scholarly journals Segmentation of Retinal Blood Vessels Based on Cake Filter

2015 ◽  
Vol 2015 ◽  
pp. 1-11 ◽  
Author(s):  
Xi-Rong Bao ◽  
Xin Ge ◽  
Li-Huang She ◽  
Shi Zhang

Segmentation of retinal blood vessels is significant to diagnosis and evaluation of ocular diseases like glaucoma and systemic diseases such as diabetes and hypertension. The retinal blood vessel segmentation for small and low contrast vessels is still a challenging problem. To solve this problem, a new method based on cake filter is proposed. Firstly, a quadrature filter band called cake filter band is made up in Fourier field. Then the real component fusion is used to separate the blood vessel from the background. Finally, the blood vessel network is got by a self-adaption threshold. The experiments implemented on the STARE database indicate that the new method has a better performance than the traditional ones on the small vessels extraction, average accuracy rate, and true and false positive rate.

2020 ◽  
Vol 2020 ◽  
pp. 1-11
Author(s):  
Yuliang Ma ◽  
Xue Li ◽  
Xiaopeng Duan ◽  
Yun Peng ◽  
Yingchun Zhang

Purpose. Retinal blood vessel image segmentation is an important step in ophthalmological analysis. However, it is difficult to segment small vessels accurately because of low contrast and complex feature information of blood vessels. The objective of this study is to develop an improved retinal blood vessel segmentation structure (WA-Net) to overcome these challenges. Methods. This paper mainly focuses on the width of deep learning. The channels of the ResNet block were broadened to propagate more low-level features, and the identity mapping pathway was slimmed to maintain parameter complexity. A residual atrous spatial pyramid module was used to capture the retinal vessels at various scales. We applied weight normalization to eliminate the impacts of the mini-batch and improve segmentation accuracy. The experiments were performed on the DRIVE and STARE datasets. To show the generalizability of WA-Net, we performed cross-training between datasets. Results. The global accuracy and specificity within datasets were 95.66% and 96.45% and 98.13% and 98.71%, respectively. The accuracy and area under the curve of the interdataset diverged only by 1%∼2% compared with the performance of the corresponding intradataset. Conclusion. All the results show that WA-Net extracts more detailed blood vessels and shows superior performance on retinal blood vessel segmentation tasks.


2019 ◽  
Vol 9 (6) ◽  
pp. 1112-1118 ◽  
Author(s):  
Dan Yang ◽  
Mengcheng Ren ◽  
Bin Xu

Retinal blood vessel feature is one of crucial biomarkers for ophthalmologic and cardiovascular diseases, efficiency image segmentation technologies will help doctors diagnose these related diseases. We propose an improved deep CNN model to segment retinal blood vessels. Our method includes three steps: Data augmentation, Image preprocessing methods and Model training. The data augmentation uses the rotation and image mirroring to make the training image better generalization. The CLAHE algorithm is used for image preprocessing, which can reduce the image noise and enhance tiny retinal blood vessels features. Finally, we used a deep CNN model combined with U-Net and Dense-Net structure to train retinal blood vessel image. The result of proposed model was tested on public available dataset DRIVE, achieving an average accuracy 0.951, specificity 0.973, sensitivity 0.797 and the average AUC is 0.885. The results show its potential for clinical application.


2020 ◽  
Vol 50 (2) ◽  
pp. 49-57
Author(s):  
Alice Krestanova ◽  
Jan Kubicek ◽  
Marek Penhaker ◽  
Juraj Timkovic

For the retinal blood vessels segmentation, we used a method, which is based on the morphological operations. The output of this process is extracted retinal binary image, where is situated main blood vessels. In this paper is used dataset of images (2800 images) from device RetCam3. Before applying the image processing, it was selected 30 images with diagnosed pre-plus diseases, and it is divided into two groups with low contrast and good contrast images. In the next part of the analysis, it was analyzing and showing blood vessels with tortuosity. Tortuosity is a symptom of ROP (retinopathy of prematurity). The clinical physicians evaluate tortuosity by visual comparison of the retinal images images. For this reason, it was suggested model which can automatically indicate the tortuosity of the retinal blood vessels by setting a threshold of the blood vessels curvature.


2019 ◽  
Vol 2 (3) ◽  
pp. 43-67
Author(s):  
Sanyukta Chetia ◽  
SR Nirmala

Purpose: The study of retinal blood vessel morphology is of great importance in retinal image analysis. The retinal blood vessels have a number of distinct features such as width, diameter, tortuosity, etc. In this paper, a method is proposed to measure the tortuosity of retinal blood vessels obtained from retinal fundus images. Tortuosity is a situation in which blood vessels become tortuous, that is, curved or non-smooth. It is one of the earliest changes that occur in blood vessels in some retinal diseases. Hence, its detection at an early stage can prevent the progression of retinal diseases such as diabetic retinopathy, hypertensive retinopathy, retinopathy of prematurity, etc. The present study focuses on the measurement of retinal blood vessel tortuosity for the analysis of hypertensive retinopathy. Hypertensive retinopathy is a condition in which the retinal vessels undergo changes and become tortuous due to long term high blood pressure. Early recognition of hypertensive retinopathy signs remains an important step in determining the target-organ damage and risk assessment of hypertensive patients. Hence, this paper attempts to estimate tortuosity using image-processing techniques that have been tested on artery and vein segments of retinal images. Design: Image processing-based model designed to measure blood vessel tortuosity. Methods: In this paper, a novel image processing-based model is proposed for tortuosity measurement. This parameter will be helpful for analyzing hypertensive retinopathy. To test the eff ectiveness of the system in determining tortuosity, the method is first applied on a set of synthetically generated blood vessels. Then, the method is repeated on blood vessel (both artery and vein) segments extracted from retinal images collected from publicly available databases and on images collected from a local eye hospital. The blood vessel segment images that are used in the method are binary images where blood vessels are represented by white pixels (foreground), while black pixels represent the background. Vessels are then classified into normal, moderately tortuous, and severely tortuous by following the analysis performed on the images in the Retinal Vessel Tortuosity Data Set (RET-TORT) obtained from BioIm Lab, Laboratory of Biomedical Imaging (Padova, Italy). This database consists of 30 artery segments and 30 vein segments, which were manually ordered on the basis of increasing tortuosity by Dr. S. Piermarocchi, a retinal specialist belonging to the Department of Ophthalmology of the University of Padova (Italy). The artery and vein segments with the fewest number of turns are given a low tortuosity ranking, while those with the greatest number of turns are given a high tortuosity ranking by the expert. Based on this concept, our proposed method defines retinal image segments as normal when they present the fewest number of twists/turns, moderately tortuous when they present more twists/turns than normal but fewer than severely tortuous vessels, and severely tortuous when they present a greater number of twists/turns than moderately tortuous vessels. On implementing our image processing-based method on binary blood vessel segment images that are represented by white pixels, it is found that the vessel pixel (white pixels) count increases with increasing vessel tortuosity. That is, for normal blood vessels, the white pixel count is less compared to moderately tortuous and severely tortuous vessels. It should be noted that the images obtained from the different databases and from the local hospital for this experiment are not hypertensive retinopathy images. Instead, they are mostly normal eye images and very few of them show tortuous blood vessels. Results: The results of the synthetically generated vessel segment images from the baseline for the evaluation of retinal blood vessel tortuosity. The proposed method is then applied on the retinal vessel segments that are obtained from the DRIVE and HRF databases, respectively. Finally, to evaluate the capability of the proposed method in determining the tortuosity level of the blood vessels, the method is tested with a standard tortuous database, namely, the RET-TORT database. The results are then compared with the tortuosity level mentioned in the database. It was found that our method is able to classify blood vessel images as normal, moderately tortuous, and severely tortuous, with results closely matching the clinical ordering provided by the expert in the RET-TORT database. Subjective evaluation was also performed by research scholars and postgraduate students to cross-validate the results. Conclusion: The close correlation between the tortuosity evaluation using the proposed method and the clinical ordering of retinal vessels as provided by the retinal specialist in the RET-TORT database shows that, although simple, this method can evaluate the tortuosity of vessel segments effectively.  


Author(s):  
Alice E. Milne ◽  
Roberta Bianco ◽  
Katarina C. Poole ◽  
Sijia Zhao ◽  
Andrew J. Oxenham ◽  
...  

AbstractOnline experimental platforms can be used as an alternative to, or complement, lab-based research. However, when conducting auditory experiments via online methods, the researcher has limited control over the participants’ listening environment. We offer a new method to probe one aspect of that environment, headphone use. Headphones not only provide better control of sound presentation but can also “shield” the listener from background noise. Here we present a rapid (< 3 min) headphone screening test based on Huggins Pitch (HP), a perceptual phenomenon that can only be detected when stimuli are presented dichotically. We validate this test using a cohort of “Trusted” online participants who completed the test using both headphones and loudspeakers. The same participants were also used to test an existing headphone test (AP test; Woods et al., 2017, Attention Perception Psychophysics). We demonstrate that compared to the AP test, the HP test has a higher selectivity for headphone users, rendering it as a compelling alternative to existing methods. Overall, the new HP test correctly detects 80% of headphone users and has a false-positive rate of 20%. Moreover, we demonstrate that combining the HP test with an additional test–either the AP test or an alternative based on a beat test (BT)–can lower the false-positive rate to ~ 7%. This should be useful in situations where headphone use is particularly critical (e.g., dichotic or spatial manipulations). Code for implementing the new tests is publicly available in JavaScript and through Gorilla (gorilla.sc).


2006 ◽  
Vol 69 (1) ◽  
pp. 205-210 ◽  
Author(s):  
MICHAEL J. MYERS ◽  
HAILE F. YANCY ◽  
MICHAEL ARANETA ◽  
JENNIFER ARMOUR ◽  
JANICE DERR ◽  
...  

A method trial was initiated to validate the use of a commercial DNA forensic kit to extract DNA from animal feed as part of a PCR-based method. Four different PCR primer pairs (one bovine pair, one porcine pair, one ovine primer pair, and one multispecies pair) were also evaluated. Each laboratory was required to analyze a total of 120 dairy feed samples either not fortified (control, true negative) or fortified with bovine meat and bone meal, porcine meat and bone meal (PMBM), or lamb meal. Feeds were fortified with the animal meals at a concentration of 0.1% (wt/wt). Ten laboratories participated in this trial, and each laboratory was required to evaluate two different primer pairs, i.e., each PCR primer pair was evaluated by five different laboratories. The method was considered to be validated for a given animal source when three or more laboratories achieved at least 97% accuracy (29 correct of 30 samples for 96.7% accuracy, rounded up to 97%) in detecting the fortified samples for that source. Using this criterion, the method was validated for the bovine primer because three laboratories met the criterion, with an average accuracy of 98.9%. The average false-positive rate was 3.0% in these laboratories. A fourth laboratory was 80% accurate in identifying the samples fortified with bovine meat and bone meal. A fifth laboratory was not able to consistently extract the DNA from the feed samples and did not achieve the criterion for accuracy for either the bovine or multispecies PCR primers. For the porcine primers, the method was validated, with four laboratories meeting the criterion for accuracy with an average accuracy of 99.2%. The fifth laboratory had a 93.3% accuracy outcome for the porcine primer. Collectively, these five laboratories had a 1.3% false-positive rate for the porcine primer. No laboratory was able to meet the criterion for accuracy with the ovine primers, most likely because of problems with the synthesis of the primer pair; none of the positive control DNA samples could be detected with the ovine primers. The multispecies primer pair was validated in three laboratories for use with bovine meat and bone meal and lamb meal but not with PMBM. The three laboratories had an average accuracy of 98.9% for bovine meat and bone meal, 97.8% for lamb meal, and 63.3% for PMBM. When examined on an individual laboratory basis, one of these four laboratories could not identify a single feed sample containing PMBM by using the multispecies primer, whereas the other laboratory identified only one PMBM-fortified sample, suggesting that the limit of detection for PMBM with this primer pair is around 0.1% (wt/wt). The results of this study demonstrated that the DNA forensic kit can be used to extract DNA from animal feed, which can then be used for PCR analysis to detect animal-derived protein present in the feed sample.


2021 ◽  
Vol 2021 ◽  
pp. 1-13
Author(s):  
Zhike Zhang ◽  
Shuixin Zhang ◽  
Hongyu Feng

Data extraction and visualization of 3D medical images of ocular blood vessels are performed by geometric transformation algorithm, which first performs random resonance response in a global sense to achieve detection of high-contrast coarse blood vessels and then redefines the input signal as a local image shielding the global detection result to achieve enhanced detection of low-contrast microfine vessels and complete multilevel random resonance segmentation detection. Finally, a random resonance detection method for fundus vessels based on scale decomposition is proposed, in which the images are scale decomposed, the high-frequency signals containing detailed information are randomly resonantly enhanced to achieve microfine vessel segmentation detection, and the final vessel segmentation detection results are obtained after fusing the low-frequency image signals. The optimal stochastic resonance response of the nonlinear model of neurons in the global sense is obtained to detect the high-grade intensity signal; then, the input signal is defined as a local image with high-contrast blood vessels removed, and the parameters are optimized before the detection of the low-grade intensity signal. Finally, the multilevel random resonance response is fused to obtain the segmentation results of the fundus retinal vessels. The sensitivity of the multilevel segmentation method proposed in this paper is significantly improved compared with the global random resonance results, indicating that the method proposed in this paper has obvious advantages in the segmentation of vessels with low-intensity levels. The image library was tested, and the experimental results showed that the new method has a better segmentation effect on low-contrast microscopic blood vessels. The new method not only makes full use of the noise for weak signal detection and segmentation but also provides a new idea of how to achieve multilevel segmentation and recognition of medical images.


2020 ◽  
Author(s):  
Alice E. Milne ◽  
Roberta Bianco ◽  
Katarina C. Poole ◽  
Sijia Zhao ◽  
Andrew J. Oxenham ◽  
...  

AbstractOnline experimental platforms can be used as an alternative, or complement, to lab-based research. However, when conducting auditory experiments via online methods, the researcher has limited control over the participants’ listening environment. We offer a new method to probe one aspect of that environment, headphone use. Headphones not only provide better control of sound presentation but can also “shield” the listener from background noise. Here we present a rapid (< 3 minute) headphone screening test based on Huggins Pitch (HP), a perceptual phenomenon that can only be detected when stimuli are presented dichotically. We validate this test using a cohort of “Trusted” online participants who completed the test using both headphones and loudspeakers. The same participants were also used to test an existing headphone test (AP test; Woods et al., 2017, Attention Perception Psychophysics). We demonstrate that compared to the AP test, the HP test has a higher selectivity for headphone users, rendering it as a compelling alternative to existing methods. Overall, the new HP test correctly detects 80% of headphone users and has a false positive rate of 20%. Moreover, we demonstrate that combining the HP test with an additional test - either the AP test or an alternative based on a beat test (BT) - can lower the false positive rate to ∼7%. This should be useful in situations where headphone use is particularly critical (e.g. dichotic or spatial manipulations). Code for implementing the new tests is publicly available in JavaScript and through Gorilla (gorilla.sc).


2010 ◽  
Vol 1 (3) ◽  
pp. 16-27 ◽  
Author(s):  
I. K. E. Purnama ◽  
K. Y. E. Aryanto ◽  
M. H. F. Wilkinson

Retinal blood vessels can give information about abnormalities or disease by examining its pathological changes. One abnormality is diabetic retinopathy, characterized by a disorder of retinal blood vessels resulting from diabetes mellitus. Currently, diabetic retinopathy is one of the major causes of human vision abnormalities and blindness. Hence, early detection can lead to proper treatment, and segmentation of the abnormality provides a map of retinal vessels that can facilitate the assessment of the characteristics of these vessels. In this paper, the authors propose a new method, consisting of a sequence of procedures, to segment blood vessels in a retinal image. In the method, attribute filtering with a so-called Max-Tree is used to represent the image based on its gray value. The filtering process is done using the branches filtering approach in which the tree branches are selected based on the non-compactness of the nodes. The selection is started from the leaves. This experiment was performed on 40 retinal images, and utilized the manual segmentation created by an observer to validate the results. The proposed method can deliver an average accuracy of 94.21%.


Author(s):  
Ahmed H. Asad ◽  
Ahmad Taher Azar ◽  
Aboul Ella Hassanien

Abnormality detection plays an important role in many real-life applications. Retinal vessel segmentation algorithms are the critical components of circulatory blood vessel Analysis systems for detecting the various abnormalities in retinal images. Traditionally, the vascular network is mapped by hand in a time-consuming process that requires both training and skill. Automating the process allows consistency, and most importantly, frees up the time that a skilled technician or doctor would normally use for manual screening. Several studies were carried out on the segmentation of blood vessels in general; however, only a small number of them were associated to retinal blood vessels. In this paper, an approach for segmenting retinal blood vessels is proposed using only ant colony system. Eight features are selected for the developed system; four are based on gray-level and the other features on Hu moment-invariants. The features are directly computed from values of image pixels, so they take about 90 seconds in computation. The performance of the proposed structure is evaluated in terms of accuracy, true positive rate (TPR) and false positive rate (FPR). The results showed that the overall accuracy and sensitivity of the presented approach achieved 90.28% and 74%, respectively.


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