scholarly journals The Role of Interleukin-1Beta and Other Potential Genetic Markers as Indicators of Gastric Cancer Risk

2003 ◽  
Vol 17 (suppl b) ◽  
pp. 8B-12B ◽  
Author(s):  
Esther Troost ◽  
Georgina L Hold ◽  
Malcolm G Smith ◽  
Wong-Ho Chow ◽  
Charles S Rbkin ◽  
...  

Helicobacter pyloriinfects half of the world’s population, and is associated with asymptomatic gastritis and also with more serious conditions such as peptic ulcer disease and gastric carcinoma. The clinical outcome is largely dependent on the severity and distribution of theH pylori-induced gastritis, but the pathogenesis remains poorly understood. Bacterial virulence factors and environmental influences contribute to the pathogenesis, but do not explain the divergent outcomes. There is emerging evidence that host genetic factors play a key role in determining the clinical outcome ofH pyloriinfection. In particular, proinflammatory genotypes of the interleukin-1 beta (IL-1β) gene are associated with an increased risk of gastric cancer and its precursors. The effects are most likely mediated through the induction of hypochlorhydria and severe corpus gastritis with the subsequent development of gastric atrophy. The roles of IL-1β and other host genetic factors in the pathogenesis ofH pylorirelated cancer are discussed in this article.

2012 ◽  
Vol 2012 ◽  
pp. 1-9 ◽  
Author(s):  
Bruna Maria Roesler ◽  
Sandra Cecília Botelho Costa ◽  
José Murilo Robilotta Zeitune

Helicobacter pylori is the most important carcinogen for gastric adenocarcinoma. Bacterial virulence factors are essential players in modulating the immune response involved in the initiation of carcinogenesis in the stomach; host genetic factors contribute to the regulation of the inflammatory response and to the aggravation of mucosal damage. In terms of environmental factors, salt intake and smoking contribute to the development of lesions. Various therapeutic schemes are proposed to eradicate H. pylori infection, which could potentially prevent gastric cancer, offering the greatest benefit if performed before premalignant changes of the gastric mucosa have occurred.


1998 ◽  
Vol 44 (3) ◽  
pp. 201-210 ◽  
Author(s):  
Carlo A Fallone ◽  
Alan N Barkun ◽  
Markus U Göttke ◽  
Robin N Beech

Helicobacter pylori is present in 40-60% of the population and approximately 10-20% of these infected individuals suffer from a H. pylori associated disease such as peptic ulcer disease or gastric cancer. This article reviews the potential bacterial determinants responsible for and markers predictive of both the acquisition of H. pylori infection and subsequent clinical outcome; i.e., asymptomatic infection or disease. The acquisition of H. pylori infection depends on exposure (hence the increased risk in lower socioeconomic groups and developing nations) to viable bacteria with at least a functional urease gene in a susceptible host. Once infection occurs, bacterial virulence factors, including the vacuolating cytotoxin, and genes of the cag pathogenicity island, as well as nonbacterial factors may determine disease outcome. Future research is being directed at discovering other bacterial virulence factors responsible for the different clinical outcomes of H. pylori infection. This will be greatly enhanced by the recent release of the complete genome sequence of H. pylori. The determination of the relative importance of each of these recognized and other as yet unrecognized factors responsible for disease outcome will assist in the appropriate targeting of patients in the treatment of H. pylori infection.Key words: Helicobacter pylori, genetics, virulence, bacterial.


2021 ◽  
Author(s):  
Raimonds Rescenko ◽  
Raitis Peculis ◽  
Monta Ustinova ◽  
Laura Ansone ◽  
Helena Daiga Litvina ◽  
...  

The severity of COVID-19 disease is partly determined by host genetic factors that have been reported by GWAS. We evaluated nine previously reported genome-wide significant associations regardless of the disease severity in a representative sample from the population of Latvia. Our cohort consisted of 475 SARS-CoV-2 positive cases, from which 146 were hospitalized individuals and 2217 controls. We found three variants from Neanderthal introgression event at the 3p21.31 region to be significantly associated with increased risk of SARS-CoV-2 infection and hospitalization status. The strongest association was displayed by rs71325088 with Bonferroni adjusted P=0.007, OR=1.46 [95% CI 1.17-1.81]. We performed fine-mapping by exploring 1 Mb region at 3p21.31 locus and identified 9 SNPs with even lower p-values with the strongest association estimated for rs2191031 P=5e-05, OR = 1.40[CI 95% 1.19-1.64] located in the LZTFL1. We show clear replication of 3p.21.31 locus in an independent cohort which favors further functional investigation of leading variants.


Blood ◽  
2016 ◽  
Vol 128 (22) ◽  
pp. 2438-2438
Author(s):  
Binal N. Shah ◽  
Philip E Thuma ◽  
N. Scott Reading ◽  
Josef T. Prchal ◽  
Victor R. Gordeuk

Abstract Host genetic factors that influence the outcome of Plasmodium falciparum malaria infection are not fully understood. Glucose-6-phosphate dehydrogenase (G6PD), an X-linked gene, encodes the sole enzyme in red blood cells that produces NADPH for protection from reactive oxygen species. G6PD A+ (G6PD c. 376G) is an African specific polymorphism reported to have reduced activity1 but no apparent phenotype; G6PD A- (G6PD c 202A/376G) is a related polymorphism with decreased activity and increased risk for oxidant-induced hemolysis2. Previous investigators have reported that G6PD deficiency provides a protective effect from malaria3. A recent Malaria Genomic Epidemiology Network (MalariaGEN) study with almost 30,000 participants reported that G6PD A- increases the risk for severe malarial anemia4. Cytochrome b5 reductase 3 (CYB5R3) in red blood cells transfers electrons from NADH to cytochrome b5, which in turn converts methemoglobin to hemoglobin. The CYB5R3 T117S variant, an African-specific polymorphism with a prevalence higher than previously described African-specific polymorphisms (allele frequency .23)5, is not associated with methemoglobinemia. We hypothesized that CYB5R3 T117S may protect from severe malarial anemia, possibly by enhanced anti-oxidative potential of erythrocytes through higher NADH levels. We isolated DNA from dried blood spots from 133 children (age < 6 years) who presented to hospital in southern Zambia with clinical malaria. Sixty-seven had severe anemia (hematocrit <15%) and 66 had uncomplicated malaria (hematocrit ≥18%); all had normal coma scores. We determined G6PD A+, G6PD A- and CYB5R3 T117S by Taqman genotyping. We also isolated DNA from plasma samples and genotyped for CYB5R3 T117S. There was 97.7% agreement in the genotyping. The overall prevalence of G6PD A+ was 20.3% and of G6PD A- 12.0%. The gene frequency of CYB5R3 T117S was .31. We examined the association of these genotypes with severe malarial anemia in logistic regression models that adjusted for body weight, duration of febrile illness before presentation, and treatment with traditional herbal medicine or sulfadoxine-pyrimethamine before presentation6. In keeping with the MalariaGEN study, we found that G6PD A- increased the odds of severe malarial anemia (OR 8.2; 95% CI 1.6-42.7l; P=0.013), but we also observed a trend with G6PD A+ (OR 2.1, 95% CI 0.7-6.5; P=0.22). We therefore assessed the additive effect of these polymorphisms and observed a progressive increase in the risk with G6PD A+ and G6PD A- (OR 2.6, 95% CI 1.3-5.3). We added CYB5R3 T117S to this model and found a non-significant trend to a progressive reduction in the risk of severe anemia with heterozygosity and homozygosity for T117S (OR = 0.7, 95% CI 0.3-1.4; P=0.29). In further analysis, we observed an interaction between CYB5R3 T117S and G6PD genotype in the risk for severe anemia (P =0.092). We therefore stratified our analysis according to the presence or absence of G6PD variants. In the absence of G6PD A+ or A-, CYB5R3T117S offered protection against severe anemia (OR 0.3, 95% CI 0.1-0.9, P=0.035) in an additive model. In contrast, in the presence of G6PD A+ or G6PDA-, CYB5R3 T117S mutation tended to increase the odds of severe anemia in malaria (OR 3.1, 95% CI 0.6-15.9, P=0.18). In summary, 1) we confirm the association of G6PD A- with severe malarial anemia in southern Zambian children, 2) we observe an additive increased risk of severe malarial anemia with G6PD A+ and G6PD A-, and 3) we report heterogeneity of the effect of CYB5R3 T117S on the risk of severe anemia according to G6PD A+ and A- status. The observations with CYB5R3 T117S need to be confirmed in a larger cohort and the underlying mechanisms worked out through laboratory and translational research. We conclude that the combined effect of host genetic factors in two different red cell redox regulating enzymes may affect the outcome of P. falciparum infection. ReferencesGomez-Manzo, S. et al. International journal of molecular sciences16, 28657-28668 (2015).Luzzatto, L., Nannelli, C. & Notaro, R. Hematology/oncology clinics of North America30, 373-393 (2016).Ruwende, C. et al. Nature376, 246-249 (1995).Rockett, K. A. et al. Nature genetics46, 1197-1204 (2014).Jenkins, M. M. & Prchal, J. T. Hum Genet99, 248-250 (1997).Thuma, P. E. et al. J Infect Dis203, 211-219 (2011). Disclosures Thuma: Malaria Institute at Macha: Employment.


1999 ◽  
Vol 80 (12) ◽  
pp. 3233-3240 ◽  
Author(s):  
Claire S. Brady ◽  
Margaret F. Duggan-Keen ◽  
Judith A. Davidson ◽  
Jenny M. Varley ◽  
Peter L. Stern

Infection with human papillomavirus type 16 (HPV-16) confers a high risk for the development of cervical neoplasia. Variants of this virus may interact differentially with host genetic factors, possibly altering the disease course. Thus, HPV-16 E6 variants may differ in their ability to degrade p53 whereas the polymorphic p53 alleles may provide more or less susceptible substrates for the viral oncogene product. Also, E6 variants may differ in immunogenicity by generating different peptides for presentation by polymorphic HLA molecules to specific T cells. This study examines HPV-16 E6 sequence variation in cervical carcinomas from the UK and its relationship to polymorphism of HLA and p53 and to clinical parameters. Sequence analysis of the HPV-16 E6 ORF from 77 tumour biopsies detected the viral prototype sequence in 38% of cases. The most common variation detected was a T to G transition at base pair 350, resulting in an amino acid change from a leucine to a valine. Overall, the frequencies of 350T and 350G sequences were similar (49·4% and 50·6% respectively). Other mutations of lower frequencies were detected together with and independently of 350G. HPV-16 E6 sequence variation at base pair 350 did not correlate with HLA genotype or clinical outcome. There was no difference in the distribution of p53 proline and arginine alleles between HPV-16-positive cervical carcinoma patients and local controls, and no influence on clinical outcome; however, there was a trend for an increased frequency of p53 arginine homozygotes among the 350T carcinoma patients.


2018 ◽  
Vol 27 (4) ◽  
pp. 363-369 ◽  
Author(s):  
Gintare Dargiene ◽  
Greta Streleckiene ◽  
Jurgita Skieceviciene ◽  
Marcis Leja ◽  
Alexander Link ◽  
...  

Background & Aims: Previous genome-wide association studies showed that genetic polymorphisms in toll-like receptor 1 (TLR1) and protein kinase AMP-activated alpha 1 catalytic subunit (PRKAA1) genes were associated with gastric cancer (GC) or increased Helicobacter pylori (H. pylori) infection susceptibility. The aim of this study was to evaluate the association between TLR1 and PRKAA1 genes polymorphisms and H.pylori infection, atrophic gastritis (AG) or GC in the European population.Methods: Single-nucleotide polymorphisms (SNPs) were analysed in 511 controls, 340 AG patients and 327 GC patients. TLR1 C>T (rs4833095) and PRKAA1 C>T (rs13361707) were genotyped by the real-time polymerase chain reaction. H. pylori status was determined by testing for anti-H. pylori IgG antibodies in the serum.Results: The study included 697 (59.2%) H. pylori positive and 481 (40.8%) H. pylori negative cases. We observed similar distribution of TLR1 and PRKAA1 alleles and genotypes in H. pylori positive and negative cases. TLR1 and PRKAA1 SNPs were not linked with the risk of AG. TC genotype of TLR1 gene was more prevalent in GC patients compared to the control group (29.7% and 22.3% respectively, p=0.002). Carriers of TC genotype had a higher risk of GC (aOR=1.89, 95% CI: 1.26–2.83, p=0.002). A similar association was observed in a dominant inheritance model for TLR1 gene SNP, where comparison of CC+TC vs. TT genotypes showed an increased risk of GC (aOR=1.86, 95% CI: 1.26–2.75, p=0.002). No association between genetic polymorphism in PRKAA1 gene and GC was observed.Conclusions: TLR1 rs4833095 SNP was associated with an increased risk of GC in a European population, while PRKAA1 rs13361707 genetic variant was not linked with GC. Both genetic polymorphisms were not associated with H. pylori infection susceptibility or the risk of AG.


2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Michelle L. Wright ◽  
Jennifer M. Fettweis ◽  
Lindon J. Eaves ◽  
Judy L. Silberg ◽  
Michael C. Neale ◽  
...  

AbstractThe diversity and dominant bacterial taxa in the vagina are reported to be influenced by multiple intrinsic and extrinsic factors, including but not limited to pregnancy, contraceptive use, pathogenic states, socioeconomic status, and ancestry. However, the extent to which host genetic factors influence variation in the vaginal microbiota is unclear. We used a biometrical genetic approach to determine whether host genetic factors contribute to inter-individual differences in taxa from a sample of 332 twins who self-identified as being of African (44 pairs) or European ancestry (122 pairs). Lactobacillus crispatus, a major determinant of vaginal health, was identified as heritable among European American women (narrow-sense heritability = 34.7%, P-value = 0.018). Heritability of L. crispatus is consistent with the reduced prevalence of adverse reproductive disorders, including bacterial vaginosis and preterm birth, among women of European ancestry.


2004 ◽  
Vol 10 (1) ◽  
pp. 1-6 ◽  
Author(s):  
Jeymohan Joseph ◽  
Toby Behar

2012 ◽  
Vol 171 (24) ◽  
pp. 624.2-624 ◽  
Author(s):  
R. A. Scholey ◽  
R. W. Blowey ◽  
R. D. Murray ◽  
R. F. Smith ◽  
J. Cameron ◽  
...  

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