scholarly journals On the distribution and function of synaptic clusters in dendrites

2015 ◽  
Author(s):  
Romain D. Cazé ◽  
Amanda J. Foust ◽  
Claudia Clopath ◽  
Simon R. Schultz
Keyword(s):  
Spatial Distribution ◽  
Short Time Scale ◽  
Constant Number ◽  
Biological Mechanisms ◽  
New Learning ◽  
And Function ◽  
Short Time ◽  
Neuronal Output ◽  
Post Synaptic Neuron ◽  
Insight Into

AbstractLocal non-linearities in dendrites render neuronal output dependent on the spatial distribution of synapses. A neuron will activate differently depending on whether active synapses are spatially clustered or dispersed. While this sensitivity can in principle expand neuronal computational capacity, it has thus far been employed in very few learning paradigms. To make use of this sensitivity, groups of correlated neurons need to make contact with distinct dendrites, and this requires a mechanism to ensure the correct distribution of synapses contacting from distinct ensembles. To address this problem, we introduce the requirement that on a short time scale, a pre-synaptic neuron makes a constant number of synapses with the same strength on a post-synaptic neuron. We find that this property enables clusters to distribute correctly and guarantees their functionality. Furthermore, we demonstrate that a change in the input statistics can reshape the spatial distribution of synapses. Finally, we show under which conditions clusters do not distribute correctly, e.g. when cross-talk between dendrites is too strong. As well as providing insight into potential biological mechanisms of learning, this work paves the way for new learning algorithms for artificial neural networks that exploit the spatial distribution of synapses.

Role of microtubules in estradiol-17β-d-glucuronide-induced alteration of canalicular Mrp2 localization and activity

2005 ◽  
Vol 288 (2) ◽  
pp. G327-G336 ◽  
Author(s):  
Aldo D. Mottino ◽  
Fernando A. Crocenzi ◽  
Enrique J. Sánchez Pozzi ◽  
Luis M. Veggi ◽  
Marcelo G. Roma ◽  
...  
Keyword(s):  
Biliary Excretion ◽  
Bile Flow ◽  
Short Time Scale ◽  
Microtubule Inhibitor ◽  
Canalicular Membrane ◽  
Confocal Immunofluorescence Microscopy ◽  
Confocal Immunofluorescence ◽  
And Function ◽  
Short Time ◽  
Estradiol 17Β

Estradiol-17β-d-glucuronide (E2-17G) induces a marked but reversible inhibition of bile flow in the rat together with endocytic retrieval of multidrug resistance-associated protein 2 (Mrp2) from the canalicular membrane to intracellular structures. We analyzed the effect of pretreatment (100 min) with the microtubule inhibitor colchicine or lumicholchicine, its inactive isomer (1 μmol/kg iv), on changes in bile flow and localization and function of Mrp2 induced by E2-17G (15 μmol/kg iv). Bile flow and biliary excretion of bilirubin, an endogenous Mrp2 substrate, were measured throughout, whereas Mrp2 localization was examined at 20 and 120 min after E2-17G by confocal immunofluorescence microscopy and Western analysis. Colchicine pretreatment alone did not affect bile flow or Mrp2 localization and activity over the short time scale examined (3–4 h). Administration of E2-17G to colchicine-pretreated rats induced a marked decrease (85%) in bile flow and biliary excretion of bilirubin as well as internalization of Mrp2 at 20 min. These alterations were of a similar magnitude as in rats pretreated with lumicolchicine followed by E2-17G. Bile flow and Mrp2 localization and activity were restored to control levels within 120 min of E2-17G in animals pretreated with lumicolchicine. In contrast, in colchicine-pretreated rats followed by E2-17G, bile flow and Mrp2 activity remained significantly inhibited by 60%, and confocal and Western studies revealed sustained internalization of Mrp2 120 min after E2-17G. We conclude that recovery from E2-17G cholestasis, associated with exocytic insertion of Mrp2 in the canalicular membrane, but not its initial E2-17G-induced endocytosis, is a microtubule-dependent process.

Periodic Variations in the Coronal Green Line Intensity and their Connection with the White-light Coronal Structures

2000 ◽  
Vol 179 ◽  
pp. 197-200
Author(s):  
Milan Minarovjech ◽  
Milan Rybanský ◽  
Vojtech Rušin
Keyword(s):  
Time Resolution ◽  
White Light ◽  
Short Time Scale ◽  
High Time Resolution ◽  
Green Line ◽  
Periodic Intensity ◽  
Coronal Green Line ◽  
Significant Intensity ◽  
Short Time ◽  
Coronal Structures

AbstractWe present an analysis of short time-scale intensity variations in the coronal green line as obtained with high time resolution observations. The observed data can be divided into two groups. The first one shows periodic intensity variations with a period of 5 min. the second one does not show any significant intensity variations. We studied the relation between regions of coronal intensity oscillations and the shape of white-light coronal structures. We found that the coronal green-line oscillations occur mainly in regions where open white-light coronal structures are located.

Structure and function of neural networks in the retina

1988 ◽  
Vol 46 ◽  
pp. 26-27
Author(s):  
Peter Sterling
Keyword(s):  
Ganglion Cells ◽  
Three Dimensional ◽  
Structure And Function ◽  
Synaptic Connections ◽  
Visual Axis ◽  
One Dimensional ◽  
Cat Retina ◽  
Ultrathin Sections ◽  
And Function ◽  
Insight Into

The synaptic connections in cat retina that link photoreceptors to ganglion cells have been analyzed quantitatively. Our approach has been to prepare serial, ultrathin sections and photograph en montage at low magnification (˜2000X) in the electron microscope. Six series, 100-300 sections long, have been prepared over the last decade. They derive from different cats but always from the same region of retina, about one degree from the center of the visual axis. The material has been analyzed by reconstructing adjacent neurons in each array and then identifying systematically the synaptic connections between arrays. Most reconstructions were done manually by tracing the outlines of processes in successive sections onto acetate sheets aligned on a cartoonist's jig. The tracings were then digitized, stacked by computer, and printed with the hidden lines removed. The results have provided rather than the usual one-dimensional account of pathways, a three-dimensional account of circuits. From this has emerged insight into the functional architecture.

Computational Approaches to Predict the Non-canonical DNAs

2019 ◽  
Vol 14 (6) ◽  
pp. 470-479 ◽  
Author(s):  
Nazia Parveen ◽  
Amen Shamim ◽  
Seunghee Cho ◽  
Kyeong Kyu Kim
Keyword(s):  
Computational Methods ◽  
Genetic Instability ◽  
Computational Prediction ◽  
Structure And Function ◽  
Sequence Motifs ◽  
Computational Approaches ◽  
Functional Roles ◽  
And Function ◽  
Genetic Events ◽  
Insight Into

Background: Although most nucleotides in the genome form canonical double-stranded B-DNA, many repeated sequences transiently present as non-canonical conformations (non-B DNA) such as triplexes, quadruplexes, Z-DNA, cruciforms, and slipped/hairpins. Those noncanonical DNAs (ncDNAs) are not only associated with many genetic events such as replication, transcription, and recombination, but are also related to the genetic instability that results in the predisposition to disease. Due to the crucial roles of ncDNAs in cellular and genetic functions, various computational methods have been implemented to predict sequence motifs that generate ncDNA. Objective: Here, we review strategies for the identification of ncDNA motifs across the whole genome, which is necessary for further understanding and investigation of the structure and function of ncDNAs. Conclusion: There is a great demand for computational prediction of non-canonical DNAs that play key functional roles in gene expression and genome biology. In this study, we review the currently available computational methods for predicting the non-canonical DNAs in the genome. Current studies not only provide an insight into the computational methods for predicting the secondary structures of DNA but also increase our understanding of the roles of non-canonical DNA in the genome.

Nondiffusive Brownian Motion Studied by Diffusing-Wave Spectroscopy

1989 ◽  
Vol 177 ◽  
Author(s):  
D. J. Pine ◽  
D. A. Weitz ◽  
D. J. Durian ◽  
P. N. Pusey ◽  
R. J. A. Tough
Keyword(s):  
Autocorrelation Function ◽  
Colloidal Particles ◽  
Scattered Light ◽  
Short Time Scale ◽  
Velocity Autocorrelation Function ◽  
Velocity Autocorrelation ◽  
Power Law Decay ◽  
Brownian Particles ◽  
Short Time ◽  
Surrounding Fluid

ABSTRACTOn a short time scale, Brownian particles undergo a transition from initially ballistic trajectories to diffusive motion. Hydrodynamic interactions with the surrounding fluid lead to a complex time dependence of this transition. We directly probe this transition for colloidal particles by measuring the autocorrelation function of multiply scattered light and observe the effects of the slow power-law decay of the velocity autocorrelation function.

scholarly journals On the Short Time Scale Evolutionary History of the Contact Binary VW Cephei

1998 ◽  
Vol 11 (1) ◽  
pp. 396-396
Author(s):  
I. Pustylnik
Keyword(s):  
Evolutionary History ◽  
Light Curves ◽  
Published Data ◽  
Short Time Scale ◽  
Flare Activity ◽  
Considerable Portion ◽  
History Of ◽  
Contact Binary ◽  
Elongation Phase ◽  
Short Time

We study the short-time evolutionary history of the well-known contact binary VW Cep. Our analysis is based partly on the numerous UBV lightcurves obtained at Tartu Observatory, IUE spectra, and samples from the published data. Special attention is given to the effects of asymmetry of the light curves. A higher degree of asymmetry outside the eclipses along with the significant displacements of the brightness maxima in respect to the elongation phase is interpreted as evidence that a considerable portion of the flaring source is concentrated close to the neck connecting the components. We discuss the nature of asymmetry in terms of possible mass exchange and the flare activity and compare the results of our model computations with the record of orbital period variations over the last 60 years.

scholarly journals Significance of Mast Cell Formed Extracellular Traps in Microbial Defense

2021 ◽  
Author(s):  
Daniel Elieh Ali Komi ◽  
Wolfgang M. Kuebler
Keyword(s):  
State Of The Art ◽  
Extracellular Dna ◽  
Cellular Mechanisms ◽  
Extracellular Traps ◽  
Synthetic Chemicals ◽  
Dna Strands ◽  
Associated Proteins ◽  
Microbial Defense ◽  
And Function ◽  
Insight Into

AbstractMast cells (MCs) are critically involved in microbial defense by releasing antimicrobial peptides (such as cathelicidin LL-37 and defensins) and phagocytosis of microbes. In past years, it has become evident that in addition MCs may eliminate invading pathogens by ejection of web-like structures of DNA strands embedded with proteins known together as extracellular traps (ETs). Upon stimulation of resting MCs with various microorganisms, their products (including superantigens and toxins), or synthetic chemicals, MCs become activated and enter into a multistage process that includes disintegration of the nuclear membrane, release of chromatin into the cytoplasm, adhesion of cytoplasmic granules on the emerging DNA web, and ejection of the complex into the extracellular space. This so-called ETosis is often associated with cell death of the producing MC, and the type of stimulus potentially determines the ratio of surviving vs. killed MCs. Comparison of different microorganisms with specific elimination characteristics such as S pyogenes (eliminated by MCs only through extracellular mechanisms), S aureus (removed by phagocytosis), fungi, and parasites has revealed important aspects of MC extracellular trap (MCET) biology. Molecular studies identified that the formation of MCET depends on NADPH oxidase-generated reactive oxygen species (ROS). In this review, we summarize the present state-of-the-art on the biological relevance of MCETosis, and its underlying molecular and cellular mechanisms. We also provide an overview over the techniques used to study the structure and function of MCETs, including electron microscopy and fluorescence microscopy using specific monoclonal antibodies (mAbs) to detect MCET-associated proteins such as tryptase and histones, and cell-impermeant DNA dyes for labeling of extracellular DNA. Comparing the type and biofunction of further MCET decorating proteins with ETs produced by other immune cells may help provide a better insight into MCET biology in the pathogenesis of autoimmune and inflammatory disorders as well as microbial defense.

An Alternative Test Using Algal Cultures for Testing Chemicals for Toxicity

1993 ◽  
Vol 21 (2) ◽  
pp. 196-201
Author(s):  
Søren Achim Nielsen ◽  
Thomas Hougaard
Keyword(s):  
Size Distribution ◽  
Mitotic Activity ◽  
Time Scale ◽  
Test System ◽  
Short Time Scale ◽  
Toxic Substances ◽  
Alternative Test ◽  
Short Time ◽  
Algal Cultures ◽  
Test Cultures

An alternative test is presented, in which algal cultures are used for testing toxic substances. This test system is based on variations in the size distribution of cells in test cultures as a measurement of growth. Thus, inhibition of mitotic activity is used as a measurement for toxic effects. The test can be performed on a short time-scale and is very sensitive to even weak toxic doses.

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