Shifts in community composition provide a mechanism for maintenance of activity of soil yeasts in the presence of elevated copper levels

2003 ◽  
Vol 49 (7) ◽  
pp. 425-432 ◽  
Author(s):  
S Cornelissen ◽  
A Botha ◽  
W J Conradie ◽  
G M Wolfaardt

Soil dilution plates were prepared from different soil samples using a solid synthetic selective medium containing (i) glucose as carbon source, (ii) thymine as nitrogen source, (iii) vitamins, (iv) minerals, and (v) chloramphenicol as antibacterial agent. Using the Diazonium Blue B colour reaction, it was found that both ascomycetous and basidiomycetous yeasts were able to grow on this medium. Subsequently, the medium was used to enumerate yeasts in soil microcosms prepared from four different soil samples, which were experimentally treated with the fungicide copper oxychloride, resulting in copper (Cu) concentrations of up to 1000 ppm. The selective medium supplemented with 32 ppm of Cu was used to enumerate Cu-resistant yeasts in the microcosms. The results showed that the addition of Cu at concentrations [Formula: see text]~1000 ppm did not have a significant effect on total number of yeasts in the soil. Furthermore, it was found that Cu-resistant yeasts were present in all the soil samples, regardless of the amount of Cu that the soil was challenged with. At the end of the incubation period, yeasts in the microcosms with zero and ~1000 ppm of additional Cu were enumerated, isolated, and identified with sequence analyses of the D1/D2 600–650 bp region of the large subunit of ribosomal DNA. Hymenomycetous species dominated in the control soil, while higher numbers of the urediniomycetous species were found in the soil that received Cu. These observations suggest that urediniomycetous yeasts may play an important role in re-establishing overall microbial activity in soils, following perturbations, such as the addition of Cu-based fungicides.Key words: copper, heavy metals, soil, yeasts.

2015 ◽  
Vol 754-755 ◽  
pp. 1054-1058
Author(s):  
Nor’izzah Zainuddin ◽  
Khadijah Hanim Abd Rahman ◽  
Abdul Razak Shaari ◽  
Siti Jamilah Hanim Mohd Yusof

Alkaliphilic cellulases-producer fungi were isolated from soil of limestone areas in Perlis. The potential strain was isolated by soil dilution plate method on enriched selective medium using CMC as substrate at different pH levels. Eleven isolates of different morphological colonies were screened using the hydrolysis capacity test by Gram’s iodine. Out of eleven colonies, five showed positive results as the hydrolysis zone formed. BK1 showed the highest hydrolysis capacity among all sample strains for every pH levels. Eventually, four strains were selected to be further explored as cellulolytic fungi for the production of alkaline cellulase in the future.


2007 ◽  
Vol 55 (3) ◽  
pp. 355-362
Author(s):  
M. Rollán ◽  
C. Mónaco ◽  
G. Lampugnani ◽  
N. Arteta ◽  
D. Bayo ◽  
...  

Trichoderma harzianum is a potential biocontrol agent against Sclerotinia sclerotiorum in soybean. Information is needed on the compatibility of this biocontrol agent and the post-emergent herbicides used in soybean cropping.Haloxyfop R Methyl (EC 10.4%), Glyphosate (SL 48%), Imazamox (WG 70%) and Imazethapyr (SL 10%) were evaluated for their effects on the mycelial growth of T. harzianum on in vitro agar plates. Glyphosate (2000 ppm), Imazethapyr (500 and 250 ppm) and Haloxyfop R Methyl (1000, 500 and 100 ppm) reduced the mycelial growth of T. harzianum . Imazamox had no effect at any concentration.Subsequently, all the herbicides were assessed for their effect on soil populations of T. harzianum . Greenhouse assays conducted with non-sterile soil inoculated with T. harzianum and a specific herbicide were sampled before pesticide application and after 30 days. The number of colony forming units per gram of soil (c.f.u./g of soil) was evaluated with a soil dilution technique using Trichoderma selective medium (TSM). No detrimental effect was revealed.


2016 ◽  
Vol 82 (24) ◽  
pp. 7217-7226 ◽  
Author(s):  
D. Lee Taylor ◽  
William A. Walters ◽  
Niall J. Lennon ◽  
James Bochicchio ◽  
Andrew Krohn ◽  
...  

ABSTRACTWhile high-throughput sequencing methods are revolutionizing fungal ecology, recovering accurate estimates of species richness and abundance has proven elusive. We sought to design internal transcribed spacer (ITS) primers and an Illumina protocol that would maximize coverage of the kingdom Fungi while minimizing nontarget eukaryotes. We inspected alignments of the 5.8S and large subunit (LSU) ribosomal genes and evaluated potential primers using PrimerProspector. We tested the resulting primers using tiered-abundance mock communities and five previously characterized soil samples. We recovered operational taxonomic units (OTUs) belonging to all 8 members in both mock communities, despite DNA abundances spanning 3 orders of magnitude. The expected and observed read counts were strongly correlated (r= 0.94 to 0.97). However, several taxa were consistently over- or underrepresented, likely due to variation in rRNA gene copy numbers. The Illumina data resulted in clustering of soil samples identical to that obtained with Sanger sequence clone library data using different primers. Furthermore, the two methods produced distance matrices with a Mantel correlation of 0.92. Nonfungal sequences comprised less than 0.5% of the soil data set, with most attributable to vascular plants. Our results suggest that high-throughput methods can produce fairly accurate estimates of fungal abundances in complex communities. Further improvements might be achieved through corrections for rRNA copy number and utilization of standardized mock communities.IMPORTANCEFungi play numerous important roles in the environment. Improvements in sequencing methods are providing revolutionary insights into fungal biodiversity, yet accurate estimates of the number of fungal species (i.e., richness) and their relative abundances in an environmental sample (e.g., soil, roots, water, etc.) remain difficult to obtain. We present improved methods for high-throughput Illumina sequencing of the species-diagnostic fungal ribosomal marker gene that improve the accuracy of richness and abundance estimates. The improvements include new PCR primers and library preparation, validation using a known mock community, and bioinformatic parameter tuning.


Author(s):  
Seo Hee Lee ◽  
Thuong T. T. Nguyen ◽  
Hyang Burm Lee

The order Mucorales, the largest in number of species within the Mucoromycotina, comprises typically fast-growing saprotrophic fungi. During a study of the fungal diversity of undiscovered taxa in Korea, two novel mucoralean strains, CNUFC-GWD3-9 and CNUFC-EGF1-4, were isolated from specific habitats including freshwater and fecal samples, respectively, in Korea. On the basis of their morphological characteristics and sequence analyses of internal transcribed spacer (ITS) and large subunit (LSU) of 28S ribosomal DNA regions, the CNUFC-GWD3-9 and CNUFC-EGF1-4 isolates were confirmed to be Gilbertella persicaria and Pilobolus crystallinus, respectively. It is ecologically, pathologically and mycologically significant to find such rare zygomycetous fungi in such specific habitats. 


2015 ◽  
Vol 67 (4) ◽  
pp. 1173-1183
Author(s):  
Salih Karabörklü ◽  
Abdurrahman Ayvaz ◽  
Semih Yilmaz ◽  
Ugur Azizoglu

Free-living soil nematodes have successfully adapted world-wide to nearly all soil types from the highest to the lowest of elevations. In the current study, nematodes were isolated from soil samples and fungi associated with these free-living soil nematodes were determined. Large subunit (LSU) rDNAs of nematode-associated fungi were amplified and sequenced to construct phylogenetic trees. Nematode-associated fungi were observed in six nematode strains belonging to Acrobeloides, Steinernema and Cephalobus genera in different habitats. Malassezia and Cladosporium fungal strains indicated an association with Acrobeloides and Cephalobus nematodes, while Alternaria strains demonstrated an association with the Steinernema strain. Interactions between fungi and free-living nematodes in soil are discussed. We suggest that nematodes act as vectors for fungi.


2021 ◽  
Vol 12 (3) ◽  
pp. 1902-1907
Author(s):  
Sanchita Choubey ◽  
Sneha Vittal Chapade ◽  
Supriya Ashok Garud

A pigment is a substance that is substantially used in different industries that come in a wide range of coloration and few of which are soluble in water. Bacterial pigments have many applications in the modern day life. Some microorganisms have the characteristics feature to produce pigments which may additionally beneficial us in identification. Bacterial pigments have larger compatibility and greater biodegradability with the environment. Nontoxic nature of pigment produced with the aid of a huge range of microorganisms make them ecofriendly for use in foodstuff, dye, cosmetics, pharmacy and different industrial purposes. Pigments of bacteria provide various advantages compared to synthetic dyes. They are biodegradable in nature, easy to extract, easily available, cheaper substrates needed. The pigment produced by the bacteria can be used as anticancer agents, antibacterial agent and anti-proliferative agents. The object of the existing find out about was once to isolated  pigment producing microorganism from water and soil samples and explores their properties. Based on their morphological and biochemical characteristics, they have been recognized as Micrococcus and Arthrobacter. The pigment isolated from bacterial spp. is used for the antimicrobial activity, anti-oxidant recreation and for optimization of pH, temperature and NaCl. It was once concluded that water and soil have various microorganisms and they have the capacity of producing pigments.


1977 ◽  
Vol 23 (6) ◽  
pp. 680-683 ◽  
Author(s):  
Gary J. Griffin

Reduced development of fusaria and other undesired fungi, and improved recognition of Cylindrocladium crotalariae colonies on soil-dilution plates were accomplished by supplementing a previously used medium (sucrose–TBZ medium) with three quaternary ammonium compounds, replacing peptone with tyrosine, and increasing the concentration of sucrose to yield a water potential of −10 bars. These changes eliminated the need to treat soil with NaClO to control undesired fungi. The new medium, designated sucrose–QT medium, allowed increased recovery of C. crotalariae microsclerotia from all 16 naturally infested soils tested.


2013 ◽  
Vol 63 (Pt_8) ◽  
pp. 3086-3090 ◽  
Author(s):  
Serge Casaregola ◽  
Noémie Jacques ◽  
Christelle Louis-Mondesir ◽  
Monika Coton ◽  
Emmanuel Coton

A yeast strain was isolated from olive brines in a fermented black olive and olive oil manufacturing plant in the town of Nyons (France). On the basis of domains 1 and 2 (D1/D2) large subunit (LSU) rRNA gene and internal transcribed spacer (ITS) region sequence analyses, the strain CLIB 1303T was found to be closely related, but clearly distinct, from the three existing species of the genus Citeromyces: Citeromyces matritensis, Citeromyces siamensis and Citeromyces haiwaiiensis. Strain CLIB 1303T exhibited 6 bp, 7 bp and 12 bp divergences in the D1/D2 LSU rRNA gene with C. siamensis, C. matritensis and C. hawaiiensis, respectively. ITS region divergence amounted to more than 8 %, 4 % and 4.5 % with C. siamensis, C. matritensis and C. hawaiiensis, respectively, in addition to several indels. Like C. matritensis and C. siamensis strains, strain CLIB 1303T was shown to be halotolerant and osmotolerant. Phenotypically, strain CLIB 1303T can be distinguished from other species of the genus Citeromyces by its inability to assimilate trehalose. The strain CLIB 1303T ( = CBS 12700T) was assigned to a novel species, Citeromyces nyonsensis sp. nov.


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