Comparative transcriptome profiling reveals the reprogramming of gene networks under arsenic stress in Indian mustard

Genome ◽  
2019 ◽  
Vol 62 (12) ◽  
pp. 833-847
Author(s):  
Sapna Thakur ◽  
Shruti Choudhary ◽  
Preeti Dubey ◽  
Pankaj Bhardwaj
Keyword(s):  
Signal Transduction ◽  
Gene Networks ◽  
Large Scale ◽  
Indian Mustard ◽  
Transcriptome Profiling ◽  
Dry Weight ◽  
Control Measures ◽  
Glutathione Metabolism ◽  
Adverse Health Effects ◽  
Arsenic Accumulation

Arsenic is a widespread toxic metalloid that is classified as a class I carcinogen known to cause adverse health effects in humans. In the present study, we investigated arsenic accumulation potential and comparative gene expression in Indian mustard. The amount of arsenic accumulated in shoots varied in the range of 15.99–1138.70 mg/kg on a dry weight basis among five cultivars. Comparative expression analysis revealed 10 870 significantly differentially expressed genes mostly belonging to response to stress, metabolic processes, signal transduction, transporter activity, and transcription regulator activity to be up-regulated, while most of the genes involved in photosynthesis, developmental processes, and cell growth were found to be down-regulated in arsenic-treated tissues. Further, pathway analysis using the KEGG Automated Annotation server (KAAS) revealed a large-scale reprogramming of genes involved in genetic and environmental information processing pathways. Top pathways with maximum KEGG orthology hits included carbon metabolism (2.5%), biosynthesis of amino acids (2.1%), plant hormone signal transduction (1.4%), and glutathione metabolism (0.6%). A transcriptomic investigation to understand the arsenic accumulation and detoxification in Indian mustard will not only help to improve its phytoremediation efficiency but also add to the control measures required to check bioaccumulation of arsenic in the food chain.

scholarly journals Analysis of Leaf Trait and Differentially Expressed Genes of Leaf Development in Eucommia ulmoides Oliver after Ultraviolet-B (UV-B) Radiation

2020 ◽  
Author(s):  
Li Dewen ◽  
Liu Ying ◽  
Du Dandan ◽  
Zu Yuangang ◽  
Tang Zhonghua ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Differentially Expressed Genes ◽  
North China ◽  
Transcriptome Profiling ◽  
Dry Weight ◽  
Ultraviolet B ◽  
Differentially Expressed ◽  
Signal Pathways ◽  
Eucommia Ulmoides ◽  
Leaf Trait

Abstract Background Eucommia ulmoides Oliver (EUO) has a great medicinal value in China. The using leaf model of Eucommia planting (ULMEP) is a promising approach to resolve the shortage of EUO resources. We focused on leaf responses and differentially expressed genes (DEGs) for transcriptome profiling after ultraviolet-B radiation (UV-B) in the east-north China. ResultsThe leaf traits were significantly affected after UV-B treatment, and the leaf area, leaf thickness and total leaf fresh/dry weight significantly increased (p<0.05). Anatomical results showed that cells from the leaf epidermal and palisade tissue were larger than those of control. Two transcriptome databases were assembled and integrated, the transcriptome databases comparative analysis revealed 1,826 up-regulated and 1,872 down-regulated genes. Among them, the up-regulated unigenes were mainly participated in Signal transduction mechanisms, and Cell wall/membrane biogenesis by the KOG database, and up-regulated genes were analyzed in plant hormone signal transduction and phenylpropanoid metabolic pathways by KEGG pathway. Furthermore, randomly 10 candidate unigenes expression were examined using RT-qPCR, the two libraries exhibited differential expression and were same as those obtained by sequencing. Conclusions This study was helpful to clarify the cause of leaf enlargement after UV-B treatment, the differentially expressed genes (DEGs) from plant auxin and phenylpropanoid biosynthesis signal pathways were focused on after UV-B treatment. This study provided a valuable reference for the ULMEP in the east-north China.

Assessment of quality of life in patients with the effects of transient ischemic stroke

2016 ◽  
pp. 37-39
Author(s):  
A. Babirad
Keyword(s):  
Quality Of Life ◽  
Ischemic Stroke ◽  
Large Scale ◽  
Cerebrovascular Diseases ◽  
Control Measures ◽  
Sociological Research ◽  
Cerebrovascular Events ◽  
Sf 36 ◽  
Angioplasty And Stenting

Cerebrovascular diseases are a problem of the world today, and according to the forecast, the problem of the near future arises. The main risk factors for the development of ischemic disorders of the cerebral circulation include oblique and aging, arterial hypertension, smoking, diabetes mellitus and heart disease. An effective strategy for the prevention of cerebrovascular events is based on the implementation of large-scale risk control measures, including the use of antiagregant and anticoagulant therapy, invasive interventions such as atheromectomy, angioplasty and stenting. In this connection, the efforts of neurologists, cardiologists, angiosurgery, endocrinologists and other specialists are the basis for achieving an acceptable clinical outcome. A review of the SF-36 method for assessing the quality of life in patients with the effects of transient ischemic stroke is presented. The assessment of quality of life is recognized in world medical practice and research, an indicator that is also used to assess the quality of the health system and in general sociological research.

Extremes of Temperature

2017 ◽  
Author(s):  
Ann M. Krake
Keyword(s):  
Control Measures ◽  
Temperature Extremes ◽  
Physiological Effects ◽  
Assessment And Evaluation ◽  
The Public ◽  
Adverse Health Effects ◽  
Extreme Cold ◽  
Prevention And Control Measures ◽  
And Control ◽  
Extremes Of Temperature

This chapter covers extremes of temperature conditions, physiological effects, and prevention. All deaths caused by exposure to hot and cold temperature extremes are preventable when proper measures are taken. Described in this chapter are the effects of extreme heat and extreme cold on the health of members of the public, particularly older people and young people, and workers employed in various workplace settings. The differences between heat stress and heat strain are also discussed, as are various regulations governing exposure to temperature extremes. The nature and magnitude of heat- and cold-related conditions and symptoms are described in detail. Final sections of the chapter address various assessment and evaluation tools as well as prevention and control measures. In addition, an appendix describes the hazards related to hyperbaric and hypobaric environments and adverse health effects.

scholarly journals Process Simulation and Techno-Economic Analysis of Large-Scale Bioproduction of Sweet Protein Thaumatin II

Foods ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 838
Author(s):  
Kirolos D. Kelada ◽  
Daniel Tusé ◽  
Yuri Gleba ◽  
Karen A. McDonald ◽  
Somen Nandi
Keyword(s):  
Economic Analysis ◽  
Process Simulation ◽  
Large Scale ◽  
Recombinant Expression ◽  
Molecular Farming ◽  
Consumer Preference ◽  
Production Method ◽  
Long Term Effects ◽  
Adverse Health Effects ◽  
Sweet Proteins

There are currently worldwide efforts to reduce sugar intake due to the various adverse health effects linked with the overconsumption of sugars. Artificial sweeteners have been used as an alternative to nutritive sugars in numerous applications; however, their long-term effects on human health remain controversial. This led to a shift in consumer preference towards non-caloric sweeteners from natural sources. Thaumatins are a class of intensely sweet proteins found in arils of the fruits of the West-African plant Thaumatococcus daniellii. Thaumatins’ current production method through aqueous extraction from this plant and uncertainty of the harvest from tropical rainforests limits its supply while the demand is increasing. Despite successful recombinant expression of the protein in several organisms, no large-scale bioproduction facilities exist. We present preliminary process design, process simulation, and economic analysis for a large-scale (50 metric tons/year) production of a thaumatin II variant using several different molecular farming platforms.

scholarly journals Universal Masking to Control Healthcare-Associated Transmission of SARS-CoV-2

2021 ◽  
pp. 1-24
Author(s):  
Eliza R. Thompson ◽  
Faith S. Williams ◽  
Pat A. Giacin ◽  
Shay Drummond ◽  
Eric Brown ◽  
...  
Keyword(s):  
Large Scale ◽  
Infection Prevention ◽  
Index Patient ◽  
Field Investigation ◽  
Point Prevalence ◽  
Control Measures ◽  
Prevention Measures ◽  
Infection Control Measures ◽  
Va Health Care System ◽  
Healthcare Associated

Abstract Objective: To assess extent of a healthcare-associated outbreak of SARS-CoV-2 and evaluate effectiveness of infection control measures, including universal masking Design: Outbreak investigation including 4 large-scale point-prevalence surveys Setting: Integrated VA Health Care System with 2 facilities and 330 beds Participants: Index patient and 250 exposed patients and staff Methods: We identified exposed patients and staff and classified them as probable and confirmed cases based on symptoms and testing. We performed a field investigation and assessment of patient and staff interactions to develop probable transmission routes. Infection prevention interventions implemented included droplet and contact precautions, employee quarantine, and universal masking with medical and cloth facemasks. Four point-prevalence surveys of patient and staff subsets were conducted using real-time reverse-transcriptase polymerase chain reaction for SARS-CoV-2. Results: Among 250 potentially exposed patients and staff, 14 confirmed cases of Covid-19 were identified. Patient roommates and staff with prolonged patient contact were most likely to be infected. The last potential date of transmission from staff to patient was day 22, the day universal masking was implemented. Subsequent point-prevalence surveys in 126 patients and 234 staff identified 0 patient cases and 5 staff cases of Covid-19, without evidence of healthcare-associated transmission. Conclusions: Universal masking with medical facemasks was effective in preventing further spread of SARS-CoV-2 in our facility in conjunction with other traditional infection prevention measures.

scholarly journals Heterogeneity and effectiveness analysis of COVID-19 prevention and control in major cities in China through time-varying reproduction number estimation

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Qing Cheng ◽  
Zeyi Liu ◽  
Guangquan Cheng ◽  
Jincai Huang
Keyword(s):  
Prevention And Control ◽  
Large Scale ◽  
Reproduction Number ◽  
Correlation Method ◽  
Control Measures ◽  
Time Varying ◽  
Short Period ◽  
Significant Difference ◽  
Prevention And Control Measures ◽  
And Control

AbstractBeginning on December 31, 2019, the large-scale novel coronavirus disease 2019 (COVID-19) emerged in China. Tracking and analysing the heterogeneity and effectiveness of cities’ prevention and control of the COVID-19 epidemic is essential to design and adjust epidemic prevention and control measures. The number of newly confirmed cases in 25 of China’s most-affected cities for the COVID-19 epidemic from January 11 to February 10 was collected. The heterogeneity and effectiveness of these 25 cities’ prevention and control measures for COVID-19 were analysed by using an estimated time-varying reproduction number method and a serial correlation method. The results showed that the effective reproduction number (R) in 25 cities showed a downward trend overall, but there was a significant difference in the R change trends among cities, indicating that there was heterogeneity in the spread and control of COVID-19 in cities. Moreover, the COVID-19 control in 21 of 25 cities was effective, and the risk of infection decreased because their R had dropped below 1 by February 10, 2020. In contrast, the cities of Wuhan, Tianmen, Ezhou and Enshi still had difficulty effectively controlling the COVID-19 epidemic in a short period of time because their R was greater than 1.

scholarly journals Xanthones Production in Gentiana dinarica Beck Hairy Root Cultures Grown in Simple Bioreactors

Plants ◽  
2021 ◽  
Vol 10 (8) ◽  
pp. 1610
Author(s):  
Branka Vinterhalter ◽  
Nevena Banjac ◽  
Dragan Vinterhalter ◽  
Dijana Krstić-Milošević
Keyword(s):  
Hairy Root ◽  
Large Scale ◽  
Bubble Column ◽  
Growth Parameters ◽  
Growth Index ◽  
Dry Weight ◽  
Growth Conditions ◽  
Good Growth ◽  
Gentiana Dinarica ◽  
Hairy Root Clones

The hairy root clones of Gentiana dinarica cl-B, cl-D, cl-3, and cl-14 were cultivated in parallel in diverse simple bioreactors, including temporary immersion systems RITA® (TIS RITA®), bubble column bioreactors (BCB), and Erlenmeyer flasks (EF), and evaluated for biomass production and xanthone content. The obtained results showed that TIS RITA® and BCB containing ½ MS medium with 4% sucrose provided equally good growth conditions in which the majority of the clones displayed the higher percentage of dry matter (DM%), and xanthones norswertianin-1-O-primeveroside (nor-1-O-prim) and norswertianin production than those cultivated in EF. Thin and well branched hairy root clone cl-B grown in BCB for 7 weeks was superior regarding all growth parameters tested, including growth index (19.97), dry weight (2.88 g), and DM% (25.70%) compared to all other clones. Cl-B cultured in TIS RITA® contained the highest amount of nor-1-O-prim (56.82 mg per vessel). In BCB with constant aeration, cl-B accumulated the highest norswertianin content reaching 18.08 mg/vessel. The optimized conditions for cultivation of selected G. dinarica hairy root clones in highly aerated TIS RITA® and BCB systems contribute to the development of bioreactor technology designed for the large scale commercial production of xanthones nor-1-O-prim and norswertianin.

scholarly journals Assessing the Response of Snow Avalanche Runout Altitudes to Climate Fluctuations Using Hierarchical Modeling: Application to 61 Winters of Data in France

2010 ◽  
Vol 23 (12) ◽  
pp. 3157-3180 ◽  
Author(s):  
N. Eckert ◽  
H. Baya ◽  
M. Deschatres
Keyword(s):  
Climate Change ◽  
Large Scale ◽  
Hierarchical Modeling ◽  
Control Measures ◽  
Level Shift ◽  
Snow Avalanches ◽  
Winter Climate ◽  
Climate Fluctuations ◽  
High Magnitude ◽  
Proposed Model

Abstract Snow avalanches are natural hazards strongly controlled by the mountain winter climate, but their recent response to climate change has thus far been poorly documented. In this paper, hierarchical modeling is used to obtain robust indexes of the annual fluctuations of runout altitudes. The proposed model includes a possible level shift, and distinguishes common large-scale signals in both mean- and high-magnitude events from the interannual variability. Application to the data available in France over the last 61 winters shows that the mean runout altitude is not different now than it was 60 yr ago, but that snow avalanches have been retreating since 1977. This trend is of particular note for high-magnitude events, which have seen their probability rates halved, a crucial result in terms of hazard assessment. Avalanche control measures, observation errors, and model limitations are insufficient explanations for these trends. On the other hand, strong similarities in the pattern of behavior of the proposed runout indexes and several climate datasets are shown, as well as a consistent evolution of the preferred flow regime. The proposed runout indexes may therefore be usable as indicators of climate change at high altitudes.

scholarly journals Potential Use of Organic- and Hard-Rock Mine Wastes on Aided Phytostabilization of Large-Scale Mine Tailings under Semiarid Mediterranean Climatic Conditions: Short-Term Field Study

2012 ◽  
Vol 2012 ◽  
pp. 1-15 ◽  
Author(s):  
Claudia Santibañez ◽  
Luz María de la Fuente ◽  
Elena Bustamante ◽  
Sergio Silva ◽  
Pedro León-Lobos ◽  
...  
Keyword(s):  
Mine Tailings ◽  
Large Scale ◽  
Management Practices ◽  
Hard Rock ◽  
Mine Waste ◽  
Organic Amendments ◽  
Dry Weight ◽  
Climatic Conditions ◽  
Goat Manure ◽  
Site Rehabilitation

The study evaluated the efficacy of organic- and hard-rock mine waste type materials on aided phytostabilization of Cu mine tailings under semiarid Mediterranean conditions in order to promote integrated waste management practices at local levels and to rehabilitate large-scale (from 300 to 3,000 ha) postoperative tailings storage facilities (TSFs). A field trial with 13 treatments was established on a TSF to test the efficacy of six waste-type locally available amendments (grape and olive residues, biosolids, goat manure, sediments from irrigation canals, and rubble from Cu-oxide lixiviation piles) during early phases of site rehabilitation. Results showed that, even though an interesting range of waste-type materials were tested, biosolids (100 t ha-1dry weight, d.w.) and grape residues (200 t ha-1d.w.), either alone or mixed, were the most suitable organic amendments when incorporated into tailings to a depth of 20 cm. Incorporation of both rubble from Cu-oxide lixiviation piles and goat manure into upper tailings also had effective results. All these treatments improved chemical and microbiological properties of tailings and lead to a significant increase in plant yield after three years from trial establishment. Longer-term evaluations are, however required to evaluate self sustainability of created systems without further incorporation of amendments.

scholarly journals Analysis of blood-based gene expression in idiopathic Parkinson disease

Neurology ◽  
2017 ◽  
Vol 89 (16) ◽  
pp. 1676-1683 ◽  
Author(s):  
Ron Shamir ◽  
Christine Klein ◽  
David Amar ◽  
Eva-Juliane Vollstedt ◽  
Michael Bonin ◽  
...  
Keyword(s):  
Gene Expression ◽  
Parkinson Disease ◽  
Gene Networks ◽  
Large Scale ◽  
Expression Profiles ◽  
Area Under The Curve ◽  
Gene Expression Profiles ◽  
Gene Signature ◽  
Gene Profiles ◽  
Independent Test

Objective:To examine whether gene expression analysis of a large-scale Parkinson disease (PD) patient cohort produces a robust blood-based PD gene signature compared to previous studies that have used relatively small cohorts (≤220 samples).Methods:Whole-blood gene expression profiles were collected from a total of 523 individuals. After preprocessing, the data contained 486 gene profiles (n = 205 PD, n = 233 controls, n = 48 other neurodegenerative diseases) that were partitioned into training, validation, and independent test cohorts to identify and validate a gene signature. Batch-effect reduction and cross-validation were performed to ensure signature reliability. Finally, functional and pathway enrichment analyses were applied to the signature to identify PD-associated gene networks.Results:A gene signature of 100 probes that mapped to 87 genes, corresponding to 64 upregulated and 23 downregulated genes differentiating between patients with idiopathic PD and controls, was identified with the training cohort and successfully replicated in both an independent validation cohort (area under the curve [AUC] = 0.79, p = 7.13E–6) and a subsequent independent test cohort (AUC = 0.74, p = 4.2E–4). Network analysis of the signature revealed gene enrichment in pathways, including metabolism, oxidation, and ubiquitination/proteasomal activity, and misregulation of mitochondria-localized genes, including downregulation of COX4I1, ATP5A1, and VDAC3.Conclusions:We present a large-scale study of PD gene expression profiling. This work identifies a reliable blood-based PD signature and highlights the importance of large-scale patient cohorts in developing potential PD biomarkers.

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