Soil Enzymes: Spatial Distribution and Function in Agroecosystems

1994 ◽  
Vol 41 (8) ◽  
pp. 1663-1671 ◽  
Author(s):  
W.A. Cerbito ◽  
F.V. Quero ◽  
C.R. Balagapo ◽  
K. Miyazawa ◽  
K. Sato

2021 ◽  
Author(s):  
Amine Driouchi ◽  
Scott Gray-Owen ◽  
Christopher M Yip

Mapping the self-organization and spatial distribution of membrane proteins is key to understanding their function. We report here on a correlated STORM/homoFRET imaging approach for resolving the nanoscale distribution and oligomeric state of membrane proteins. Live cell homoFRET imaging of CEACAM1, a cell-surface receptor known to exist in a complex equilibrium between monomer and dimer/oligomer states, revealed highly heterogenous diffraction-limited structures on the surface of HeLa cells. Correlated super-resolved STORM imaging revealed that these structures comprised a complex mixture and spatial distribution of self-associated CEACAM1 molecules. This correlated approach provides a compelling strategy for addressing challenging questions about the interplay between membrane protein concentration, distribution, interaction, clustering, and function.


Pedobiologia ◽  
2011 ◽  
Vol 54 (5-6) ◽  
pp. 341-351 ◽  
Author(s):  
Doreen Berner ◽  
Sven Marhan ◽  
Daniel Keil ◽  
Christian Poll ◽  
André Schützenmeister ◽  
...  

2017 ◽  
Vol 28 ◽  
pp. v337
Author(s):  
Y. Wang ◽  
L. Ryner ◽  
A.R. Udyavar ◽  
M. Desbois ◽  
C. Kozlowski ◽  
...  

2015 ◽  
Author(s):  
Romain D. Cazé ◽  
Amanda J. Foust ◽  
Claudia Clopath ◽  
Simon R. Schultz

AbstractLocal non-linearities in dendrites render neuronal output dependent on the spatial distribution of synapses. A neuron will activate differently depending on whether active synapses are spatially clustered or dispersed. While this sensitivity can in principle expand neuronal computational capacity, it has thus far been employed in very few learning paradigms. To make use of this sensitivity, groups of correlated neurons need to make contact with distinct dendrites, and this requires a mechanism to ensure the correct distribution of synapses contacting from distinct ensembles. To address this problem, we introduce the requirement that on a short time scale, a pre-synaptic neuron makes a constant number of synapses with the same strength on a post-synaptic neuron. We find that this property enables clusters to distribute correctly and guarantees their functionality. Furthermore, we demonstrate that a change in the input statistics can reshape the spatial distribution of synapses. Finally, we show under which conditions clusters do not distribute correctly, e.g. when cross-talk between dendrites is too strong. As well as providing insight into potential biological mechanisms of learning, this work paves the way for new learning algorithms for artificial neural networks that exploit the spatial distribution of synapses.


1986 ◽  
Vol 19 (1) ◽  
pp. 86
Author(s):  
R. Bakhuizen ◽  
P.C. van Spronsen ◽  
L. Goosen-de Roo ◽  
J.W. Kijne

2017 ◽  
Vol 28 ◽  
pp. v349
Author(s):  
Y. Wang ◽  
L. Ryner ◽  
A.R. Udyavar ◽  
M. Desbois ◽  
C. Kozlowski ◽  
...  

2019 ◽  
Author(s):  
Sean C. Booth ◽  
Scott A. Rice

AbstractInterspecies interactions in bacterial biofilms have important impacts on the composition and function of communities in natural and engineered systems. To investigate these interactions, synthetic communities provide experimentally tractable systems. Agar-surface colonies are similar to biofilms and have been used for investigating the eco-evolutionary and biophysical forces that determine community composition and spatial distribution of bacteria. Prior work has focused on intraspecies interactions, using differently fluorescent tagged but identical or genetically modified strains of the same species. Here, we investigated how physiological differences determine the community composition and spatial distribution in synthetic communities of Pseudomonas aeruginosa, Pseudomonas protegens and Klebsiella pneumoniae. Using quantitative microscopic imaging, we found that interspecies interactions in multispecies colonies are influenced by type IV pilus mediated motility, extracellular matrix secretion, environmental parameters and the specific species involved. These results indicate that the patterns observable in mixed species colonies can be used to understand the mechanisms that drive interspecies interactions, which are dependent on the interplay between specific species’ physiology and environmental conditions.


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