie Gorretta ◽  
Gilles Rabatel ◽  
Véronique Bellon-Maurel ◽  
Gilles Chaix ◽  
...  
Keyword(s):  
Moisture Content ◽  
Hyperspectral Imaging ◽  
Water Distribution ◽  
Near Infrared ◽  
Least Squares Regression ◽  
Wood Moisture ◽  
Standard Normal Variate ◽  
Average Reflectance ◽  
Standard Normal ◽  
High Prediction

Abstract Visible-near-infrared hyperspectral imaging was tested for its suitability for monitoring the moisture content (MC) of wood samples during natural drying. Partial least-squares regression (PLSR) prediction of MC was performed on the basis of average reflectance spectra obtained from hyperspectral images. The validation showed high prediction accuracy. The results were compared concerning the PLSR prediction of MC mapping from raw spectra and standard normal variate (SNV) treatment. SNV pretreatment leads to the best results for visualizing the MC distribution in wood. Hyperspectral imaging has a high potential for monitoring the water distribution of wood.

Sign in / Sign up

Export Citation Format

Share Document