Molecular systematics of the Hypocreales: a teleomorph gene phylogeny and the status of their anamorphs

1995 ◽  
Vol 73 (S1) ◽  
pp. 816-823 ◽  
Author(s):  
Stephen A. Rehner ◽  
Gary J. Samuels

Phylogenetic relationships among 40 species in the Hypocreales and Clavicipitales were inferred from sequence data obtained from the nuclear large-subunit ribosomal DNA. Cladistic analysis of these data support the monophyly of the Hypocreales, with the Clavicipitales derived from within the Hypocreales. Four groupings were resolved and are informally designated as the Hypocrea, Claviceps, Bionectria, and Nectria groups. Phylogenetic placement of teleomorphs including Melanospora and cleistothecial taxa, such as Heleococcum, Mycoarachis, and Roumegueriella, demonstrate the facility of molecular phylogenies to accommodate taxa with highly modified morphologies. Similarly, the hypocrealean origins of the anamorph species Verticillium lecanii and Acremonium chrysogenum illustrate the potential of the molecular phylogenetic approach to accommodate anamorph isolates within the context of a teleomorph phylogeny. Together these results suggest that a comprehensive classification of the Hypocreales, inclusive of teleomorph and anamorph states, is attainable through a molecular phylogenetic approach. Key words: Ascomycotina, Clavicipitaceae, Hypocreales, phylogeny, pyrenomycete, rDNA.

Phytotaxa ◽  
2018 ◽  
Vol 369 (4) ◽  
pp. 241 ◽  
Author(s):  
CHUAN-GEN LIN ◽  
ERIC H. C. MCKENZIE ◽  
DARBHE J. BHAT ◽  
JIAN-KUI LIU ◽  
KEVIN D. HYDE ◽  
...  

A new species, Pseudodactylaria brevis, is described, illustrated and compared with other Pseudodactylaria and Dactylaria-like taxa. Evidence for the new species is provided by morphological comparison and sequence data analyses. Pseudodactylaria brevis can be distinguished from other Pseudodactylaria and Dactylaria-like species by its short hyaline conidiophores and fusiform, 1-septate hyaline conidia. Phylogenetic analysis of LSU and ITS sequence data was carried out to determine the phylogenetic placement of the species and confirm the taxonomic status of Pseudodactylariaceae.


1997 ◽  
Vol 11 (1) ◽  
pp. 1 ◽  
Author(s):  
A. D. Austin ◽  
and S. A. Field

The morphology of the sclerotised components of the ovipositor system is comprehensively surveyed for scelionid and platygastrid wasps, with information being assessed for 120 genera and 220 species. A diagnosis for the ovipositor system is presented for most genera to complement existing generic descriptions. Two previously described and mechanically different forms of the ovipositor system are recognised: (1) the Ceratobaeus-type that is extended and retracted by antagonistic muscles and (2) the Scelio-type that is operated by changes in hydrostatic pressure, where the ovipositor is extended at the end of an elongate telescopic tube derived from expanded intersegmental membrane between metasomal segments 6 and 7. Comparison of these forms with the supposed ground plan for the Scelionidae strongly indicates that the Scelio-type is apomorphic, that it defines a monophyletic group associated with orthopteran host eggs, and that it comprises the tribes Scelionini, Calliscelionini, most Psilanteridini, Aradophagini, Neoscelionini, Platyscelionini, Doddiellini and four genera misplaced within the Sparasionini and Baryconini (Archaeoteleia Masner, Bracalba Dodd, Chromoteleia Ashmead and Oxyscelio Kieffer), as well as Sceliacanthella Dodd. Until a more robust classification of the superfamily is forthcoming, it is proposed that this group be informally referred to as the 'Scelionini sensu lato'. Further, seven genera (Habroteleia Kieffer, Palpoteleia Kieffer, Anteris Foerster, Fusicornia Risbec, Leptoteleia Kieffer, Opisthacantha Ashmead and Styloteleia Kieffer) are misplaced in the Calliscelionini and Psilanteridini because they possess the Ceratobaeus-type system. Nixonia Masner, Sparasion Latreille and Sceliomorpha Ashmead (Sparasionini) are considered to have the most primitive ovipositor system because they possess a Ceratobaeus-type system, and sub-basally fused lateral and latero-ventral apodemes, the latter being loosely attached to sternite 6. Sparasion and Sceliomorpha also have very short lateral apodemes and this, in conjunction with the form of the apodemes, can be considered to be the ground plan for the superfamily. The Platygastridae all possess a modified ovipositor system but, nonetheless, one that in most cases is extended and retracted by musculature (i.e. Ceratobaeus-type). In particular, the system in most platygastrids is typified by having metasomal tergite 8 and associated cerci missing, the lateral apodemes short and forming a U-shape, and the ovipositor assembly generally robust. Only one of approximately 30 genera examined, Acerotella Masner, has very elongate apodemes, as in the Scelionidae. Many platygastrids also have a pair of latero-ventral apodemes, a presumed plesiomorphic character, rather than a single medial apodeme on stemite 6, which is the case for many Scelionidae. The most highly modified system is found in Isostasius Foerster and some Synopeas (Sactogaster) Foerster, where the ovipositor assembly is coiled vertically or partly so and the apodemes are greatly reduced. Generally, characters associated with the ovipositor system do not provide any independent support for the most recent higher-level classification of platygastrids, although they show substantial potential for more accurate definition of genera. A preliminary cladistic analysis of 14 ovipositor characters supports the monophyly of five clades that correspond to the Scelionini s. l., the Scelionidae (minus the Sparasionini sensu stricto), the Sparasionini s. str., the Platygastridae, and the Sparasioriini s. str. + Platygastridae. Overall, results from this study will provide baseline information on the ovipositor system as a prelude to a more complete phylogenetic analysis of the superfamily including external morphological characters. Although no new classification for the Scelionidae and Platygastridae is proposed, their higher-level taxonomy is reviewed and discussed and cases identified where, on the basis of ovipositor morphology, taxa (tribes and/or genera) apparently form monophyletic groups, and where taxa are misplaced. Finally, the status of the major higher-level groups within the superfamily is discussed, as is the available evidence to support their monophyly.


1994 ◽  
Vol 7 (1) ◽  
pp. 57 ◽  
Author(s):  
JE Rodman ◽  
KG Karol ◽  
RA PRice ◽  
E Conti ◽  
KJ Systma

Nucleotide sequences (1452 base pairs) from the chloroplast gene for the large subunit of ribulose-1, 5-bisphosphate carboxylase/oxygenase (rbcL) were obtained for three species of Gyrostemon and Tersonia of the Australian endemic family Gyrostemonaceae. Phylogenetic reconstruction based on parsimony robustly allies the family with other mustard oil-producing plants in Dahlgren's expanded order Capparales. Within this clade, Gyrostemonaceae are the sister group to Resedaceae, but the sequence data provide only weak support for this particular linkage. The new molecular data corroborate recent embryological and ultrastructural findings for Gyrosternonaceae and confirm results from Rodman's cladistic analysis of traditional morphological features of these plants. The rbcL sequences for the three species of Gyrostemonaceae were consistent in possessing a stop codon ending at position 1452, well beyond the usual 1428 site for many dicots. An extended terminus for the rbcL gene appears to be a marker within the expanded order Capparales for a derived clade that comprises the traditional core Capparales (Brassicaceae, Capparaceae, Resedaceae and Tovariaceae) plus Gyrostemonaceae, the sister taxa Batis + Koeberlinia, and Limnanthaceae.


2015 ◽  
Vol 29 (6) ◽  
pp. 591 ◽  
Author(s):  
Marco Gebiola ◽  
Antonio P. Garonna ◽  
Umberto Bernardo ◽  
Sergey A. Belokobylskij

Doryctinae (Hymenoptera : Braconidae) is a large and diverse subfamily of parasitic wasps that has received much attention recently, with new species and genera described and phylogenies based on morphological and/or molecular data that have improved higher-level classification and species delimitation. However, the status of several genera is still unresolved, if not controversial. Here we focus on two related groups of such genera, Dendrosoter Wesmael–Caenopachys Foerster and Ecphylus Foerster–Sycosoter Picard & Lichtenstein. We integrated morphological and molecular (COI and 28S–D2 genes) evidence to highlight, by phylogenetic analyses (maximum likelihood and Bayesian) and a posteriori morphological examination, previously overlooked variation, which is here illustrated and discussed. Monophyly of Dendrosoter and Caenopachys and the presence of synapomorphic morphological characters support synonymy of Caenopachys under Dendrosoter. Low genetic differentiation and high variability for putatively diagnostic morphological characters found in both C. hartigii (Ratzeburg) and C. caenopachoides (Ruschka) supports synonymy of D. caenopachoides under D. hartigii, syn. nov. Morphological and molecular evidence together also indicate independent generic status for Sycosoter, stat. rev., which is here resurrected. This work represents a further advancement in the framework of the ongoing effort to improve systematics and classification of the subfamily Doryctinae.


Phytotaxa ◽  
2014 ◽  
Vol 162 (4) ◽  
pp. 198 ◽  
Author(s):  
Hao Yan-Jia ◽  
Qin Jiao ◽  
Yang Zhu-Liang

A new genus in Physalacriaceae, Cibaomyces, typified by C. glutinis, is described using morphological and molecular evidence. Cibaomyces is morphologically characterized by the combination of the following characters: basidioma small to medium-sized, collybioid to tricholomatoid; pileus viscid; hymenophore sinuate to subdecurrent, relatively distant, with brown lamellar edge; stipe sticky and densely covered with felted squamules; basidiospores thin-walled, ornamented with finger-like projections; cystidia nearly cylindrical, thin-walled, often heavily incrusted. Molecular phylogenetic analyses using DNA nucleotide sequences of the internal transcribed spacer region and the large subunit nuclear ribosomal RNA loci indicated that Cibaomyces was related to Gloiocephala, Laccariopsis and Rhizomarasmius. A description, line drawings, phylogenetic placement and comparison with allied taxa are presented. 


Nematology ◽  
2015 ◽  
Vol 17 (5) ◽  
pp. 567-580
Author(s):  
Weimin Ye ◽  
Qing Yu ◽  
Natsumi Kanzaki ◽  
Paul R. Adams ◽  
Yasmin J. Cardoza

During a survey of entomopathogenic nematodes in North Carolina, USA, aPristionchusspecies was recovered using theGalleriabait method. Morphological studies with light microscopy and scanning electron microscopy, mating tests with reference strains, as well as molecular analyses of the near-full-length small subunit rRNA gene (18S) and D2-D3 expansion segments of the large subunit rRNA gene (28S) identified this isolate asPristionchus aerivorus. ExposedGallerialarvae were killed within 48 h and high numbers of nematodes were recovered from the cadavers about 5 days later. Preliminary tests revealed that this nematode is capable of infecting at least two other insect species (Helicoverpa zeaandTenebrio molitor) under laboratory conditions. The status of the genusChroniodiplogasteris discussed and confirmed as a junior synonym ofPristionchusbased on morphological observation and molecular phylogenetic analysis.


MycoKeys ◽  
2021 ◽  
Vol 85 ◽  
pp. 1-30
Author(s):  
Min Qiao ◽  
Hua Zheng ◽  
Ji-Shu Guo ◽  
Rafael F. Castañeda-Ruiz ◽  
Jian-Ping Xu ◽  
...  

The family Microthyriaceae is represented by relatively few mycelial cultures and DNA sequences; as a result, the taxonomy and classification of this group of organisms remain poorly understood. During the investigation of the diversity of aquatic hyphomycetes from southern China, several isolates were collected. These isolates were cultured and sequenced and a BLAST search of its LSU sequences against data in GenBank revealed that the closest related taxa are in the genus Microthyrium. Phylogenetic analyses, based on the combined sequence data from the internal transcribed spacers (ITS) and the large subunit (LSU), revealed that these isolates represent eight new taxa in Microthyriaceae, including two new genera, Antidactylariagen. nov. and Isthmomycesgen. nov. and six new species, Antidactylaria minifimbriatasp. nov., Isthmomyces oxysporussp. nov., I. dissimilissp. nov., I. macrosporussp. nov., Triscelophorus anisopterioideussp. nov. and T. sinensissp. nov. These new taxa are described, illustrated for their morphologies and compared with similar taxa. In addition, two new combinations are proposed in this family.


2004 ◽  
Vol 17 (3) ◽  
pp. 241 ◽  
Author(s):  
M. Galbany-Casals ◽  
N. Garcia-Jacas ◽  
A. Susanna ◽  
L. Sáez ◽  
C. Benedí

The internal transcribed spacers ITS1 and ITS2 of the nuclear rDNA were sequenced for 41 Helichrysum species (Gnaphalieae), focusing on the Mediterranean group of species, together with eight representatives of other genera of the Gnaphalieae, in order to check the hypothesised monophyly of the Mediterranean Helichrysum group and the correspondence of the sequence data with its traditional sectional classification. The cladistic analysis of sequence data supports monophyly of the Mediterranean Helichrysum excluding H. frigidum and H. montelinasanum. The traditional classification of the Mediterranean species into two sections, Helichrysum and Virginea, is not supported, whereas a group constituted by species from the west Mediterranean area is shown as a moderately supported monophyletic clade in the strict consensus tree. Other results also show and confirm the complexity, still not satisfactorily resolved, of the Helichrysum generic delimitation: Pseudognaphalium luteoalbum appears merged in Helichrysum whereas Helichrysum dasyanthum appears more related to Anaxeton laeve than to any Helichrysum species.


2021 ◽  
pp. 60-61
Author(s):  
Alla Borisovna Didenko

The article examines the phenomenon of the interpretation of a literary text, taking into account the proper linguistic and linguodidactic aspects. This problem area acquires special significance at the stage of the formation of a linguistic personality and its linguocultural identification. This is largely because the ability to interpret the text ensures the development of at least the cognitive base and the centre of the cultural space in a particular linguoculture. The article clarifies the status of agnonyms as a class of units and the specifics of their functioning in a literary text, offering a comprehensive classification of units of this class.


2010 ◽  
Vol 41 (4) ◽  
pp. 303-316 ◽  
Author(s):  
David Lightfoot ◽  
Kelly Miller ◽  
William Edelman

AbstractThe phylogenetic placement of the North American band-winged grasshopper Shotwellia isleta (Gurney 1940) (Orthoptera: Acrididae: Oedipodinae) has been investigated. This rare and unique species of grasshopper belongs to a monotypic genus known only from a few isolated locations in the Chihuahuan Desert of Mexico and New Mexico, USA. The taxonomic status of Shotwellia has been uncertain and historically classified in very different ways relative to other genera. We conducted the first molecular phylogenetic cladistic analysis of Shotwellia and of the Chortophaga (Saussure) genus group in which it is currently classified, using three mitochondrial genes (16S, 12S and cytochrome c oxidase II), 14 morphological characters and two behavioral characters. Our analysis supports the current monotypic status of the genus Shotwellia within the Chortophaga genus group and indicates that Shotwellia is sister to the other genera in that group. Shotwellia isleta is a species of conservation concern, and our field sampling indicates that it is a rare specialist of freshwater ephemeral desert lake beds that are being impacted by human activity. Understanding the phylogeny of S. isleta provides a basis from which biological, evolutionary and conservation inferences can be made.


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