Kinetic equations and mechanisms for activation and inhibition in enzyme systems

1983 ◽  
Vol 61 (11) ◽  
pp. 1208-1218 ◽  
Author(s):  
Keith J. Laidler

The rates of enzyme reactions that are activated or inhibited by added modifiers can in some cases be expressed as a rational function of the first degree, v = (α0 + α1[Q])/(β0 + β1[Q] where [Q] is the concentration of the modifier and α0, α1, β0, and β1 are functions of rate constants and sometimes of the enzyme and substrate concentrations; the behaviour is then said to be linear. Three simple mechanisms that give rise to linear kinetics are examined, and the conditions under which there is activation or inhibition are determined. Sometimes there is a transition from activation to inhibition as the substrate concentration is varied. Definitions of competitive, uncompetitive, and noncompetitive activation are suggested, by analogy with the generally accepted definitions for inhibition. In second-degree activation or inhibition the rate can be expressed as the ratio of two quadratic polynomials with positive coefficients. Ten patterns are then possible for plots of v against [Q], and they may be classified with respect to (i) overall activation or inhibition, (ii) initial (at [Q] → 0) activation or inhibition, (iii) terminal (at [Q] → ∞) activation or inhibition, and (iv) whether there is an initial inflexion. The general case of an n:n rational function is also discussed.

1990 ◽  
Vol 270 (3) ◽  
pp. 825-828 ◽  
Author(s):  
R Varón ◽  
B H Havsteen ◽  
M García ◽  
F García Cánovas ◽  
J Tudela

A versatile computer program with an easy input method has been developed for the construction of the terms in kinetic equations of enzyme reactions. It allows the expression of the time-dependence of the concentrations of all of the species involved as functions of the kinetic parameters. The mathematical theory used in this paper, the program and examples of its use have been deposited as Supplementary Publication SUP 50159 (41 pages) at the British Library Document Supply Centre, Boston Spa, Wetherby, West Yorkshire LS23 7BQ, U.K., from whom copies can be obtained on the terms indicated in Biochem. J. (1990) 265, 5.


1988 ◽  
Vol 20 (11-12) ◽  
pp. 117-123 ◽  
Author(s):  
D. van der Kooij ◽  
W. A. M. Hijnen

A K.pneumoniae strain, isolated from a water treatment system, was tested in growth measurements for its ability to multiply at substrate concentrations of a few micrograms per liter. The organism multiplied on mixtures of carbohydrates and amino acids at a substrate concentration of 1 µg of C of each compound per liter. Tests with individual compounds revealed that especially carbohydrates were utilized at low concentrations. The Ks values obtained for maltose and maltopentaose were 53 µg of C/l and 114 µg of C per liter, respectively. The significance of the growth of K.pneumoniae at low substrate concentrations is discussed.


1979 ◽  
Vol 179 (3) ◽  
pp. 697-700 ◽  
Author(s):  
N Gains

By using a standard graphical method values of Km and V may be found that are independent of the conditions and assumptions that the total substrate concentration approximates to its free concentration and that Km is much larger than the enzyme concentration. The procedure is also applicable to the determination of equilibrium binding parameters of a ligand to a macromolecule.


2020 ◽  
Vol 8 (2) ◽  
pp. 109-115
Author(s):  
Folasade M. Olajuyigbe ◽  
Cornelius O. Fatokun ◽  
Oluwatosin I. Oni

Background: One of the critical challenges of cost-effective bioethanol production from lignocellulosic biomass is the decreasing yield of reducing sugars caused by increasing substrate loading. Hence, it is crucial to determine the best substrate concentration for efficient saccharification of lignocellulosic wastes. Objective: This paper reports the saccharification of corn cob by two lignocellulolytic fungi (Fusarium oxysporum and Sporothrix carnis) and concurrent production of lignocellulolytic enzymes at varying substrate concentrations. Methods: F. oxysporum and S. carnis were cultivated on corn cob based media at 30°C and 160 rpm for 144 h. The lignocellulosic composition of corn cob was determined. Saccharification of varying concentrations of substrate was determined by evaluating the release of reducing sugar while the production of cellulase and xylanase was monitored. Results: Cellulose, hemicellulose and lignin contents of corn cob were 37.8±1.56%, 42.2±1.68% and 12.7±1.23%, respectively. Yields of reducing sugar by F. oxysporum and S. carnis were 5.03 µmol/mL and 6.16 µmol/mL; and 6.26 µmol/mL and 6.58 μmol/mL at 10.0 and 25.0% substrate concentration, respectively. The production of cellulase and xylanase was exponential as corn cob concentration increased from 0.5% to 10.0% yielding 586.93 U/mL and 1559.18 U/mL from F. oxysporum, with 590.7 U/mL and 1573.95 U/mL from S. carnis, respectively. Conclusion: The study shows that the most efficient saccharification of corn cob by F. oxysporum and S. carnis was achieved at 10.0% substrate concentration. This suggests that two separate saccharification processes at this concentration will result in higher yields of enzyme and reducing sugars than a single process involving higher concentration.


1984 ◽  
Vol 30 (1) ◽  
pp. 143-144
Author(s):  
J C Hafkenscheid ◽  
C M van Dijk

Abstract We investigated the mechanism by which the three most commonly measured enzymes in erythrocytes are activated by their respective coenzymes by determining the catalytic activity concentrations of transketolase (EC 2.2.1.1), aspartate aminotransferase (EC 2.6.1.1), and glutathione reductase (EC 1.6.4.2) in relation to various substrate concentrations. We conclude that the underlying mechanisms by which the enzymes are activated are not the same.


1959 ◽  
Vol 37 (8) ◽  
pp. 1268-1271 ◽  
Author(s):  
Richard M. Krupka ◽  
Keith J. Laidler

Steady-state equations are worked out for the case of a competitive inhibitor that is present in concentrations comparable with that of the enzyme; allowance is made for the inhibitor attached to the enzyme. Two cases are considered: in case 1 the enzyme and inhibitor form a simple addition complex, while in case 2 a molecule is split off. Methods of graphical analysis of rate data are described.


1986 ◽  
Vol 64 (7) ◽  
pp. 1408-1414 ◽  
Author(s):  
John M. Roscoe

The reactions of O(3P) with 2-propanone, 2-butanone, and 3-pentanone have been studied kinetically as a function of temperature and substrate concentration. The absolute rate constants for these reactions in the gas phase, in the units M−1 s−1, obey the following relations.[Formula: see text]The activation energies for these reactions are comparable to those for the reactions of O(3P) with alcohols, but the preexponential factors for the reactions of O(3P) with these ketones are significantly smaller than those for the analogous reactions with alcohols. The available data indicate that the reactivity of O(3P) toward ketones shows a variation with polar effects of substituents which is similar to that found for the reactions of OH with ketones.


Catalysts ◽  
2019 ◽  
Vol 9 (12) ◽  
pp. 997 ◽  
Author(s):  
Katja F. Hellendahl ◽  
Sarah Kamel ◽  
Albane Wetterwald ◽  
Peter Neubauer ◽  
Anke Wagner

Natural ribonucleoside-5’-monophosphates are building blocks for nucleic acids which are used for a number of purposes, including food additives. Their analogues, additionally, are used in pharmaceutical applications. Fludarabine-5´-monophosphate, for example, is effective in treating hematological malignancies. To date, ribonucleoside-5’-monophosphates are mainly produced by chemical synthesis, but the inherent drawbacks of this approach have led to the development of enzymatic synthesis routes. In this study, we evaluated the potential of human deoxycytidine kinase (HsdCK) as suitable biocatalyst for the synthesis of natural and modified ribonucleoside-5’-monophosphates from their corresponding nucleosides. Human dCK was heterologously expressed in E. coli and immobilized onto Nickel-nitrilotriacetic acid (Ni-NTA) superflow. A screening of the substrate spectrum of soluble and immobilized biocatalyst revealed that HsdCK accepts a wide range of natural and modified nucleosides, except for thymidine and uridine derivatives. Upon optimization of the reaction conditions, HsdCK was used for the synthesis of fludarabine-5´-monophosphate using increasing substrate concentrations. While the soluble biocatalyst revealed highest product formation with the lowest substrate concentration of 0.3 mM, the product yield increased with increasing substrate concentrations in the presence of the immobilized HsdCK. Hence, the application of immobilized HsdCK is advantageous upon using high substrate concentration which is relevant in industrial applications.


1968 ◽  
Vol 108 (4) ◽  
pp. 687-692 ◽  
Author(s):  
J W Ryan ◽  
J. K. McKenzie

1. Rabbit plasma enzymes that degrade angiotensin I are inhibited completely by the combination of 2,3-dimercaptopropan-1-ol (10mm), EDTA (10mm) and chlorhexidine gluconate (0·005%, w/v). These compounds do not modify the reaction of renin with renin substrate and are termed the selective inhibitors. 2. The renin substrate concentration of plasma can be measured as angiotensin I content by incubating plasma plus the selective inhibitors with renin for a time sufficient to allow complete utilization of renin substrate. 3. This reaction obeys first-order kinetics to substrate concentrations of at least 1000ng. of angiotensin I content/ml. In general, the renin substrate concentrations of normal rabbit plasmas are less than 1000ng. of angiotensin I content/ml. Thus the time required for the complete release of angiotensin I from normal plasma is inversely related to renin activity and is independent of renin substrate concentration. 4. A method for the assay of renin substrate, taking these reaction kinetics into account, is presented.


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