Chicken genome sequence: a centennial gift to poultry genetics

2003 ◽  
Vol 102 (1-4) ◽  
pp. 291-296 ◽  
Author(s):  
J.B. Dodgson
Keyword(s):  
Genome Sequence ◽  
Chicken Genome ◽  
Chicken Genome Sequence

Genomics: The chicken genome sequence

Heredity ◽  
2005 ◽  
Vol 94 (6) ◽  
pp. 567-568 ◽  
Author(s):  
P Jensen
Keyword(s):  
Genome Sequence ◽  
Chicken Genome ◽  
Chicken Genome Sequence

scholarly journals Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping

BMC Genomics ◽  
2008 ◽  
Vol 9 (1) ◽  
pp. 129 ◽  
Author(s):  
Marine Douaud ◽  
Katia Fève ◽  
Marie Gerus ◽  
Valérie Fillon ◽  
Suzanne Bardes ◽  
...  
Keyword(s):  
Genetic Mapping ◽  
Genome Sequence ◽  
Radiation Hybrid ◽  
Chicken Genome ◽  
Sequence Assembly ◽  
Genome Sequence Assembly ◽  
Chicken Genome Sequence

scholarly journals Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index

2006 ◽  
Vol 25 (3) ◽  
pp. 514-524 ◽  
Author(s):  
Wilfrid Carre ◽  
Xiaofei Wang ◽  
Tom E. Porter ◽  
Yves Nys ◽  
Jianshan Tang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Dna Microarrays ◽  
Chicken Genome ◽  
Expressed Sequence Tag ◽  
Model Organism ◽  
Cdna Libraries ◽  
Cdna Clones ◽  
Chicken Gene ◽  
Chicken Genome Sequence ◽  
Gene Index

Its accessibility, unique evolutionary position, and recently assembled genome sequence have advanced the chicken to the forefront of comparative genomics and developmental biology research as a model organism. Several chicken expressed sequence tag (EST) projects have placed the chicken in 10th place for accrued ESTs among all organisms in GenBank. We have completed the single-pass 5′-end sequencing of 37,557 chicken cDNA clones from several single and multiple tissue cDNA libraries and have entered 35,407 EST sequences into GenBank. Our chicken EST sequences and those found in public databases (on July 1, 2004) provided a total of 517,727 public chicken ESTs and mRNAs. These sequences were used in the CAP3 assembly of a chicken gene index composed of 40,850 contigs and 79,192 unassembled singlets. The CAP3 contigs show a 96.7% match to the chicken genome sequence. The University of Delaware (UD) EST collection (43,928 clones) was assembled into 19,237 nonredundant sequences (13,495 contigs and 5,742 unassembled singlets). The UD collection contains 6,223 unique sequences that are not found in other public EST collections but show a 76% match to the chicken genome sequence. Our chicken contig and singlet sequences were annotated according to the highest BlastX and/or BlastN hits. The UD CAP3 contig assemblies and singlets are searchable by nucleotide sequence or key word ( http://cogburn.dbi.udel.edu ), and the cDNA clones are readily available for distribution from the chick EST website and clone repository ( http://www.chickest.udel.edu ). The present paper describes the construction and normalization of single and multiple tissue chicken cDNA libraries, high-throughput EST sequencing from these libraries, the CAP3 assembly of a chicken gene index from all public ESTs, and the identification of several nonredundant chicken gene sets for production of custom DNA microarrays.

Integration of microsatellite-based genetic maps for the turkey (Meleagris gallopavo)

Genome ◽  
2006 ◽  
Vol 49 (10) ◽  
pp. 1308-1318 ◽  
Author(s):  
K.M. Reed ◽  
L.D. Chaves ◽  
T.P. Knutson ◽  
S.B. Krueth ◽  
C.M. Ashwell ◽  
...  
Keyword(s):  
Chicken Genome ◽  
Meleagris Gallopavo ◽  
Genetic Maps ◽  
University Of Minnesota ◽  
Genetic Studies ◽  
Draft Assembly ◽  
Chicken Genome Sequence ◽  
Genetic Linkages ◽  
Breeding Farms ◽  
The University

Integration of turkey genetic maps and their associated markers is essential to increase marker density in support of map-based genetic studies. The objectives of this study were to integrate 2 microsatellite-based turkey genetic maps — the Roslin map and the University of Minnesota (UMN) map — by genotyping markers from the Roslin study on the mapping families of the UMN study. A total of 279 markers was tested, and 240 were subsequently screened for polymorphisms in the UMN/Nicholas Turkey Breeding Farms (NTBF) mapping families. Of the 240 markers, 89 were genetically informative and were used for genotyping the F2 offspring. Significant genetic linkages (log of odds > 3.0) were found for 84 markers from the Roslin study. BLASTn comparison of marker sequences with the draft assembly of the chicken genome found 263 significant matches. The combination of genetic and in silico mapping allowed for the alignment of all linkage groups of the Roslin map with those of the UMN map. With the addition of the markers from the Roslin map, 438 markers are now genetically linked in the UMN/NTBF families, and more than 1700 turkey sequences have now been assigned to likely positions in the chicken-genome sequence.

Koduojančios ir nekoduojančios genomo sekos variantų bei kopijų skaičiaus pokyčių molekulinis ir funkcinis vertinimas

2020 ◽  
Author(s):  
◽  
Evelina Siavrienė
Keyword(s):  
Genome Sequence ◽  
Copy Number ◽  
Copy Number Variants ◽  
Sequence Variants ◽  
Functional Evaluation

A Molecular and Functional Evaluation of Coding and Non-Coding Genome Sequence Variants and Copy Number Variants

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