Characterization of bacteriophage CP1, an organic solvent sensitive phage associated with Pseudomonas cepacia

1978 ◽  
Vol 24 (11) ◽  
pp. 1404-1412 ◽  
Author(s):  
R. L. Cihlar ◽  
T. G. Lessie ◽  
S. C. Holt

Pseudomonas cepacia strain 249 has been found to harbor an organic solvent sensitive phage, CP1, which is active on other P. cepacia strains. The efficiency of plating of CP1 was dependent upon the strain on which it was propagated and the strain used as indicator, implying the operation of host restriction and modification systems in certain of the strains. Strain 383 which was used routinely for propagation of CP1 appears to lack such systems. To obtain high-titer lysates it was important to add EDTA to the infected cultures at the onset of lysis to block attachment of phage particles to cell debris. CP1 possesses a distinct head (55 nm in diameter) and a broad contractile tail (15 × 145 nm). Fluorescent staining of phage preparations with acridine orange indicated that CP1 contains double-stranded DNA. CP1 particles contained about 5 × 10−17 g each of protein and DNA for a total particle weight of 10−16 g. The apparent molecular weight of CP1 DNA estimated from its sedimentation behavior and the particle content of DNA was about 3 × 107. Thermal-denaturation studies indicated that the G + C content of CP1 DNA (65%) was lower than that of DNA of its P. cepacia host (71% G + C). The mechanism of inactivation of CP1 by chloroform appears to be related to tail contraction caused by this agent. An atypical reverse contraction of the tail sheath was noted in about 45% of the inactivated particles. No phospholipid was detected in purified preparations of CP1 (<4 × 10−19 g/PFU). The results suggest that inactivation of CP1 by organic solvents involves alteration of a component (presumably a protein) of the phage tail.

2020 ◽  
Vol 21 (9) ◽  
pp. 3119 ◽  
Author(s):  
Jeroen Wagemans ◽  
Jessica Tsonos ◽  
Dominique Holtappels ◽  
Kiandro Fortuna ◽  
Jean-Pierre Hernalsteens ◽  
...  

The phAPEC6 genome encodes 551 predicted gene products, with the vast majority (83%) of unknown function. Of these, 62 have been identified as virion-associated proteins by mass spectrometry (ESI-MS/MS), including the major capsid protein (Gp225; present in 1620 copies), which shows a HK97 capsid protein-based fold. Cryo-electron microscopy experiments showed that the 350-kbp DNA molecule of Escherichia coli virus phAPEC6 is packaged in at least 15 concentric layers in the phage capsid. A capsid inner body rod is also present, measuring about 91 nm by 18 nm and oriented along the portal axis. In the phAPEC6 contractile tail, 25 hexameric stacked rings can be distinguished, built of the identified tail sheath protein (Gp277). Cryo-EM reconstruction reveals the base of the unique hairy fibers observed during an initial transmission electron microscopy (TEM) analysis. These very unusual filaments are ordered at three annular positions along the contractile sheath, as well as around the capsid, and may be involved in host interaction.


Biochemistry ◽  
1964 ◽  
Vol 3 (4) ◽  
pp. 511-517 ◽  
Author(s):  
Nilima Sarkar ◽  
Satyapriya Sarkar ◽  
L. M. Kozloff
Keyword(s):  

2016 ◽  
Vol 113 (33) ◽  
pp. 9351-9356 ◽  
Author(s):  
Jiří Nováček ◽  
Marta Šiborová ◽  
Martin Benešík ◽  
Roman Pantůček ◽  
Jiří Doškař ◽  
...  

Bacteriophages from the family Myoviridae use double-layered contractile tails to infect bacteria. Contraction of the tail sheath enables the tail tube to penetrate through the bacterial cell wall and serve as a channel for the transport of the phage genome into the cytoplasm. However, the mechanisms controlling the tail contraction and genome release of phages with “double-layered” baseplates were unknown. We used cryo-electron microscopy to show that the binding of the Twort-like phage phi812 to the Staphylococcus aureus cell wall requires a 210° rotation of the heterohexameric receptor-binding and tripod protein complexes within its baseplate about an axis perpendicular to the sixfold axis of the tail. This rotation reorients the receptor-binding proteins to point away from the phage head, and also results in disruption of the interaction of the tripod proteins with the tail sheath, hence triggering its contraction. However, the tail sheath contraction of Myoviridae phages is not sufficient to induce genome ejection. We show that the end of the phi812 double-stranded DNA genome is bound to one protein subunit from a connector complex that also forms an interface between the phage head and tail. The tail sheath contraction induces conformational changes of the neck and connector that result in disruption of the DNA binding. The genome penetrates into the neck, but is stopped at a bottleneck before the tail tube. A subsequent structural change of the tail tube induced by its interaction with the S. aureus cell is required for the genome’s release.


1986 ◽  
Vol 163 (5) ◽  
pp. 1267-1280 ◽  
Author(s):  
E K Bayne ◽  
E A Rupp ◽  
G Limjuco ◽  
J Chin ◽  
J A Schmidt

We have used synthetic peptides coupled to KLH to raise high titer antisera to human IL-1 beta, and in the present report show the usefulness of these sera for immunocytochemical analyses of IL-1 production. Using indirect immunofluorescence, we have been able to specifically identify IL-1 within human monocytes and to monitor its accumulation with time. After indirect immunofluorescent staining of LPS- and PHA-stimulated mononuclear cell cultures, intense cytoplasmic fluorescence was observed in 93% of the monocytes, but not in lymphocytes or platelets present in the same preparation. Unstimulated monocytes did not contain immunocytochemically detectable IL-1. When put into culture, however, some of the otherwise unstimulated monocytes subsequently showed a transient accumulation of intracellular IL-1. Monocytes cultured in the presence of LPS and PHA exhibited detectable fluorescence after 2.5 h, and the fluorescent intensity of these cells continued to increase over the course of 21 h. Fluorescent staining was abolished by preincubation of the sera with relevant but not irrelevant peptide, and while preimmune or anti-KLH serum produced no staining, antisera against either the amino terminus or an internal region of IL-1 beta produced identical staining patterns. Immunoblot analyses of lysates from stimulated monocytes showed that the antisera against IL-1 recognize a single intracellular species with an apparent molecular weight (33 kD) similar to that predicted for IL-1 precursor from the nucleotide sequence of IL-1 cDNA. The ability to specifically identify and immunocytochemically localize IL-1 within producing cells should prove extremely useful for studying the in situ production of IL-1 in immune-based and inflammatory diseases.


1975 ◽  
Vol 21 (4) ◽  
pp. 571-574 ◽  
Author(s):  
Hans-W. Ackermann ◽  
Teresa Caprioli ◽  
Shanti S. Kasatiya

Phage VD13 possesses a large, elongated head and a long, non-contractile tail. It is active on group D streptococci and contains double-stranded DNA. The phage produces several rare kinds of head malformations, notably polymorphic mottled structures and giant heads which probably contain DNA.


2006 ◽  
Vol 188 (7) ◽  
pp. 2568-2577 ◽  
Author(s):  
Revathi Govind ◽  
Joe A. Fralick ◽  
Rial D. Rolfe

ABSTRACT In this study, we have isolated a temperate phage (ΦCD119) from a pathogenic Clostridium difficile strain and sequenced and annotated its genome. This virus has an icosahedral capsid and a contractile tail covered by a sheath and contains a double-stranded DNA genome. It belongs to the Myoviridae family of the tailed phages and the order Caudovirales. The genome was circularly permuted, with no physical ends detected by sequencing or restriction enzyme digestion analysis, and lacked a cos site. The DNA sequence of this phage consists of 53,325 bp, which carries 79 putative open reading frames (ORFs). A function could be assigned to 23 putative gene products, based upon bioinformatic analyses. The ΦCD119 genome is organized in a modular format, which includes modules for lysogeny, DNA replication, DNA packaging, structural proteins, and host cell lysis. The ΦCD119 attachment site attP lies in a noncoding region close to the putative integrase (int) gene. We have identified the phage integration site on the C. difficile chromosome (attB) located in a noncoding region just upstream of gene gltP, which encodes a carrier protein for glutamate and aspartate. This genetic analysis represents the first complete DNA sequence and annotation of a C. difficile phage.


2006 ◽  
Vol 72 (5) ◽  
pp. 3154-3160 ◽  
Author(s):  
Susana Campoy ◽  
Jes�s Aranda ◽  
Gerard �lvarez ◽  
Jordi Barb� ◽  
Montserrat Llagostera

ABSTRACT A temperate bacteriophage (F108) has been isolated through mitomycin C induction of a Pasteurella multocida serogroup A strain. F108 has a typical morphology of the family Myoviridae, presenting a hexagonal head and a long contractile tail. F108 is able to infect all P. multocida serogroup A strains tested but not those belonging to other serotypes. Bacteriophage F108, the first P. multocida phage sequenced so far, presents a 30,505-bp double-stranded DNA genome with cohesive ends (CTTCCTCCCC cos site). The F108 genome shows the highest homology with those of Haemophilus influenzae HP1 and HP2 phages. Furthermore, an F108 prophage attachment site in the P. multocida chromosome has been established to be inside a gene encoding tRNALeu. By using several chromosomal markers that are spread along the P. multocida chromosome, it has been demonstrated that F108 is able to perform generalized transduction. This fact, together with the absence of pathogenic genes in the F108 genome, makes this bacteriophage a valuable tool for P. multocida genetic manipulation.


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