Field validation of an instantaneous estimate of in situ development and growth for marine copepod communities

2006 ◽  
Vol 63 (12) ◽  
pp. 2639-2647 ◽  
Author(s):  
Akash R Sastri ◽  
John F Dower
Keyword(s):  
Growth Rates ◽  
Natural Populations ◽  
Field Validation ◽  
Marine Copepod ◽  
Marine Zooplankton ◽  
Coastal British Columbia ◽  
Individual Body ◽  
Good Agreement ◽  
Marine Copepods

To date, efforts to develop a method for rapidly measuring the development and growth rates of marine zooplankton have met with little success. In recent years, however, a simple assay based on a crustacean moulting enzyme, chitobiase, has shown considerable promise. Previous laboratory studies have demonstrated that chitobiase activity is proportional to individual body size across three species of freshwater daphnids. Here, we show that a significant positive relationship exists between chitobiase activity and body length (and weight) across four species of marine copepods collected from natural populations in coastal British Columbia, Canada. We measured the decay rate of chitobiase in the water column and estimated in situ moulting and growth rates of the entire copepod community, which are in good agreement (5%–15%) with conventional moulting rates and literature-based estimates. This method can be applied at a relatively high spatial and temporal resolution and its utility is potentially analogous to conventional community-wide productivity estimates for phytoplankton and bacterioplankton in marine and freshwater systems.

scholarly journals Benchmarking microbial growth rate predictions from metagenomes

2020 ◽  
Vol 15 (1) ◽  
pp. 183-195
Author(s):  
Andrew M. Long ◽  
Shengwei Hou ◽  
J. Cesar Ignacio-Espinoza ◽  
Jed A. Fuhrman
Keyword(s):  
Growth Rates ◽  
Microbial Growth ◽  
Community Dynamics ◽  
Natural Populations ◽  
Maximum Growth ◽  
Microbial Interactions ◽  
Bacterial Populations ◽  
Pure Cultures ◽  
Actual Growth

AbstractGrowth rates are central to understanding microbial interactions and community dynamics. Metagenomic growth estimators have been developed, specifically codon usage bias (CUB) for maximum growth rates and “peak-to-trough ratio” (PTR) for in situ rates. Both were originally tested with pure cultures, but natural populations are more heterogeneous, especially in individual cell histories pertinent to PTR. To test these methods, we compared predictors with observed growth rates of freshly collected marine prokaryotes in unamended seawater. We prefiltered and diluted samples to remove grazers and greatly reduce virus infection, so net growth approximated gross growth. We sampled over 44 h for abundances and metagenomes, generating 101 metagenome-assembled genomes (MAGs), including Actinobacteria, Verrucomicrobia, SAR406, MGII archaea, etc. We tracked each MAG population by cell-abundance-normalized read recruitment, finding growth rates of 0 to 5.99 per day, the first reported rates for several groups, and used these rates as benchmarks. PTR, calculated by three methods, rarely correlated to growth (r ~−0.26–0.08), except for rapidly growing γ-Proteobacteria (r ~0.63–0.92), while CUB correlated moderately well to observed maximum growth rates (r = 0.57). This suggests that current PTR approaches poorly predict actual growth of most marine bacterial populations, but maximum growth rates can be approximated from genomic characteristics.

scholarly journals Dead heat: copepod carcass occurrence along the Japanese coasts and implications for a warming ocean

2019 ◽  
Vol 76 (6) ◽  
pp. 1825-1835 ◽  
Author(s):  
K W Tang ◽  
J A Ivory ◽  
S Shimode ◽  
Y Nishibe ◽  
K Takahashi
Keyword(s):  
Latitudinal Gradient ◽  
Temperature Dependent ◽  
Vital Status ◽  
Marine Food Web ◽  
Marine Copepod ◽  
Marine Zooplankton ◽  
The Past ◽  
Predation Mortality ◽  
Marine Food

Abstract Understanding global warming effects on marine zooplankton is key to proper management of marine resources and fisheries. This is particularly urgent for Japan where the coastal water temperature has been increasing faster than the global average over the past decade. Conventional sampling and monitoring programmes, by ignoring the in situ vital status of the zooplankton, produce incomplete information about the state of the ecosystem. We showed that marine copepod carcasses were ubiquitous along a latitudinal gradient of 34–39°N of the Japanese coasts. On average, 4.4–18.1% of the individuals of the main copepod genera (Acartia, Paracalanus, Oithona, and Pseudocalanus) were carcasses, equivalent to 19–250 µg C m−3. Higher fractions of dead copepods tended to occur at higher water temperatures, implicating temperature-dependent non-predation mortality. Carcass occurrence may represent a loss of copepod production for the traditional predation-based food chain. On average, 49.5% of the carcass carbon would be remineralized in the water column via bacteria respiration, with the remainder potentially exported to the seafloor. Continuous warming in the Japanese coasts is expected to accelerate non-predation copepod mortality, with unknown consequences for the local marine food web.

Phytoplankton Cages for the Measurement In Situ of the Growth Rates of Mixed Natural Populations

1977 ◽  
Vol 18 (4) ◽  
pp. 325 ◽  
Author(s):  
Olga v. H. Owens ◽  
P. Dresler ◽  
C. C. Crawford ◽  
Mary A. Tyler ◽  
H. H. Seliger
Keyword(s):  
Growth Rates ◽  
Natural Populations

Atomic Layer Deposition of LiF and Lithium Ion Conducting (AlF3)(LiF)x Alloys Using Trimethylaluminum, Lithium Hexamethyldisilazide and Hydrogen Fluoride

2017 ◽  
Author(s):  
Younghee Lee ◽  
Daniela M. Piper ◽  
Andrew S. Cavanagh ◽  
Matthias J. Young ◽  
Se-Hee Lee ◽  
...  
Keyword(s):  
Lithium Ion ◽  
Atomic Layer ◽  
Mass Gain ◽  
Alloy Film ◽  
Ex Situ ◽  
X Ray ◽  
Layer Deposition ◽  
Ion Conducting ◽  
Good Agreement

<div>Atomic layer deposition (ALD) of LiF and lithium ion conducting (AlF<sub>3</sub>)(LiF)<sub>x</sub> alloys was developed using trimethylaluminum, lithium hexamethyldisilazide (LiHMDS) and hydrogen fluoride derived from HF-pyridine solution. ALD of LiF was studied using in situ quartz crystal microbalance (QCM) and in situ quadrupole mass spectrometer (QMS) at reaction temperatures between 125°C and 250°C. A mass gain per cycle of 12 ng/(cm<sup>2</sup> cycle) was obtained from QCM measurements at 150°C and decreased at higher temperatures. QMS detected FSi(CH<sub>3</sub>)<sub>3</sub> as a reaction byproduct instead of HMDS at 150°C. LiF ALD showed self-limiting behavior. Ex situ measurements using X-ray reflectivity (XRR) and spectroscopic ellipsometry (SE) showed a growth rate of 0.5-0.6 Å/cycle, in good agreement with the in situ QCM measurements.</div><div>ALD of lithium ion conducting (AlF3)(LiF)x alloys was also demonstrated using in situ QCM and in situ QMS at reaction temperatures at 150°C A mass gain per sequence of 22 ng/(cm<sup>2</sup> cycle) was obtained from QCM measurements at 150°C. Ex situ measurements using XRR and SE showed a linear growth rate of 0.9 Å/sequence, in good agreement with the in situ QCM measurements. Stoichiometry between AlF<sub>3</sub> and LiF by QCM experiment was calculated to 1:2.8. XPS showed LiF film consist of lithium and fluorine. XPS also showed (AlF<sub>3</sub>)(LiF)x alloy consists of aluminum, lithium and fluorine. Carbon, oxygen, and nitrogen impurities were both below the detection limit of XPS. Grazing incidence X-ray diffraction (GIXRD) observed that LiF and (AlF<sub>3</sub>)(LiF)<sub>x</sub> alloy film have crystalline structures. Inductively coupled plasma mass spectrometry (ICP-MS) and ionic chromatography revealed atomic ratio of Li:F=1:1.1 and Al:Li:F=1:2.7: 5.4 for (AlF<sub>3</sub>)(LiF)<sub>x</sub> alloy film. These atomic ratios were consistent with the calculation from QCM experiments. Finally, lithium ion conductivity (AlF<sub>3</sub>)(LiF)<sub>x</sub> alloy film was measured as σ = 7.5 × 10<sup>-6</sup> S/cm.</div>

Measurement of growth rates for single crystals and pressed tablets of CuSO4.5 H2O on a rotating disc

1989 ◽  
Vol 54 (11) ◽  
pp. 2951-2961 ◽  
Author(s):  
Miloslav Karel ◽  
Jaroslav Nývlt
Keyword(s):  
Growth Rate ◽  
Single Crystal ◽  
Single Crystals ◽  
Growth Rates ◽  
Diffusion Coefficients ◽  
Preferred Orientation ◽  
Rotating Disc ◽  
Dissolution Rates ◽  
Rates Of Growth ◽  
Good Agreement

Measured growth and dissolution rates of single crystals and tablets were used to calculate the overall linear rates of growth and dissolution of CuSO4.5 H2O crystals. The growth rate for the tablet is by 20% higher than that calculated for the single crystal. It has been concluded that this difference is due to a preferred orientation of crystal faces on the tablet surface. Calculated diffusion coefficients and thicknesses of the diffusion and hydrodynamic layers in the vicinity of the growing or dissolving crystal are in good agreement with published values.

scholarly journals Millisecond lattice gasification for high-density CO2- and O2-sieving nanopores in single-layer graphene

2021 ◽  
Vol 7 (9) ◽  
pp. eabf0116
Author(s):  
Shiqi Huang ◽  
Shaoxian Li ◽  
Luis Francisco Villalobos ◽  
Mostapha Dakhchoune ◽  
Marina Micari ◽  
...  
Keyword(s):  
Single Layer ◽  
High Density ◽  
Single Layer Graphene ◽  
Pore Density ◽  
Vacancy Defects ◽  
Carbon Gasification ◽  
Layer Graphene ◽  
Gas Molecules ◽  
Good Agreement

Etching single-layer graphene to incorporate a high pore density with sub-angstrom precision in molecular differentiation is critical to realize the promising high-flux separation of similar-sized gas molecules, e.g., CO2 from N2. However, rapid etching kinetics needed to achieve the high pore density is challenging to control for such precision. Here, we report a millisecond carbon gasification chemistry incorporating high density (>1012 cm−2) of functional oxygen clusters that then evolve in CO2-sieving vacancy defects under controlled and predictable gasification conditions. A statistical distribution of nanopore lattice isomers is observed, in good agreement with the theoretical solution to the isomer cataloging problem. The gasification technique is scalable, and a centimeter-scale membrane is demonstrated. Last, molecular cutoff could be adjusted by 0.1 Å by in situ expansion of the vacancy defects in an O2 atmosphere. Large CO2 and O2 permeances (>10,000 and 1000 GPU, respectively) are demonstrated accompanying attractive CO2/N2 and O2/N2 selectivities.

Measuring Reservoir Compaction Through Radioactive Marker Technique

2002 ◽  
Vol 124 (4) ◽  
pp. 269-275
Author(s):  
Paolo Macini ◽  
Ezio Mesini
Keyword(s):  
Land Subsidence ◽  
Reservoir Rock ◽  
Reservoir Compaction ◽  
Critical Comparison ◽  
In Situ Method ◽  
Sufficient Precision ◽  
Good Agreement

Radioactive Marker Technique (RMT), an in-situ method to measure reservoir rock compaction and to evaluate uniaxial compressibility coefficients Cm, is examined here. Recent field applications seems to confirm that RMT-derived Cm’s match with sufficient precision with those calculated from land subsidence observed over the field by means of geodetic surveys, but are not always in good agreement with those derived from lab measurements. In particular, here is reported an application of RMT in the Italian Adriatic offshore, which highlights the discrepancies of Cm’s measurements from lab and RMT. At present, these discrepancies aren’t thoroughly understood, so, from an applicative standpoint, it is still necessary to perform a critical comparison and integration between both set of data.

Photoinhibition of DCMU-Enhanced Fluorescence in Lake Ontario Phytoplankton

1987 ◽  
Vol 44 (12) ◽  
pp. 2144-2154 ◽  
Author(s):  
M. Putt ◽  
G. P. Harris ◽  
R. L. Cuhel
Keyword(s):  
Vertical Mixing ◽  
Natural Populations ◽  
Bright Light ◽  
Euphotic Zone ◽  
Lake Ontario ◽  
Enhanced Fluorescence ◽  
Low Light ◽  
Light Levels ◽  
Phosphorus Status

Measurement of 1-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU) enhanced fluorescence (FDCMU) suggested that photoinhibition of photosynthesis was frequently an artifact of in situ bottle incubations in Lake Ontario phytoplankton. In a seasonal study, FDCMU of all populations was depressed by bright light in an incubator. However, when the euphotic zone did not exceed the depth of the mixed layer, vertical transport of phytoplankton into either low-light or dark regions apparently allowed reversal of photoinhibition of FDCMU. Advantages of FDCMU as a bioassay of vertical mixing include rapidity of response time, ease of measurement in the field, and insensitivity of this parameter to changes in phosphorus status of the population. Because of seasonal changes in the photoadaptive response of natural populations, the rate constants and threshold light levels required to cause the response must be determined at each use if the method is to be quantitative.

Spatial genetic substructure within natural populations of jack pine (Pinus banksiana)

1991 ◽  
Vol 69 (3) ◽  
pp. 547-551 ◽  
Author(s):  
Chang Yi Xie ◽  
Peggy Knowles
Keyword(s):  
Spatial Autocorrelation ◽  
Pinus Banksiana ◽  
Pollen Dispersal ◽  
Natural Populations ◽  
Jack Pine ◽  
Spatial Autocorrelation Analysis ◽  
Autocorrelation Analysis ◽  
Long Distance ◽  
Genetic Substructure ◽  
Good Agreement

Spatial autocorrelation analysis was used to investigate the geographic distribution of allozyme genotypes within three natural populations of jack pine (Pinus banksiana Lamb.). Results indicate that genetic substructuring within these populations is very weak and the extent differs among populations. These results are in good agreement with those inferred from mating-system studies. Factors such as the species' predominantly outbreeding system, high mortality of selfs and inbreds prior to reproduction, long-distance pollen dispersal, and the absence of strong microhabitat selection may be responsible for the observed weak genetic substructuring. Key words: jack pine, Pinus banksiana, genetic substructure, allozyme, spatial autocorrelation analysis.

Technique d'observation de surface in situ (TOSIS) :

1996 ◽  
Vol 84 ◽  
pp. 17-22
Author(s):  
A. Ranaivoarisoa ◽  
J. M. Olive ◽  
D. Desjardins
Keyword(s):  
Aqueous Solution ◽  
Crack Initiation ◽  
Grain Boundaries ◽  
Growth Rates ◽  
Triple Junction ◽  
Crack Nucleation ◽  
Initiation Time ◽  
Mesoscopic Scale ◽  
Crack Growth Rates

An optical method named In Situ Surface Observation Technique (ISSOT) is presented in this paper. This method is used to detect crack nucleation from a flaw (here a pit) at mesoscopic scale during a triangular push-pull cycling test under the control of charge amplitude in aqueous solution ofMgCl2 at 117°C. It can be found that the crack initiation time determined by using this technique represents 2 % of that estimated from a mechanical criterion. Moreover, the follow of the crack tip evolution by the ISSOT allows to measure average local crack growth rates. It has been shown that the variations of the latter were related to the effects of barriers such as grain boundaries, twin boundaries and grain boundaries triple junction.

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