Phaseolus vulgaris is nodulated in northern Spain by Rhizobium leguminosarum strains harboring two nodC alleles present in American Rhizobium etli strains: biogeographical and evolutionary implications

2010 ◽  
Vol 56 (8) ◽  
pp. 657-666 ◽  
Author(s):  
Paula García-Fraile ◽  
Daniel Mulas-García ◽  
Alvaro Peix ◽  
Raúl Rivas ◽  
Fernando González-Andrés ◽  
...  

In this study a collection of rhizobial strains were isolated from effective nodules of Phaseolus vulgaris in a wide region of northern Spain, which is the major producer region of this legume in Spain. The analysis of their core genes, rrs, atpD, and recA, and the 16S–23S intergenic spacer showed that all isolates belong to the phylogenetic group of Rhizobium leguminosarum and some of them were identical to those of strains nodulating Vicia or Trifolium . None of the isolates was identified as Rhizobium etli ; however, all of them carry the nodC alleles α and γ harboured by American strains of this species. These alleles were also found in strains nodulating P. vulgaris in southern Spain identified as R. etli. These results suggest that R. etli was carried from America to Spain with common bean seeds, but that they could have found difficulties persisting in the soils of northern Spain, probably because of the climatic conditions. The symbiotic genes of this species could have been transferred, after the arrival of P. vulgaris, to strains of R. leguminosarum already present in northern Spanish soils.

1998 ◽  
Vol 64 (12) ◽  
pp. 5020-5022 ◽  
Author(s):  
Eduardo A. Robleto ◽  
James Borneman ◽  
Eric W. Triplett

ABSTRACT The effects of antibiotic production on rhizosphere microbial communities of field-grown Phaseolus vulgaris were assessed by using ribosomal intergenic spacer analysis. Inoculum strains ofRhizobium etli CE3 differing only in trifolitoxin production were used. Trifolitoxin production dramatically reduced the diversity of trifolitoxin-sensitive members of the α subdivision of the class Proteobacteria with little apparent effect on most microbes.


1997 ◽  
Vol 10 (2) ◽  
pp. 228-233 ◽  
Author(s):  
Eduardo A. Robleto ◽  
Alexandra J. Scupham ◽  
Eric W. Triplett

The effect of trifolitoxin (TFX) production by Rhizobium etli on rhizosphere colonization and competition for nodulation in soil conditions was determined. TFX is a potent peptide antibiotic made by Rhizobium leguminosarum bv. trifolii T24 that inhibits many α-proteobacteria (E. W. Triplett, B. T. Breil, and G. A. Splitter, Appl. Environ. Microbiol. 60:4163–4166, 1994). Seeds of Phaseolus vulgaris were inoculated with a TFX-sensitive reference strain and either of two isogenic strains that differ only in their ability to produce TFX. The pair of strains were inoculated at different ratios in sterile and nonsterile soil. The representation of the strains in the rhizosphere and nodules was determined at 96 h after inoculation and 3 weeks after planting, respectively. The TFX-producing strain was significantly more competitive for both phenotypes versus the TFX-sensitive strain, compared with the TFX-nonproducing strain versus the TFX-sensitive strain. These results show that nodule occupancy by inoculant strains, often displaced from the nodules by indigenous strains, can be increased by addition of the TFX production phenotype to R. etli in plants grown in either sterile or nonsterile soil. Also, this work shows the efficacy of the TFX system for the first time on a legume host with determinant nodules.


Genes ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 111 ◽  
Author(s):  
J. Peter W. Young ◽  
Sara Moeskjær ◽  
Alexey Afonin ◽  
Praveen Rahi ◽  
Marta Maluk ◽  
...  

Bacteria currently included in Rhizobium leguminosarum are too diverse to be considered a single species, so we can refer to this as a species complex (the Rlc). We have found 429 publicly available genome sequences that fall within the Rlc and these show that the Rlc is a distinct entity, well separated from other species in the genus. Its sister taxon is R. anhuiense. We constructed a phylogeny based on concatenated sequences of 120 universal (core) genes, and calculated pairwise average nucleotide identity (ANI) between all genomes. From these analyses, we concluded that the Rlc includes 18 distinct genospecies, plus 7 unique strains that are not placed in these genospecies. Each genospecies is separated by a distinct gap in ANI values, usually at approximately 96% ANI, implying that it is a ‘natural’ unit. Five of the genospecies include the type strains of named species: R. laguerreae, R. sophorae, R. ruizarguesonis, “R. indicum” and R. leguminosarum itself. The 16S ribosomal RNA sequence is remarkably diverse within the Rlc, but does not distinguish the genospecies. Partial sequences of housekeeping genes, which have frequently been used to characterize isolate collections, can mostly be assigned unambiguously to a genospecies, but alleles within a genospecies do not always form a clade, so single genes are not a reliable guide to the true phylogeny of the strains. We conclude that access to a large number of genome sequences is a powerful tool for characterizing the diversity of bacteria, and that taxonomic conclusions should be based on all available genome sequences, not just those of type strains.


1997 ◽  
Vol 43 (1) ◽  
pp. 1-8 ◽  
Author(s):  
M. Srinivasan ◽  
F. B. Holl ◽  
D. J. Petersen

The ability of Bacillus spp. to alter the nodulation of Phaseolus vulgaris by Rhizobium etli was assessed. The simultaneous presence of both Rhizobium etli TAL 182 and Bacillus megaterium S49 on plant roots during the early stages of plant growth was necessary for enhanced nodulation of Phaseolus vulgaris by the Rhizobium microsymbiont. Coinoculation with both bacterial species also facilitated heterologous nodulation of Rhizobium TAL 182 on Phaseolus acutifolius. These results are consistent with earlier reports of increased root hair proliferation and lateral root formation in response to coinoculation. Split-root experiments revealed that coinoculation partially suppressed host-controlled regulation of nodulation, implicating a plant interaction with the two bacterial species. Changes to the nodulation potential of R. etli due to coinoculation with Bacillus spp. demonstrate the potential for root-associated organisms other than rhizobia to alter the dynamics of the legume–Rhizobium symbiosis.Key words: Bacillus, nodulation enhancement, heterologous nodulation.


1998 ◽  
Vol 64 (9) ◽  
pp. 3520-3524 ◽  
Author(s):  
O. Mario Aguilar ◽  
María Verónica López ◽  
Pablo M. Riccillo ◽  
Ramón A. González ◽  
Marcela Pagano ◽  
...  

ABSTRACT A collection of rhizobial isolates from nodules of wild beans,Phaseolus vulgaris var. aborigineus, found growing in virgin lands in 17 geographically separate sites in northwest Argentina was characterized on the basis of host range, growth, hybridization to a nifH probe, analysis of genes coding for 16S rRNA (16S rDNA), DNA fingerprinting, and plasmid profiles. Nodules in field-collected wild bean plants were largely dominated by rhizobia carrying the 16S rDNA allele of Rhizobium etli. A similar prevalence of the R. etli allele was observed among rhizobia trapped from nearby soil. Intragroup diversity of wild bean isolates with either R. etli-like or Rhizobium leguminosarum bv. phaseoli-like alleles was generally found across northwest Argentina. The predominance of the R. etliallele suggests that in this center of origin of P. vulgaris the coevolution of Rhizobium spp. and primitive beans has resulted in this preferential symbiotic association.


Plant Disease ◽  
2005 ◽  
Vol 89 (9) ◽  
pp. 1015-1015 ◽  
Author(s):  
E. Landeras ◽  
P. García ◽  
Y. Fernández ◽  
M. Braña ◽  
O. Fernández-Alonso ◽  
...  

During the winter of 2003-2004, dieback symptoms were observed on Pinus radiata and P. pinaster in pine nurseries in Asturias (northern Spain). Small groups of affected seedlings appeared randomly distributed throughout the nurseries. The seedlings died rapidly, showing basal needle dieback, stem lesions, resin exudations, and wilting. Isolations from infected material onto potato dextrose agar (PDA) supplemented with 0.5 mg/ml of streptomycin sulfate and Komada's medium consistently yielded Fusarium sp. cultures. The isolates were transferred to PDA and Spezieller Nährstoffarmer agar and incubated at 25°C for 10 days with a 12-h photoperiod. The cultures were identified as Fusarium circinatum Nirenberg & O'Donnell (= Fusarium subglutinans Wollenweb. & Reinking), causal agent of pitch canker disease, on basis of the presence of polyphialides and characteristic sterile, coiled, hyphae (2). To further confirm their identity, a polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) based on histone H3 gene sequences (4) and a test based on the F. circinatum-specific primers, CIRC1A-CIRC4A, which amplifies a 360-bp DNA fragment of the intergenic spacer region of the nuclear ribosomal operon (3), were used. Results obtained with both techniques confirmed the morphological identification of the cultures. A representative culture has been placed in the Centraalbureau voor Schimmelcultures (CBS 117843). The pathogen was isolated only from seedlings of P. radiata and P. pinaster. Other species such as P. nigra, P. sylvestris, and Pseudotsuga menziesii, which were also grown in these nurseries, did not show symptoms. Pathogenicity was confirmed by inoculating 6- to 9-month-old P. radiata and P. pinaster seedlings. Small strips of bark (10 × 1 mm) were cut from the stems and similar sized pieces of PDA colonized by F. circinatum were placed in contact with the open wounds and covered with parafilm. Basal needle dieback was observed 10 days after inoculation that resulted in wilting of the seedlings. F. circinatum was reisolated from the affected stems fulfilling Koch's postulates. Later in the year, symptoms of pitch canker were also observed on 20-year-old P. radiata in one forest plantation in Cantabria (northern Spain). Infected branches and shoots of the trees exudated abundant resin, resulting in resinous cankers. The needles, distal to branch tip infections, wilt, fade to yellow then red, and fall from the tree. Affected trees showed noticeable crown dieback. The isolations from the cankers also yielded F. circinatum cultures that were identified as described above. Although a nonrefereed report appeared in 1998 (1), to our knowledge, this is the first report of F. circinatum on P. radiata and P. pinaster in Spain and in Europe. References: (1) L. D. Dwinell et al. Int. Congr. Plant Pathol. 7th. 3:9, 1998. (2) H. I. Nirenberg and K. O'Donnell. Mycologia 90:434, 1998. (3) W. Schweigkofler et al. Appl. Environ. Microbiol. 70:3512, 2004. (4) E. T. Steenkamp et al. Appl. Environ. Microbiol. 65:3401, 1999.


2021 ◽  
Author(s):  
Jagveer Singh ◽  
Vishal Sharma ◽  
Kuldeep Pandey ◽  
Shahnawaz Ahmed ◽  
Manveen Kaur ◽  
...  

Globally, citrus fruits are grown over an area of 11.42 million ha with 179.0 million tons production. China with 82.7 m tons production is the major producer of citrus fruits followed by Brazil (18.14 m tons) and India (10.53 m tons) (FAOSTAT, 2019). All commercially used scion and rootstock cultivars belong to the genus Citrus, except kumquats, Fortunella spp., and Poncirus trifoliata, which are used as rootstock only all over the world. Worldwide citrus cultivars divided into four, reasonably-well-defined horticultural groups: the Sweet oranges, the mandarins, the grapefruits and the pummelos and the common acid members. The true or ‘biological’ citrus, including species of Citrus (C. reticulata, C. maxima and C. medica), share certain characteristics, however, these are clearly differentiated according to the morpho- taxonomic traits. Hundreds of different citrus cultivars are available. Many varieties were chance finds from natural populations, and not the product of intentional breeding efforts. Other varieties in common use have originated from planned citrus hybridization and breeding efforts from worldwide. Most of the readers will be well acquainted with the cultivated types of Citrus scion and rootstocks. This chapter provides ripening season information for worldwide, farmers/gardeners have had success with citrus in many different regions of world where tropical/subtropical climatic conditions occur.


Author(s):  
Jan Hontelez ◽  
Rene Klein Lankhorst ◽  
Jan-Dirk Jansma ◽  
Evert Jacobsen ◽  
Rommert C. van den Bos ◽  
...  

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