Consequences of assuming an incorrect error structure in von Bertalanffy growth models: a simulation study

2007 ◽  
Vol 64 (4) ◽  
pp. 602-617 ◽  
Author(s):  
J Paige Eveson ◽  
Tom Polacheck ◽  
Geoff M Laslett

The underlying sources of growth variability in a population cannot generally be known, so when modelling growth it is important to understand the consequences of assuming an incorrect error structure. In this study, four error models for a von Bertalanffy growth curve with asymptotic length parameter L∞ and growth rate parameter k are considered. Simulations are carried out in which data are generated according to one of the models and fitted assuming each of the models to be true. This is done for two types of data: direct age–length and tag–recapture. For direct age–length data, the consequences of not accounting for individual growth variability, or assuming the wrong source of variability, are minor, even when individual variability is high or data coverage is poor. For tag–recapture data, some substantial biases in growth estimates can arise when individual variability exists but is not accounted for. Importantly, however, incorporating variability in just one parameter (be it L∞ or k), even if the variability truly stems from the other or both parameters, generally leads to much smaller biases than assuming no individual variability. Often the alternative models cannot be distinguished using standard model selection procedures, so caution is warranted in using model selection to draw inferences about underlying sources of growth variability.

Fishes ◽  
2021 ◽  
Vol 6 (3) ◽  
pp. 35
Author(s):  
Marcelo V. Curiel-Bernal ◽  
E. Alberto Aragón-Noriega ◽  
Miguel Á. Cisneros-Mata ◽  
Laura Sánchez-Velasco ◽  
S. Patricia A. Jiménez-Rosenberg ◽  
...  

Obtaining the best possible estimates of individual growth parameters is essential in studies of physiology, fisheries management, and conservation of natural resources since growth is a key component of population dynamics. In the present work, we use data of an endangered fish species to demonstrate the importance of selecting the right data error structure when fitting growth models in multimodel inference. The totoaba (Totoaba macdonaldi) is a fish species endemic to the Gulf of California increasingly studied in recent times due to a perceived threat of extinction. Previous works estimated individual growth using the von Bertalanffy model assuming a constant variance of length-at-age. Here, we reanalyze the same data under five different variance assumptions to fit the von Bertalanffy and Gompertz models. We found consistent significant differences between the constant and nonconstant error structure scenarios and provide an example of the consequences using the growth performance index ϕ′ to show how using the wrong error structure can produce growth parameter values that can lead to biased conclusions. Based on these results, for totoaba and other related species, we recommend using the observed error structure to obtain the individual growth parameters.


1995 ◽  
Vol 52 (2) ◽  
pp. 252-259 ◽  
Author(s):  
You-Gan Wang ◽  
Mervyn R. Thomas ◽  
Ian F. Somers

The Fabens method is commonly used to estimate growth parameters k and l∞ in the von Bertalanffy model from tag–recapture data. However, the Fabens method of estimation has an inherent bias when individual growth is variable. This paper presents an asymptotically unbiassed method using a maximum likelihood approach that takes account of individual variability in both maximum length and age-at-tagging. It is assumed that each individual's growth follows a von Bertalanffy curve with its own maximum length and age-at-tagging. The parameter k is assumed to be a constant to ensure that the mean growth follows a von Bertalanffy curve and to avoid overparameterization. Our method also makes more efficient use of the measurements at tag and recapture and includes diagnostic techniques for checking distributional assumptions. The method is reasonably robust and performs better than the Fabens method when individual growth differs from the von Bertalanffy relationship. When measurement error is negligible, the estimation involves maximizing the profile likelihood of one parameter only. The method is applied to tag–recapture data for the grooved tiger prawn (Penaeus semisulcatus) from the Gulf of Carpentaria, Australia.


2002 ◽  
Vol 59 (3) ◽  
pp. 424-432 ◽  
Author(s):  
Graham M Pilling ◽  
Geoffrey P Kirkwood ◽  
Stephen G Walker

A new method for estimating individual variability in the von Bertalanffy growth parameters of fish species is presented. The method uses a nonlinear random effects model, which explicitly assumes that an individual's growth parameters represent samples from a multivariate population of growth parameters characteristic of a species or population. The method was applied to backcalculated length-at-age data from the tropical emperor, Lethrinus mahsena. Individual growth parameter variability estimates were compared with those derived using the current "standard" method, which characterizes the joint distribution of growth parameter estimates obtained by independently fitting a growth curve to each individual data set. Estimates of mean von Bertalanffy growth parameters from the two methods were similar. However, estimated growth parameter variances were much higher using the standard method. Using the random effects model, the estimated correlation between population mean values of L[Formula: see text] and K was –0.52 or –0.42, depending on the marginal distribution assumed for K. The latter estimate had a 95% posterior credibility interval of –0.62 to –0.17. These represent the first reliable estimate of this correlation and confirm the view that these parameters are negatively correlated in fish populations; however, the absolute correlation value is somewhat lower than has been assumed.


1988 ◽  
Vol 45 (6) ◽  
pp. 936-942 ◽  
Author(s):  
R. I. C. C. Francis

The two most common ways of estimating fish growth use age–length data and tagging data. It is shown that growth parameters estimated from these two types of data have different meanings and thus are not directly comparable. In particular, the von Bertalanffy parameter l∞ means asymptotic mean length at age for age–length data, and maximum length for tagging data, when estimated by conventional methods. New parameterizations are given for the von Bertalanffy equation which avoid this ambiguity and better represent the growth information in the two types of data. The comparison between growth estimates from these data sets is shown to be equivalent to comparing the mean growth rate of fish of a given age with that of fish of length equal to the mean length at that age. How much these growth rates may differ in real populations remains unresolved: estimates for two species of fish produced markedly different results, neither of which could be reproduced using growth models. Existing growth models are shown to be inadequate to answer this question.


1980 ◽  
Vol 37 (2) ◽  
pp. 241-247 ◽  
Author(s):  
K. J. Sainsbury

The growth in length of a group of animals is examined. Each animal is assumed to grow according to the von Bertalanffy model with fixed parameters, but these parameters are allowed to differ between individuals. Equations governing the mean and variance of length at given age and growth increment at given length are provided, and their implications discussed. Results indicate that the traditional growth equation is likely to result in an underestimate of the mean value of K when either length at age or growth increment data are analyzed. This problem does not appear serious when using length at age data. However, the problems of interpretation are more serious in the case of growth increment data where serious overestimates of the reconstructed mean length at age can result. A thorough analysis of growth cannot be made for a population exhibiting individual variability in L∞ and K from growth increment data alone. In particular a nonlinear relationship between growth increment and initial length does not necessarily imply that the von Bertalanffy model is inappropriate to the species in question. A topic urgently in need of examination is the form of the joint distribution of K and L∞ in animal populations.Key words: von Bertalanffy, growth models


2020 ◽  
Vol 13 (3) ◽  
pp. 378-386
Author(s):  
Rémi Perronne ◽  
Franck Jabot ◽  
Julien Pottier

Abstract Aims Individual growth constitutes a major component of individual fitness. However, measuring growth rates of herbaceous plants non-destructively at the individual level is notoriously difficult. This study, based on an accurate non-destructive method of aboveground biomass estimation, aims to assess individual relative growth rates (RGRs) of some species, identify its environmental drivers and test its consequences on community patterning. We specifically address three questions: (i) to what extent environmental conditions explain differences in individual plant growth between sites, (ii) what is the magnitude of intraspecific variability of plant individual growth within and between sites and (iii) do species-averaged (dis-)advantage of individual growth compared with the whole vegetation within a site correlate with species ranking at the community level? Methods We monitored the growth of individuals of four common perennial species in 18 permanent grasslands chosen along a large pedoclimatic gradient located in the Massif Central, France. We measured soil properties, levels of resources and meteorological parameters to characterize environmental conditions at the site level. This design enables us to assess the influence of environmental conditions on individual growth and the relative extent of inter-individual variability of growth explained within and between sites. We determined the ranking of each of the four species in each site with botanical surveys to assess the relationship between species-averaged growth (dis-)advantage relative to the whole community and species rank in the community. Important Findings We found that environmental conditions explain a significant proportion of individual growth variability, and that this proportion is strongly variable between species. Light availability was the main driver of plant growth, followed by rainfall amount and potential evapotranspiration, while soil properties had only a slight effect. We further highlighted a moderate to high within-site inter-individual variability of growth. We finally showed that there was no correlation between species ranking and species-averaged individual growth.


Fishes ◽  
2021 ◽  
Vol 6 (1) ◽  
pp. 1
Author(s):  
Shane A. Flinn ◽  
Stephen R. Midway

Growth models estimate life history parameters (e.g., growth rates and asymptotic size) that are used in the management of fisheries stocks. Traditionally in fisheries science, it was common to fit one growth model—the von Bertalanffy growth model—to size-at-age data. However, in recent years, fisheries science has seen an increase in the number of growth models available and the evaluation of multiple growth models for a given species or study. We reviewed n = 196 peer-reviewed age and growth studies and n = 50 NOAA (National Oceanic and Atmospheric Administration) regional stock assessments to examine trends in the use of growth models and model selection in fisheries over time. Our results indicate that the total number of age and growth studies increased annually since 1988 with a slight proportional increase in the use of multi-model frameworks. Information theoretic approaches are replacing goodness-of-fit and a priori model selection in fisheries studies; however, this trend is not reflected in NOAA stock assessments, which almost exclusively rely on the von Bertalanffy growth model. Covariates such as system (e.g., marine or fresh), location of study, diet, family, maximum age, and range of age data used in model fitting did not contribute to which model was ultimately the best fitting, suggesting that there are no large-scale patterns of specific growth models being applied to species with common life histories or other attributes. Given the importance and ubiquity of growth modeling to fisheries science, a historical and contemporary understanding of the practice is critical to evaluate improvements that have been made and future challenges.


1995 ◽  
Vol 52 (7) ◽  
pp. 1368-1375 ◽  
Author(s):  
Yoy-Gan Wang ◽  
Mervyn R. Thomas

Estimation of von Bertalanffy growth parameters has received considerable attention in fisheries research. Since Sainsbury (1980, Can. J. Fish. Aquat. Sci. 37: 241–247) much of this research effort has centered on accounting for individual variability in the growth parameters. In this paper we demonstrate that, in analysis of tagging data, Sainsbury's method and its derivatives do not, in general, satisfactorily account for individual variability in growth, leading to inconsistent parameter estimates (the bias does not tend to zero as sample size increases to infinity). The bias arises because these methods do not use appropriate conditional expectations as a basis for estimation. This bias is found to be similar to that of the Fabens method. Such methods would be appropriate only under the assumption that the individual growth parameters that generate the growth increment were independent of the growth parameters that generated the initial length. However, such an assumption would be unrealistic. The results are derived analytically, and illustrated with a simulation study. Until techniques that take full account of the appropriate conditioning have been developed, the effect of individual variability on growth has yet to be fully understood.


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