scholarly journals Guanine Oxidation in Double-stranded DNA by MnTMPyP/KHSO5: At Least Three Independent Reaction Pathways

2001 ◽  
Vol 8 (1) ◽  
pp. 47-56 ◽  
Author(s):  
Andrea Lapi ◽  
Geneviève Pratviel ◽  
Bernard Meunier
Keyword(s):  
Degradation Products ◽  
Oxidation Products ◽  
Spiro Compound ◽  
Reaction Pathways ◽  
Guanine Oxidation ◽  
Double Stranded Dna ◽  
Independent Reaction ◽  
Reaction Routes ◽  
Damaged Dna

In order to better define the mechanism and the products of guanine oxidation within DNA, we investigated the details of the mechanism of guanine oxidation by a metalloporphyrin, Mn-TMPyP, associated to KHSO5 on oligonucleotides. We found that the three major products of guanine oxidation are formed by independent reaction routes. The oxidized guanidinohydantoin (1) and the proposed spiro compound 3 derivatives are not precursors of imidazolone lesion (Iz). These guanine lesions as well as their degradation products, may account for non-detected guanine oxidation products on oxidatively damaged DNA.

scholarly journals Analysis of Guanine Oxidation Products in Double-Stranded DNA and Proposed Guanine Oxidation Pathways in Single-Stranded, Double-Stranded or Quadruplex DNA

Biomolecules ◽  
2014 ◽  
Vol 4 (1) ◽  
pp. 140-159 ◽  
Author(s):  
Masayuki Morikawa ◽  
Katsuhito Kino ◽  
Takanori Oyoshi ◽  
Masayo Suzuki ◽  
Takanobu Kobayashi ◽  
...  
Keyword(s):  
Oxidation Products ◽  
Guanine Oxidation ◽  
Quadruplex Dna ◽  
Double Stranded Dna

scholarly journals Permanganate Oxidation of Microcystin-LA: Kinetics, Quantification, and Implications for Effective Drinking Water Treatment

2019 ◽  
Vol 2019 ◽  
pp. 1-13 ◽  
Author(s):  
David C. Szlag ◽  
Brian Spies ◽  
Regina G. Szlag ◽  
Judy A. Westrick
Keyword(s):  
Drinking Water ◽  
Protein Phosphatase ◽  
High Resolution Mass Spectrometry ◽  
Degradation Products ◽  
Drinking Water Treatment ◽  
Oxidation Products ◽  
Cyanobacterial Blooms ◽  
Reaction Pathways ◽  
Enzyme Linked Immunosorbent Assay ◽  
Treatment Efficiency

Permanganate pretreatment of drinking water is effective in transforming dissolved, noxious contaminants and in reducing halogenated by-products. Permanganate targets specific compounds such as taste and odor compounds, disinfection precursors, manganese, and natural organic contaminants that are not removed readily by conventional treatment alone. Cyanobacterial blooms (cHABs) can increase disinfection by-product precursors as well as the cyanotoxin, microcystin (MC), a potent liver toxin. MC toxicity is conferred by a unique, conserved amino acid, Adda, that inhibits protein phosphatase 1 and 2A. Although over 150 MC congeners have been reported, thousands of MCs are statistically possible. Over the last ten years, one congener, MC-LA, has been reported with increasing frequency, making it one of the most common cyanotoxins identified in North American freshwater systems; yet its oxidation has not been widely studied. Frequently, Adda specific enzyme-linked immunosorbent assay (ELISA) and protein phosphatase inhibition assay (PPIA) are used to quantitate total MCs to evaluate treatment efficiency and exposure. Anecdotal reports suggest that MC degradation products can cause interference with the Adda-ELISA. MC-LA was used as the model MC compound in this study. PPIA quantitation of MC-LA in water agreed with liquid chromatography high resolution mass spectrometry (LC/HRMS), whereas the ELISA quantitation did not agree with LC/HRMS quantitation. We determined the second order rate constant for MC-LA as 118 ± 9 M−1s−1, the activation energy to be 21.2 kJ mol−1, and the rate to be independent of pH between pH 6 and 9. Ten oxidation products (OPs) were observed by LC/HRMS and three primary reaction pathways are proposed. The reaction pathways were used to explain differences in the quantification by Adda-ELISA, HRMS, and PPIA. The oxohydroxylation of MC-LA produced two major OPs, C46H67N7O14[M+H]+= 942.4819 and C46H69N7O15[M+H]+=960.4925. Major OPs may contain an unmodified Adda and are the likely cause of interference with the Adda-ELISA. Several governmental agencies recommend the use of the Adda-ELISA to determine the MC quantitation for treatment efficiency and customer exposure; yet our results suggest that these or other OPs interfere with the Adda-ELISA causing artificially high values for total MCs.

scholarly journals Conversion of Methanol on Rutile TiO2 (110) and Tungsten Oxide Clusters: 1. Population of Defect-Dependent Thermal Reaction Pathways

2021 ◽  
Author(s):  
Lars Mohrhusen ◽  
Katharina Al-Shamery
Keyword(s):  
Tungsten Oxide ◽  
Single Crystals ◽  
Model System ◽  
Thermal Reaction ◽  
Reaction Pathways ◽  
Bifunctional Catalysts ◽  
Rutile Tio2 ◽  
Reaction Routes ◽  
And Tungsten

Tungsten oxide clusters deposited on rutile TiO2 (110) single crystals were used as a model system for heterogenous oxide-oxide bifunctional catalysts. The population of different thermal reaction routes in methanol...

Investigating the NO-dependent photooxidation of limonene by OH and O3 using the atmosphere simulation chamber SAPHIR

2021 ◽  
Author(s):  
Yat Sing Pang ◽  
Martin Kaminski ◽  
Anna Novelli ◽  
Philip Carlsson ◽  
Ismail-Hakki Acir ◽  
...  
Keyword(s):  
Organic Aerosol ◽  
Oxidation Products ◽  
Chemical Mechanism ◽  
Reaction Pathways ◽  
Oh Radicals ◽  
Oh Radical ◽  
Simulation Experiments ◽  
Master Chemical Mechanism ◽  
Simulation Results ◽  
Atmosphere Simulation Chamber

<p>Limonene is the fourth-most abundant monoterpene in the atmosphere, which upon oxidation leads to the formation of secondary organic aerosol (SOA) and thereby influences climate and air quality.</p><p>In this study, the oxidation of limonene by OH at different atmospherically relevant NO and HO<sub>2</sub> levels (NO: 0.1 – 10 ppb; HO<sub>2</sub>: 20 ppt) was investigated in simulation experiments in the SAPHIR chamber at Forschungszentrum Jülich. The analysis focuses on comparing measured radical concentrations (RO<sub>2</sub>, HO<sub>2</sub>, OH) and OH reactivity (k<sub>OH</sub>) with modeled values calculated using the Master Chemical Mechanism (MCM) version 3.3.1.</p><p>At high and medium NO concentrations, RO<sub>2</sub> is expected to quickly react with NO. An HO<sub>2</sub> radical is produced during the process that can be converted back to an OH radical by another reaction with NO. Consistently, for experiments conducted at medium NO levels (~0.5 ppb, RO<sub>2</sub> lifetime ~10 s), simulated RO<sub>2</sub>, HO<sub>2</sub>, and OH agree with observations within the measurement uncertainties, if the OH reactivity of oxidation products is correctly described.</p><p>At lower NO concentrations, the regeneration of HO<sub>2</sub> in the RO<sub>2</sub> + NO reaction is slow and the reaction of RO<sub>2</sub> with HO<sub>2</sub> gains importance in forming peroxides. However, simulation results show a large discrepancy between calculated radical concentrations and measurements at low NO levels (<0.1 ppb, RO<sub>2</sub> lifetime ~ 100 s). Simulated RO<sub>2</sub> concentrations are found to be overestimated by a factor of three; simulated HO<sub>2</sub> concentrations are underestimated by 50 %; simulated OH concentrations are underestimated by about 35%, even if k<sub>OH</sub> is correctly described. This suggests that there could be additional RO<sub>2</sub> reaction pathways that regenerate HO<sub>2</sub> and OH radicals become important, but they are not taken into account in the MCM model.</p>

scholarly journals Occurrence and distribution of ladderane oxidation products in different oceanic regimes

2012 ◽  
Vol 9 (7) ◽  
pp. 2407-2418 ◽  
Author(s):  
D. Rush ◽  
E. C. Hopmans ◽  
S. G. Wakeham ◽  
S. Schouten ◽  
J. S. Sinninghe Damsté
Keyword(s):  
Fatty Acids ◽  
Water Column ◽  
Arabian Sea ◽  
Degradation Products ◽  
Oxidation Products ◽  
Short Chain ◽  
Sediment Surface ◽  
Ammonium Oxidation ◽  
Anammox Activity ◽  
Sediment Matrix

Abstract. Ladderane fatty acids are commonly used as biomarkers for bacteria involved in anaerobic ammonium oxidation (anammox). These lipids have been experimentally shown to undergo aerobic microbial degradation to form short chain ladderane fatty acids. However, nothing is known of the production or the distribution of these oxic biodegradation products in the natural environment. In this study, we analysed marine water column particulate matter and sediment from three different oceanic regimes for the presence of ladderane oxidation products (C14 ladderane fatty acids) and of original ladderane fatty acids (C18 and C20 ladderane fatty acids). We found that ladderane oxidation products, i.e. C14 ladderane fatty acids, are already produced within the water column of the Arabian Sea oxygen minimum zone (OMZ) and thus only low amounts of oxygen (< 3 μM) are needed for the β-oxidation of original ladderane fatty acids to proceed. However, no short chain ladderane fatty acids were detected in the Cariaco Basin water column, where oxygen concentrations were below detection limit, suggesting that the β-oxidation pathway is inhibited by the absence of molecular oxygen, or that the microbes performing the degradation are not proliferating under these conditions. Comparison of distributions of ladderane fatty acids indicates that short chain ladderane fatty acids are mostly produced in the water column and at the sediment surface, before being preserved deeper in the sediments. Short chain ladderane fatty acids were abundant in Arabian Sea and Peru Margin sediments (ODP Leg 201), often in higher concentrations than the original ladderane fatty acids. In a sediment core taken from within the Arabian Sea OMZ, short chain ladderanes made up more than 90% of the total ladderanes at depths greater than 5 cm below sea floor. We also found short chain ladderanes in higher concentrations in hydrolysed sediment residues compared to those freely occurring in lipid extracts, suggesting that they had become bound to the sediment matrix. Furthermore, these matrix-bound short chain ladderanes were found at greater sediment depths than short chain ladderanes in the lipid extract, suggesting that binding to the sediment matrix aids the preservation of these lipids. Though sedimentary degradation of short chain ladderane fatty acids did occur, it appeared to be at a slower rate than that of the original ladderane fatty acids, and short chain ladderane fatty acids were found in sediments from the Late Pleistocene (~ 100 kyr). Together these results suggest that the oxic degradation products of ladderane fatty acids may be suitable biomarkers for past anammox activity in OMZs.

scholarly journals Targeted Guanine Oxidation by a Dinuclear Copper(II) Complex at Single-Stranded/Double-Stranded DNA Junctions.

2006 ◽  
Vol 45 (22) ◽  
pp. 9145-9145
Author(s):  
Lei Li ◽  
Narasimha N. Murthy ◽  
Joshua Telser ◽  
Lev N. Zakharov ◽  
Glenn P. A. Yap ◽  
...  
Keyword(s):  
Guanine Oxidation ◽  
Dinuclear Copper ◽  
Double Stranded Dna ◽  
Dna Junctions

scholarly journals Isolation and Structure Determination of Echinochrome A Oxidative Degradation Products

Molecules ◽  
2020 ◽  
Vol 25 (20) ◽  
pp. 4778
Author(s):  
Natalia P. Mishchenko ◽  
Elena A. Vasileva ◽  
Andrey V. Gerasimenko ◽  
Valeriya P. Grigorchuk ◽  
Pavel S. Dmitrenok ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Degradation Products ◽  
Lethal Dose ◽  
Oxidative Degradation ◽  
Degradation Process ◽  
Oxidation Products ◽  
Chemical Mechanism ◽  
Ionization Mass ◽  
Echinochrome A ◽  
Esi Ms

Echinochrome A (Ech A, 1) is one of the main pigments of several sea urchin species and is registered in the Russian pharmacopeia as an active drug substance (Histochrome®), used in the fields of cardiology and ophthalmology. In this study, Ech A degradation products formed during oxidation by O2 in air-equilibrated aqueous solutions were identified, isolated, and structurally characterized. An HPLC method coupled with diode-array detection (DAD) and mass spectrometry (MS) was developed and validated to monitor the Ech A degradation process and identify the appearing compounds. Five primary oxidation products were detected and their structures were proposed on the basis of high-resolution electrospray ionization mass spectrometry (HR-ESI-MS) as 7-ethyl-2,2,3,3,5,7,8-heptahydroxy-2,3-dihydro-1,4-naphthoquinone (2), 6-ethyl-5,7,8-trihydroxy-1,2,3,4-tetrahydronaphthalene-1,2,3,4-tetraone (3), 2,3-epoxy-7-ethyl-2,3-dihydro-2,3,5,6,8-pentahydroxy-1,4-naphthoquinone (4), 2,3,4,5,7-pentahydroxy-6-ethylinden-1-one (5), and 2,2,4,5,7-pentahydroxy-6-ethylindane-1,3-dione (6). Three novel oxidation products were isolated, and NMR and HR-ESI-MS methods were used to establish their structures as 4-ethyl-3,5,6-trihydroxy-2-oxalobenzoic acid (7), 4-ethyl-2-formyl-3,5,6-trihydroxybenzoic acid (8), and 4-ethyl-2,3,5-trihydroxybenzoic acid (9). The known compound 3-ethyl-2,5-dihydroxy-1,4-benzoquinone (10) was isolated along with products 7–9. Compound 7 turned out to be unstable; its anhydro derivative 11 was obtained in two crystal forms, the structure of which was elucidated using X-ray crystallography as 7-ethyl-5,6-dihydroxy-2,3-dioxo-2,3-dihydrobenzofuran-4-carboxylic acid and named echinolactone. The chemical mechanism of Ech A oxidative degradation is proposed. The in silico toxicity of Ech A and its degradation products 2 and 7–10 were predicted using the ProTox-II webserver. The predicted median lethal dose (LD50) value for product 2 was 221 mg/kg, and, for products 7–10, it appeared to be much lower (≥2000 mg/kg). For Ech A, the predicted toxicity and mutagenicity differed from our experimental data.

scholarly journals Generation, repair and replication of guanine oxidation products

2017 ◽  
Vol 39 (1) ◽  
Author(s):  
Katsuhito Kino ◽  
Masayo Hirao-Suzuki ◽  
Masayuki Morikawa ◽  
Akane Sakaga ◽  
Hiroshi Miyazawa
Keyword(s):  
Oxidation Products ◽  
Guanine Oxidation
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