Vernalization-induced changes of the DNA methylation pattern in winter wheat

Genome ◽  
2002 ◽  
Vol 45 (2) ◽  
pp. 253-260 ◽  
Author(s):  
Jamie D Sherman ◽  
Luther E Talbert
Keyword(s):  
Dna Methylation ◽  
Winter Wheat ◽  
Spring Wheat ◽  
Cold Treatment ◽  
Methylation Pattern ◽  
Dna Demethylation ◽  
Near Isogenic Lines ◽  
Length Polymorphisms ◽  
Amplified Fragment Length Polymorphisms ◽  
Induced Changes

Vernalization is a cold treatment that induces or accelerates flowering and insures that temperate-zone plants will not flower until after winter. There is evidence that vernalization results in DNA demethylation that induces flowering. Differences in DNA methylation can be determined using methylation-sensitive amplified fragment length polymorphisms (AFLPs). Methylation-sensitive AFLPs utilize restriction enzyme isoschizomers that are differentially sensitive to methylation, producing polymorphisms related to methylation differences as opposed to sequence differences. Near-isogenic lines (NILs) have been developed for spring vs. winter habit in wheat (Triticum aestivum) and allow for the study of a single vernalization locus. In this study, differences in the methylation pattern were determined for spring and winter NILs, as well as for unvernalized and vernalized individuals. Winter wheat was more highly methylated than spring wheat and methylation-related AFLPs were produced between winter and spring wheat. Changes in the methylation pattern were observed at the end of vernalization, one week after the end of vernalization, and four weeks after the end of vernalization of winter wheat. However, the most methylation differences were observed one week after removal of winter wheat from cold treatment. Our data suggest that there is not only a vernalization-induced demethylation related to flower induction, but there is also a more general and non-specific demethylation of sequences unrelated to flowering. Two methylation-related AFLPs induced by vernalization were shared among all of the winter NILs.Key words: vernalization, wheat, DNA demethylation, AFLP.

scholarly journals Curcumin from Turmeric Rhizome: A Potential Modulator of DNA Methylation Machinery in Breast Cancer Inhibition

Nutrients ◽  
2021 ◽  
Vol 13 (2) ◽  
pp. 332
Author(s):  
Krystyna Fabianowska-Majewska ◽  
Agnieszka Kaufman-Szymczyk ◽  
Aldona Szymanska-Kolba ◽  
Jagoda Jakubik ◽  
Grzegorz Majewski ◽  
...  
Keyword(s):  
Breast Cancer ◽  
Dna Methylation ◽  
Curcuma Longa ◽  
Cancer Chemoprevention ◽  
Methylation Pattern ◽  
Dna Demethylation ◽  
Perennial Herb ◽  
Epigenetic Events ◽  
Epigenetic Machinery ◽  
Breast Cancer Inhibition

One of the most systematically studied bioactive nutraceuticals for its benefits in the management of various diseases is the turmeric-derived compounds: curcumin. Turmeric obtained from the rhizome of a perennial herb Curcuma longa L. is a condiment commonly used in our diet. Curcumin is well known for its potential role in inhibiting cancer by targeting epigenetic machinery, with DNA methylation at the forefront. The dynamic DNA methylation processes serve as an adaptive mechanism to a wide variety of environmental factors, including diet. Every healthy tissue has a precise DNA methylation pattern that changes during cancer development, forming a cancer-specific design. Hypermethylation of tumor suppressor genes, global DNA demethylation, and promoter hypomethylation of oncogenes and prometastatic genes are hallmarks of nearly all types of cancer, including breast cancer. Curcumin has been shown to modulate epigenetic events that are dysregulated in cancer cells and possess the potential to prevent cancer or enhance the effects of conventional anti-cancer therapy. Although mechanisms underlying curcumin-mediated changes in the epigenome remain to be fully elucidated, the mode of action targeting both hypermethylated and hypomethylated genes in cancer is promising for cancer chemoprevention. This review provides a comprehensive discussion of potential epigenetic mechanisms of curcumin in reversing altered patterns of DNA methylation in breast cancer that is the most commonly diagnosed cancer and the leading cause of cancer death among females worldwide. Insight into the other bioactive components of turmeric rhizome as potential epigenetic modifiers has been indicated as well.

scholarly journals Effects of putrescine and low temperature on the apoplastic antioxidant enzymes in the leaves of two wheat cultivars

2009 ◽  
Vol 55 (No. 8) ◽  
pp. 320-326 ◽  
Author(s):  
T. Çakmak ◽  
Ö. Atıcı
Keyword(s):  
Superoxide Dismutase ◽  
Antioxidant Enzymes ◽  
Low Temperature ◽  
Winter Wheat ◽  
Spring Wheat ◽  
Enzyme Activities ◽  
Cold Treatment ◽  
Wheat Cultivars ◽  
Catalase Peroxidase ◽  
Wheat Leaves

The effects of putrescine (a polyamine), low temperature and their combinations on the activities of apoplastic antioxidant enzymes were studied in the leaves of two wheat cultivars, winter (Dogu-88) and spring (Gerek-79). Fifteen-day-old wheat seedlings were treated with putrescine solutions (0.1, 1 and 10mM) prior to cold treatment (5/3°C). The activities of apoplastic catalase, peroxidase and superoxide dismutase were determined in the leaves both under normal and cold conditions at 1, 3 and 5 days. The results indicate that cold treatment significantly increased the activities of apoplastic catalase, peroxidase and superoxide dismutase in winter wheat while not generally affecting spring wheat. Under control conditions, the putrescine treatments were more effective in increasing the enzyme activities in winter wheat than in spring wheat. However, under cold conditions, the putrescine treatments surprisingly induced enzyme activities in spring wheat while generally reducing those in winter wheat leaves. The results show that putrescine may act as an agent inducing primary changes in the apoplastic antioxidant system of wheat leaves during reactive oxygen species-mediated damage caused by low temperature stress.

scholarly journals Cellular Mechanisms of Oxidative Stress and Action in Melanoma

2015 ◽  
Vol 2015 ◽  
pp. 1-11 ◽  
Author(s):  
Mario Venza ◽  
Maria Visalli ◽  
Concetta Beninati ◽  
Giuseppe Valerio De Gaetano ◽  
Diana Teti ◽  
...  
Keyword(s):  
Oxidative Stress ◽  
Dna Methylation ◽  
Methylation Pattern ◽  
The Body ◽  
Current Evidence ◽  
Cellular Mechanisms ◽  
Melanoma Diagnosis ◽  
Life Threatening ◽  
Induced Changes ◽  
The Impact

Most melanomas occur on the skin, but a small percentage of these life-threatening cancers affect other parts of the body, such as the eye and mucous membranes, including the mouth. Given that most melanomas are caused by ultraviolet radiation (UV) exposure, close attention has been paid to the impact of oxidative stress on these tumors. The possibility that key epigenetic enzymes cannot act on a DNA altered by oxidative stress has opened new perspectives. Therefore, much attention has been paid to the alteration of DNA methylation by oxidative stress. We review the current evidence about (i) the role of oxidative stress in melanoma initiation and progression; (ii) the mechanisms by which ROS influence the DNA methylation pattern of transformed melanocytes; (iii) the transformative potential of oxidative stress-induced changes in global and/or local gene methylation and expression; (iv) the employment of this epimutation as a biomarker for melanoma diagnosis, prognosis, and drug resistance evaluation; (v) the impact of this new knowledge in clinical practice for melanoma treatment.

scholarly journals Acute and chronic gregarisation are associated with distinct DNA methylation fingerprints in desert locusts

2015 ◽  
Author(s):  
Eamonn B. Mallon ◽  
Harindra E. Amarasinghe ◽  
Swidbert R. Ott
Keyword(s):  
Dna Methylation ◽  
Central Nervous System ◽  
Nervous System ◽  
Schistocerca Gregaria ◽  
Dramatic Form ◽  
Length Polymorphisms ◽  
Amplified Fragment Length Polymorphisms ◽  
Intermediate States ◽  
The Central Nervous System ◽  
Phase Polyphenism

AbstractDesert locusts (Schistocerca gregaria) show a dramatic form of socially induced phenotypic plasticity known as phase polyphenism. In the absence of conspecifics, locusts occur in a shy and cryptic solitarious phase. Crowding with conspecifics drives a behavioural transformation towards gregariousness that occurs within hours and is followed by changes in physiology, colouration and morphology, resulting in the full gregarious phase syndrome. We analysed methylation-sensitive amplified fragment length polymorphisms (MS-AFLP) to compare the effect of acute and chronic crowding on DNA methylation in the central nervous system. We find that crowd-reared and solitary-reared locusts show markedly different neural MS-AFLP fingerprints. However, crowding for a day resulted in neural MS-AFLP fingerprints that were clearly distinct from both crowd-reared and uncrowded solitary-reared locusts. Our results indicate that changes in DNA methylation associated with behavioural gregarisation proceed through intermediate states that are not simply partial realisations of the endpoint states.

Examination of the dynamics of global DNA methylation pattern establishment during spermatogenesiss

2007 ◽  
Vol 30 (4) ◽  
pp. 90
Author(s):  
Kirsten Niles ◽  
Sophie La Salle ◽  
Christopher Oakes ◽  
Jacquetta Trasler
Keyword(s):  
Dna Methylation ◽  
Germ Cell ◽  
Germ Cells ◽  
Epigenetic Modification ◽  
Methylation Pattern ◽  
Chromosome 9 ◽  
Specific Gene ◽  
Global Methylation ◽  
Dna Methylation Pattern ◽  
Methylation Patterns

Background: DNA methylation is an epigenetic modification involved in gene expression, genome stability, and genomic imprinting. In the male, methylation patterns are initially erased in primordial germ cells (PGCs) as they enter the gonadal ridge; methylation patterns are then acquired on CpG dinucleotides during gametogenesis. Correct pattern establishment is essential for normal spermatogenesis. To date, the characterization and timing of methylation pattern acquisition in PGCs has been described using a limited number of specific gene loci. This study aimed to describe DNA methylation pattern establishment dynamics during male gametogenesis through global methylation profiling techniques in a mouse model. Methods: Using a chromosome based approach, primers were designed for 24 regions spanning chromosome 9; intergenic, non-repeat, non-CpG island sequences were chosen for study based on previous evidence that these types of sequences are targets for testis-specific methylation events. The percent methylation was determined in each region by quantitative analysis of DNA methylation using real-time PCR (qAMP). The germ cell-specific pattern was determined by comparing methylation between spermatozoa and liver. To examine methylation in developing germ cells, spermatogonia from 2 day- and 6 day-old Oct4-GFP (green fluorescent protein) mice were isolated using fluorescence activated cell sorting. Results: As compared to liver, four loci were hypomethylated and five loci were hypermethylated in spermatozoa, supporting previous results indicating a unique methylation pattern in male germ cells. Only one region was hypomethylated and no regions were hypermethylated in day 6 spermatogonia as compared to mature spermatozoa, signifying that the bulk of DNA methylation is established prior to type A spermatogonia. The methylation in day 2 spermatogonia, germ cells that are just commencing mitosis, revealed differences of 15-20% compared to day 6 spermatogonia at five regions indicating that the most crucial phase of DNA methylation acquisition occurs prenatally. Conclusion: Together, these studies provide further evidence that germ cell methylation patterns differ from those in somatic tissues and suggest that much of methylation at intergenic sites is acquired during prenatal germ cell development. (Supported by CIHR)

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