Patterns of post-glacial colonization by western redcedar (Thuja plicata, Cupressaceae) as revealed by microsatellite markers

Botany ◽  
2008 ◽  
Vol 86 (2) ◽  
pp. 194-203 ◽  
Author(s):  
Lisa M. O’Connell ◽  
Kermit Ritland ◽  
Stacey Lee Thompson

As knowledge of historical migration in response to climatic change allows insight into the dynamic nature of range shifts, patterns of post-glacial colonization were evaluated for the western redcedar ( Thuja plicata Donn ex D. Don). We sampled and genotyped 620 trees from 23 populations across its range, including disjunct coastal and interior mesic sites. Genetic variation at eight microsatellite loci (mean alleles/locus = 10.30, mean expected heterozygosity = 0.755) was much higher than previous studies involving other markers, and inbreeding coefficients were predominantly positive (mean = 0.110). The two southernmost populations showed greatest genetic distances, while remaining populations clustered into three distinct geographic groups, comprising northern–coastal, central, and southern–interior populations, respectively. Genetic diversity decreased with latitude, while genetic and geographic distances were strongly correlated (r = 0.788). Our findings are consistent with independent routes of relatively recent colonization from one major refugium, located south of the glacial maximum, rather than ancient vicariant events. Regional bottlenecks, detected in the south of the range, may have resulted from local extinctions as the range of western redcedar advanced northward. Combined with inbreeding and the evolution of inbreeding tolerance, this may have promoted homozygosity for most classes of genetic markers as observed in other studies of this species.

2009 ◽  
Vol 55 (5) ◽  
pp. 578-586 ◽  
Author(s):  
Russell J. Chedgy ◽  
Young Woon Lim ◽  
Colette Breuil

We tested the effect of leaching on the concentration of western redcedar (WRC; Thuja plicata Donn ex D. Don) heartwood extractives that are known to exhibit antimicrobial activity and correlated this with fungal growth and decay. We assessed the extractive tolerance of the following fungal species: Acanthophysium lividocaeruleum , Coniophora puteana , Heterobasidion annosum , Pachnocybe ferruginea , Phellinus sulphurascens , and Phellinus weirii by measuring their growth rate (mm/day) on media with or without WRC leachate. These data were correlated with the ability of the fungal species to grow on and decay leached versus nonleached WRC. We used an ergosterol assay to estimate growth and a standard soil-block test to assess decay. We estimated that leaching reduced the concentration of 5 major extractives: (–)-plicatic acid, β-thujaplicin, γ-thujaplicin, β-thujaplicinol, and thujic acid by ~80%. Phellinus sulphurascens exhibited the lowest extractive-tolerance in vitro, grew poorly on and caused minimal decay in nonleached WRC, but it grew well on and decayed pine and leached WRC. Coniophora puteana, H. annosum, and P. weirii displayed moderate to high tolerance to leachate, grew on and caused decay in nonleached as well as leached WRC, but their growth and decay were always greatest on leached WRC and pine, suggesting that leaching enhances decay by these fungi. Acanthophysium lividocaeruleum and Pachnocybe ferruginea exhibited high extractive-tolerance. Whereas A. lividocaeruleum clearly caused decay on all types of wood, no decay was observed with Pachnocybe ferruginea, which grew very slowly in the different wood species, and it may or may not be able to decay wood.


2007 ◽  
Vol 22 (4) ◽  
pp. 297-306
Author(s):  
J.H. Russell ◽  
O. Hak

Abstract Western redcedar (Thuja plicata Donn) foliar-applied gibberellin A3 (GA3) induction trials were performed over a 4-year period at a number of different seed orchards in coastal British Columbia. The effects of GA3 timing, concentration, and frequency on male and female strobilus production, as well as timing on seed quality, were studied. Male and female strobili were induced over the complete span of shoot elongation from May to August, indicative of a less-precise induction period than species in the Pinaceae family. Female strobilus production was correlated with shoot increment, such that maximum cone production was associated with maximum shoot elongation. In addition, seed quality decreased with decreasing shoot increments in August. For operational efficiency, a one-time foliar application of 200 mg/l GA3 is sufficient for adequate female strobilus production. To increase the female-to-male strobilus ratio, a two-time foliar application of GA3 mid-May and mid-July, concentrating on vigorous shoots, is recommended. Results are discussed in relation to seed orchard management techniques that may potentially influence selfing rates.


2001 ◽  
Vol 79 (6) ◽  
pp. 753-756 ◽  
Author(s):  
Lisa M O'Connell ◽  
Frédérique Viard ◽  
John Russell ◽  
Kermit Ritland

Outcrossing rates and the correlation of paternity were estimated in six natural populations of western redcedar (Thuja plicata Donn. ex D. Don) in southwestern British Columbia. Over 3000 offspring were assayed, as progeny arrays, for the only sufficiently polymorphic isozyme locus in this species, glucose-6-phosphate dehydrogenase. Estimates of population outcrossing rates ranged from 0.173 to 1.257 and averaged 0.715 ± 0.045 (mean ± SD). Estimates of the correlation of paternity generally did not differ from zero. Six of the seven outcrossing estimates (one population was surveyed in two consecutive years) were higher than a previous seed orchard study. However, these outcrossing rates are still lower than those estimated for most other species of conifers. Population outcrossing rates also showed wide variation, and this variation is discussed in terms of ecological and phenological differences among populations.Key words: Cupressaceae, conifers, isozymes, outcrossing rate, inbreeding.


2008 ◽  
Vol 59 (4) ◽  
pp. 765-777 ◽  
Author(s):  
Victor V. Terskikh ◽  
Ying Zeng ◽  
J. Allan Feurtado ◽  
Michael Giblin ◽  
Suzanne R. Abrams ◽  
...  

1967 ◽  
Vol 45 (3) ◽  
pp. 305-309 ◽  
Author(s):  
Harold MacLean ◽  
Koji Murakami

Proof of structure is presented for another lignan of the thujaplicatin series, 2,3-dihydroxy-2-(4″-hydroxy-3″,5″-dimethoxybenzyl)-3-(4′-hydroxy-3′-methoxybenzyl)-butyrolactone (I) (dihydroxythujaplicatin methyl ether). Analytical and spectral (ultraviolet, infrared, and nuclear magnetic resonance) data on derivatives and degradation products, in addition to the parent compound, are presented.


2011 ◽  
Vol 72 (2) ◽  
pp. 115-119 ◽  
Author(s):  
Leon Mejnartowicz

Twenty-eight isozymic loci were studied in the Beskid Mts., in four populations of common silver-fir (<em>Abies alba</em>): one in Beskid Makowski (BM) and three populations in Beskid Sądecki (BS). Their genetic variation and diversity were analyzed, and Nei's genetic distances between the populations were calculated. The results show that the geographical distance between the BM population and the three BS populations is reflected in genetic distances. The BM population is clearly distinct from the others. It has the lowest genetic diversity (<em>I</em> = <em>0.42</em>), percentage of polymorphic loci <em>(%PoL </em>= <em>64.29</em>) and number of rare alleles (<em>NoRa </em>= <em>5</em>). Besides, the BM population has the highest observed heterozygosity (<em>Ho </em>= <em>0.291</em>), which exceeds the expected heterozygosity (<em>He </em>= <em>0.254</em>), estimated on the basis of the Hardy-Weinberg Principle. On the contrary, BS populations are in the state of equilibrium, which is manifested, in similar values of <em>He </em>= <em>0.262 </em>and <em>Ho </em>= <em>0.264</em>.


2021 ◽  
Author(s):  
Ronald J Yurko ◽  
Kathryn Roeder ◽  
Bernie Devlin ◽  
Max G'Sell

In genome-wide association studies (GWAS), it has become commonplace to test millions of SNPs for phenotypic association. Gene-based testing can improve power to detect weak signal by reducing multiple testing and pooling signal strength. While such tests account for linkage disequilibrium (LD) structure of SNP alleles within each gene, current approaches do not capture LD of SNPs falling in different nearby genes, which can induce correlation of gene-based test statistics. We introduce an algorithm to account for this correlation. When a gene's test statistic is independent of others, it is assessed separately; when test statistics for nearby genes are strongly correlated, their SNPs are agglomerated and tested as a locus. To provide insight into SNPs and genes driving association within loci, we develop an interactive visualization tool to explore localized signal. We demonstrate our approach in the context of weakly powered GWAS for autism spectrum disorder, which is contrasted to more highly powered GWAS for schizophrenia and educational attainment. To increase power for these analyses, especially those for autism, we use adaptive p-value thresholding (AdaPT), guided by high-dimensional metadata modeled with gradient boosted trees, highlighting when and how it can be most useful. Notably our workflow is based on summary statistics.


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