scholarly journals Soil Influences Colonization of Root-Associated Fungal Endophyte Communities of Maize, Wheat, and Their Progenitors

2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
Deepak Bokati ◽  
José Herrera ◽  
Ravin Poudel
Keyword(s):  
Zea Mays ◽  
Fungal Community ◽  
Fungal Endophytes ◽  
Crop Productivity ◽  
Fungal Endophyte ◽  
Cereal Grains ◽  
Fungal Colonization ◽  
Primary Role ◽  
Plant Host ◽  
Culture Independent

Root-associated fungal endophytes are vital component of root microbiome as some mitigate their host’s abiotic and biotic stress. We characterized root-associated fungal endophytes in cereal grains and their progenitors grown on two different soil-types. We aimed at determining how clay and desert soil affects the colonization of root fungal community. Both culture-dependent and culture-independent methods were employed to identify endophytes that successfully colonized greenhouse-grown host plants. The Internal Transcriber Spacer region of fungal ribosomal DNA was utilized for identification purposes. This study revealed soil as a prominent factor influencing the composition of microfungal communities inhabiting the roots of maize (Zea mays subsp. mays) and its conspecific progenitor, teosinte (Zea mays subsp. parviglumis). Similar results were found in wheat (Triticum aestivum subsp. aestivum) and its progenitor (Triticum monococcum subsp. monococcum). The multidimensional comparisons of Morisita-Horn similarity values of fungal colonists of various host plant taxa indicated that soil plays a primary role in shaping the root fungal community; a secondary effect was plant host identity, even when the plant host is a conspecific. Future studies focused on characterizing root endophytes in other cereal grains, and studying the effect of edaphic factors on fungal colonization, can ultimately contribute to crop productivity.

scholarly journals Plant-microbe specificity varies as a function of elevation

2019 ◽  
Author(s):  
Gerald M. Cobian ◽  
Cameron Egan ◽  
Anthony S. Amend
Keyword(s):  
Fungal Community ◽  
Environmental Gradients ◽  
Species Turnover ◽  
Elevation Gradient ◽  
Fungal Endophytes ◽  
Significant Proportion ◽  
Fungal Endophyte ◽  
Bipartite Network ◽  
Fungal Community Composition ◽  
Plant Host

AbstractSpecialized associations between interacting species are a fundamental determinant of the diversity and distribution of both partners. How specialization of guilds of organisms varies along environmental gradients underpins popular theories of biogeography and macroecology, whereas the degree of specialization of a species is typically considered fixed. However, the extent to which environmental context impacts specialization dynamics is seldom examined empirically. In this study, we examine how specialization within a bipartite network consisting of three co-occurring plant species and their foliar fungal endophyte symbionts changes along a 1 000-meter elevation gradient where host species were held constant. The gradient, along the slope of Mauna Loa shield volcano, represents the entire elevational range of two of the three plants. Network and plant specialization values displayed a parabolic relationship with elevation, and were highest at middle elevations, whereas bipartite associations were least specific at low and high elevations. Shannon’s diversity of fungal endophytes negatively correlated with specificity, and was highest at the ends of the transects. Although plant host was a strong determinant of fungal community composition within sites, fungal species turnover was high among sites and plant host predicted a weak, though significant proportion of compositional variance. There was no evidence of spatial or elevational patterning in fungal community compositon. Our work demonstrates that specificity can be a plastic trait which is influenced by the environment and centrality of the host within its natural range.

scholarly journals Mutualistic Fungal Endophyte Colletotrichum tofieldiae Ct0861 Colonizes and Increases Growth and Yield of Maize and Tomato Plants

Agronomy ◽  
2020 ◽  
Vol 10 (10) ◽  
pp. 1493
Author(s):  
Sandra Díaz-González ◽  
Patricia Marín ◽  
Roberto Sánchez ◽  
Cristina Arribas ◽  
John Kruse ◽  
...  
Keyword(s):  
Plant Species ◽  
Field Experiments ◽  
Fungal Endophytes ◽  
Climate Scenario ◽  
Crop Productivity ◽  
Fungal Endophyte ◽  
Growth And Yield ◽  
Solanum Lycopersicum L ◽  
Nutritional Conditions

Facing rising global food demand in a sustainable way is a great challenge of modern agriculture. Thus, the increase of crop productivity and resilience in an adverse climate scenario is urgently needed. Fungal endophytes have been described as potential biological tools to improve plant yield and tolerance to biotic and abiotic stresses; however, their application in agriculture needs further research. The fungal endophyte Colletotrichum tofieldiae strain Ct0861 establishes a mutualistic interaction with Arabidopsis thaliana, promoting plant growth and silique production at low phosphate conditions. Until now, its ability to colonize and confer benefits to other plant species remained unexplored. Here, we show that Ct0861 colonizes and promotes growth in vitro of maize (Zea mays L.) and tomato (Solanum lycopersicum L.) seedlings, resulting in significantly larger shoot length and weight. Greenhouse and field experiments in optimal nutritional conditions showed an increase between 12% and 22% of yield in both tomato and maize. The inoculated plants were not suffering from phosphate starvation, which points at different modes of action not elucidated yet. These results indicate that the beneficial effect of Ct0861 may extend to other plant species of economic importance, making Ct0861 a potentially valuable inoculant.

scholarly journals Endophytic fungal communities associated with field-grown soybean roots and seeds in the Huang-Huai region of China

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4713 ◽  
Author(s):  
Hongjun Yang ◽  
Wenwu Ye ◽  
Jiaxin Ma ◽  
Dandan Zeng ◽  
Zhenyang Rong ◽  
...  
Keyword(s):  
Stress Tolerance ◽  
Endophytic Fungi ◽  
Fungal Endophytes ◽  
Fungal Endophyte ◽  
Disease Suppression ◽  
Fungal Communities ◽  
Culture Independent ◽  
Soybean Roots ◽  
Abundant Genus ◽  
Culture Dependent

Plants depend on beneficial interactions between roots and fungal endophytes for growth, disease suppression, and stress tolerance. In this study, we characterized the endophytic fungal communities associated with the roots and corresponding seeds of soybeans grown in the Huang-Huai region of China. For the roots, we identified 105 and 50 genera by culture-independent and culture-dependent (CD) methods, respectively, and isolated 136 fungal strains (20 genera) from the CD samples. Compared with the 52 soybean endophytic fungal genera reported in other countries, 28 of the genera we found were reported, and 90 were newly discovered. Even though Fusarium was the most abundant genus of fungal endophyte in every sample, soybean root samples from three cities exhibited diverse endophytic fungal communities, and the results between samples of roots and seeds were also significantly different. Together, we identified the major endophytic fungal genera in soybean roots and seeds, and revealed that the diversity of soybean endophytic fungal communities was influenced by geographical effects and tissues. The results will facilitate a better understanding of soybean–endophytic fungi interaction systems and will assist in the screening and utilization of beneficial microorganisms to promote healthy of plants such as soybean.

scholarly journals Endophytic Fungal Community of Huperzia serrata: Diversity and Relevance to the Production of Huperzine A by the Plant Host

Molecules ◽  
2021 ◽  
Vol 26 (4) ◽  
pp. 892
Author(s):  
Lingli Cui ◽  
Hamza Armghan Noushahi ◽  
Yipeng Zhang ◽  
Jinxin Liu ◽  
Andreea Cosoveanu ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Fungal Community ◽  
Slow Growth ◽  
Specific Treatment ◽  
Huperzine A ◽  
Ionization Mass ◽  
Correlation Index ◽  
Plant Host ◽  
Huperzia Serrata

As the population ages globally, there seem to be more people with Alzheimer’s disease. Unfortunately, there is currently no specific treatment for the disease. At present, Huperzine A (HupA) is one of the best drugs used for the treatment of Alzheimer’s disease and has been used in clinical trials for several years in China. HupA was first separated from Huperzia serrata, a traditional medicinal herb that is used to cure fever, contusions, strains, hematuria, schizophrenia, and snakebite for several hundreds of years in China, and has been confirmed to have acetylcholinesterase inhibitory activity. With the very slow growth of H. serrata, resources are becoming too scarce to meet the need for clinical treatment. Some endophytic fungal strains that produce HupA were isolated from H. serrate in previous studies. In this article, the diversity of the endophytic fungal community within H. serrata was observed and the relevance to the production of HupA by the host plant was further analyzed. A total of 1167 strains were obtained from the leaves of H. serrata followed by the stems (1045) and roots (824). The richness as well as diversity of endophytic fungi within the leaf and stem were higher than in the root. The endophytic fungal community was similar within stems as well as in leaves at all taxonomic levels. The 11 genera (Derxomyces, Lophiostoma, Cyphellophora, Devriesia, Serendipita, Kurtzmanomyces, Mycosphaerella, Conoideocrella, Brevicellicium, Piskurozyma, and Trichomerium) were positively correlated with HupA content. The correlation index of Derxomyces with HupA contents displayed the highest value (CI = 0.92), whereas Trichomerium showed the lowest value (CI = 0.02). Through electrospray ionization mass spectrometry (ESI-MS), it was confirmed that the HS7-1 strain could produce HupA and the total alkaloid concentration was 3.7 ug/g. This study will enable us to screen and isolate the strain that can produce HupA and to figure out the correlation between endophytic fungal diversity with HupA content in different plant organs. This can provide new insights into the screening of strains that can produce HupA more effectively.

scholarly journals Tree Diversity Reduces Fungal Endophyte Richness and Diversity in a Large-Scale Temperate Forest Experiment

Diversity ◽  
2019 ◽  
Vol 11 (12) ◽  
pp. 234 ◽  
Author(s):  
Eric A. Griffin ◽  
Joshua G. Harrison ◽  
Melissa K. McCormick ◽  
Karin T. Burghardt ◽  
John D. Parker
Keyword(s):  
Phylogenetic Diversity ◽  
Large Scale ◽  
High Throughput Sequencing ◽  
Spatial Scales ◽  
Fungal Endophytes ◽  
Fungal Endophyte ◽  
Tree Diversity ◽  
Trophic Levels ◽  
Community Diversity ◽  
And Function

Although decades of research have typically demonstrated a positive correlation between biodiversity of primary producers and associated trophic levels, the ecological drivers of this association are poorly understood. Recent evidence suggests that the plant microbiome, or the fungi and bacteria found on and inside plant hosts, may be cryptic yet important drivers of important processes, including primary production and trophic interactions. Here, using high-throughput sequencing, we characterized foliar fungal community diversity, composition, and function from 15 broadleaved tree species (N = 545) in a recently established, large-scale temperate tree diversity experiment using over 17,000 seedlings. Specifically, we tested whether increases in tree richness and phylogenetic diversity would increase fungal endophyte diversity (the “Diversity Begets Diversity” hypothesis), as well as alter community composition (the “Tree Diversity–Endophyte Community” hypothesis) and function (the “Tree Diversity–Endophyte Function” hypothesis) at different spatial scales. We demonstrated that increasing tree richness and phylogenetic diversity decreased fungal species and functional guild richness and diversity, including pathogens, saprotrophs, and parasites, within the first three years of a forest diversity experiment. These patterns were consistent at the neighborhood and tree plot scale. Our results suggest that fungal endophytes, unlike other trophic levels (e.g., herbivores as well as epiphytic bacteria), respond negatively to increasing plant diversity.

A light and electron microscope study of the fungal endophytes in the sporophyte and gametophyte of Lycopodium cernuum with observations on the gametophyte–sporophyte junction

1992 ◽  
Vol 70 (1) ◽  
pp. 58-72 ◽  
Author(s):  
Jeffrey G. Duckett ◽  
Roberto Ligrone
Keyword(s):  
Root Nodules ◽  
Fungal Endophytes ◽  
Fungal Endophyte ◽  
Peninsular Malaysia ◽  
Epidermal Cells ◽  
Host Cells ◽  
Wall Material ◽  
Intercellular Spaces ◽  
Host Cytoplasm ◽  
Fungal Associations

The ventral epidermal cells of the photosynthetic, surface-living gametophytes of Lycopodium cernuum, collected from moist shaded banks in Peninsular Malaysia, contain an aseptate fungus. In some cells the hyphae are thick walled and form coils encapsulated by a thin layer of host wall material. In others the fungus is thin walled and shows limited differentiation into larger trunk hyphae and arbuscules. The adjacent host cytoplasm, separated from the fungus by a granular interfacial matrix, contains numerous chloroplasts, mitochondria, and microtubules. The hyphae contact the substratum via the ventral walls of the epidermal cells and the rhizoids are free from infection. In the protocorm and root nodules, aseptate hyphae initially colonize mucilage-filled schizogenous intercellular spaces. Subsequent invasion of the host cells is associated with the development of massive overgrowths of host wall material. The fungal associations in L. cernuum share a mixture of attributes otherwise found in different angiosperm mycorrhizae and in mycotrophic relationships in liverworts. Wall ingrowths are present in both the gametophyte and sporophyte cells in the placenta of L. cernuum. The very limited development of the placenta, compared with L. appressum, certain bryophytes and ferns, the diminutive size, and early senescence of the gametophytes of L. cernuum are all linked to the presence of the protocorm. This massive absorptive organ, homologous to a foot, in terms of its position in sporophyte ontogeny, but external to the parent gametophyte, derives its nutrition partly from photosynthesis and partly from its fungal endophyte. Key words: chloroplasts, Lycopodium, mycorrhiza, pteridophytes, root nodules, symbiosis, transfer cells.

Revealing the endophytic mycoflora in tea (Camellia sinensis) leaves in Sri Lanka: the first comprehensive study

Phytotaxa ◽  
2021 ◽  
Vol 514 (3) ◽  
pp. 247-260
Author(s):  
KASUN THAMBUGALA ◽  
DINUSHANI DARANAGAMA ◽  
SAGARIKA KANNANGARA ◽  
THENUKA KODITUWAKKU
Keyword(s):  
Sri Lanka ◽  
Camellia Sinensis ◽  
Endophytic Fungi ◽  
Sequence Data ◽  
Fungal Endophytes ◽  
Fungal Endophyte ◽  
Tea Leaves ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Rdna Sequence Data

Endophytic fungi are a diverse group of microorganisms that live asymptomatically in healthy tissues of host and they have been reported from all kinds of plant tissues such as leaves, stems, roots, flowers, and fruits. In this study, fungal endophytes associated with tea leaves (Camellia sinensis) were collected from Kandy, Kegalle, and Nuwara Eliya districts in Sri Lanka and were isolated, characterized, and identified. A total of twenty endophytic fungal isolates belonging to five genera were recovered and ITS-rDNA sequence data were used to identify them. All isolated endophytic fungal strains belong to the phylum Ascomycota and the majority of these isolates were identified as Colletotrichum species. Phyllosticta capitalensis was the most commonly found fungal endophyte in tea leaves and was recorded in all three districts where the samples were collected. This is the very first investigation on fungal endophytes associated with C. sinensis in Sri Lanka based on molecular sequence data. In addition, a comprehensive account of known endophytic fungi reported worldwide on Camellia sinensis is provided.

scholarly journals Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria

Microbiome ◽  
2020 ◽  
Vol 8 (1) ◽  
Author(s):  
Bastian Seelbinder ◽  
Jiarui Chen ◽  
Sascha Brunke ◽  
Ruben Vazquez-Uribe ◽  
Rakesh Santhaman ◽  
...  
Keyword(s):  
Fungal Community ◽  
Fungal Infections ◽  
Cell Damage ◽  
Fungal Colonization ◽  
Antibiotic Administration ◽  
Bacterial Strains ◽  
Human Gut ◽  
Healthy Human ◽  
Shotgun Metagenomics ◽  
Fungal Interactions

Abstract Background Antibiotic treatment has a well-established detrimental effect on the gut bacterial composition, but effects on the fungal community are less clear. Bacteria in the lumen of the gastrointestinal tract may limit fungal colonization and invasion. Antibiotic drugs targeting bacteria are therefore seen as an important risk factor for fungal infections and induced allergies. However, antibiotic effects on gut bacterial-fungal interactions, including disruption and resilience of fungal community compositions, were not investigated in humans. We analysed stool samples collected from 14 healthy human participants over 3 months following a 6-day antibiotic administration. We integrated data from shotgun metagenomics, metatranscriptomics, metabolomics, and fungal ITS2 sequencing. Results While the bacterial community recovered mostly over 3 months post treatment, the fungal community was shifted from mutualism at baseline to competition. Half of the bacterial-fungal interactions present before drug intervention had disappeared 3 months later. During treatment, fungal abundances were associated with the expression of bacterial genes with functions for cell growth and repair. By extending the metagenomic species approach, we revealed bacterial strains inhibiting the opportunistic fungal pathogen Candida albicans. We demonstrated in vitro how C. albicans pathogenicity and host cell damage might be controlled naturally in the human gut by bacterial metabolites such as propionate or 5-dodecenoate. Conclusions We demonstrated that antibacterial drugs have long-term influence on the human gut mycobiome. While bacterial communities recovered mostly 30-days post antibacterial treatment, the fungal community was shifted from mutualism towards competition.

scholarly journals Relationships between Foliar Fungal Endophyte Communities and Ecophysiological Traits of CAM and C3 Epiphytic Bromeliads in a Neotropical Rainforest

Diversity ◽  
2020 ◽  
Vol 12 (10) ◽  
pp. 378 ◽  
Author(s):  
Peter H. Tellez ◽  
Carrie L. Woods ◽  
Stephen Formel ◽  
Sunshine A. Van Bael
Keyword(s):  
Fungal Endophytes ◽  
Leaf Traits ◽  
Fungal Endophyte ◽  
Leaf Water Content ◽  
Leaf Toughness ◽  
Vascular Epiphytes ◽  
Ecophysiological Traits ◽  
Photosynthetic Pathways ◽  
Relative Abundances ◽  
Epiphytic Bromeliads

Vascular epiphytes contribute up to 35% of the plant diversity and foliar biomass of flowering plants. The family Bromeliaceae is a monophyletic group of plants native to the Neotropics. Epiphytic bromeliads form associations with distinct groups of organisms but their relationship with foliar fungal endophytes remain underexplored. In this study we examined the relationship of foliar fungal endophytes to host photosynthetic pathways and associated ecophysiological traits. We sampled the fungal endophyte communities of 67 host individuals in six epiphytic bromeliad species differing in C3 and crassulacean acid metabolism (CAM) photosynthetic pathways. We tested whether endophyte assemblages were associated with ecophysiological leaf traits related to host photosynthetic pathways. Our results indicate that (1) C3 and CAM bromeliads host dissimilar endophyte assemblages, (2) endophyte communities in C3 bromeliads are characterized by variable relative abundances of fungal orders; conversely, CAM associated endophyte communities were characterized by consistent relative abundances of fungal orders, and (3) endophyte communities in bromeliads are distributed along a continuum of leaf toughness and leaf water content. Taken together, our study suggests that host physiology and associated ecophysiological traits of epiphytic bromeliads may represent biotic filters for communities of fungal endophytes in the tropics.

scholarly journals Organic wastes from bioenergy and ecological sanitation as a soil fertility improver: a field experiment in a tropical Andosol

SOIL ◽  
2016 ◽  
Vol 2 (2) ◽  
pp. 147-162 ◽  
Author(s):  
Ariane Krause ◽  
Thomas Nehls ◽  
Eckhard George ◽  
Martin Kaupenjohann
Keyword(s):  
Zea Mays ◽  
Crop Yield ◽  
Nutrient Management ◽  
Chemical Properties ◽  
Nutrient Status ◽  
Crop Productivity ◽  
Exchange Capacity ◽  
Biogas Slurry ◽  
Crop Species ◽  
P Deficiency

Abstract. Andosols require the regular application of phosphorus (P) to sustain crop productivity. On an Andosol in NW Tanzania, we studied the short-term effects of amending standard compost, biogas slurry and CaSa compost (containing biochar and sanitized human excreta) on (i) the soil's physico-chemical properties, on (ii) biomass growth and crop productivity, and on (iii) the plants' nutrient status. The practice-oriented experiment design included the intercropping of seven locally grown crop species planted on 9 m2 plots with five repetitions arranged as a Latin rectangle. Differences in plant growth (biomass production and crop yield, e.g., of Zea mays) and crop nutrition (total C, N, P, K, Ca, Mg, Zn, etc.) were related to pH, CEC (cation exchange capacity), total C and the availability of nutrients (N, P, K, etc.) and water (water retention characteristics, bulk density, etc.) in the soil. None of the amendments had any significant effect on soil water availability, so the observed variations in crop yield and plant nutrition are attributed to nutrient availability. Applying CaSa compost increased the soil pH from 5.3 to 5.9 and the level of available P from 0.5 to 4.4 mg per kg. Compared to the control, adding biogas slurry, standard compost and CaSa compost increased the aboveground biomass of Zea mays by, respectively, 140, 154 and 211 %. The grain yields of maize on soil treated with biogas slurry, standard compost and CaSa compost were, respectively, 2.63, 3.18 and 4.40 t ha−1, compared to only 1.10 t ha−1 on unamended plots. All treatments enhanced crop productivity and increased the uptake of nutrients into the maize grains. The CaSa compost was most effective in mitigating P deficiency and soil acidification. We conclude that all treatments are viable as a substitute for synthetic fertilizers. Nevertheless, further steps are required to integrate the tested soil amendments into farm-scale nutrient management and to balance the additions and removals of nutrients, so that the cycle can be closed.

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