Molecular systematics of Old World Apioideae (Apiaceae): relationships among some members of tribe Peucedaneae sensu lato, the placement of several island-endemic species, and resolution within the apioid superclade

2000 ◽  
Vol 78 (4) ◽  
pp. 506-528 ◽  
Author(s):  
Stephen R Downie ◽  
Mark F Watson ◽  
Krzysztof Spalik ◽  
Deborah S Katz-Downie
Keyword(s):  
Endemic Species ◽  
Nuclear Ribosomal Dna ◽  
Apium Graveolens ◽  
Molecular Evidence ◽  
Rps16 Intron ◽  
Old World ◽  
Island Endemic ◽  
Rdna Its ◽  
Heracleum Candicans ◽  
Endemic Genera

Comparative sequencing of the two internal transcribed spacer regions of nuclear ribosomal DNA was carried out to examine evolutionary relationships among representatives of Old World Apiaceae (Umbelliferae) subfamily Apioideae. Emphasis was placed on delimiting groups within the previously designated apioid superclade and clarifying relationships within and among the peucedanoid genera Angelica, Ferula, Heracleum, and Peucedanum. These spacer data, and those obtained from the chloroplast rps16 intron for a subset of the taxa, also enabled hypotheses on the phylogenetic placement of several narrowly distributed endemic species. The monophyly of Drude's tribe Echinophoreae is confirmed and it is sister to the Socotran endemic genera Nirarathamnos and Rughidia; the Balearic Islands endemic genus Naufraga allies with Apium graveolens; tribes Careae and Pyramidoptereae are recognized formally to be the previously designated clades "Aegopodium" and "Crithmum"; and tribes Oenantheae and Scandiceae are each expanded to include two species of Apium, previously attributable to Helosciadium, and four species of Ferula, respectively. Within the apioid superclade, five major lineages are recognized that are consistent with all available molecular evidence: tribe Echinophoreae, the clades "Pimpinella" and "Heracleum," and the more narrowly circumscribed clades "Angelica" and "Apium." Angelica and Ferula each comprise at least two lineages; Heracleum is polyphyletic if Heracleum candicans is retained in the genus; and Peucedanum is distributed in three well-separated clades with some species allied with those species of Angelica referred to Xanthogalum.Key words: Apiaceae subfamily Apioideae, nuclear rDNA ITS, chloroplast rps16 intron, Umbelliferae.

ITS sequence variation supports the hybrid origin of Malus toringoides Hughes

2007 ◽  
Vol 85 (7) ◽  
pp. 659-666 ◽  
Author(s):  
Ting-Ting Feng ◽  
Zhi-Qin Zhou ◽  
Jian-Min Tang ◽  
Ming-Hao Cheng ◽  
Shi-Liang Zhou
Keyword(s):  
Sequence Variation ◽  
Gene Tree ◽  
Natural Populations ◽  
Its Sequences ◽  
Nuclear Ribosomal Dna ◽  
Hybrid Origin ◽  
Putative Hybrid ◽  
Molecular Evidence ◽  
Sequence Information ◽  
Aflp Data

Malus toringoides (Rehd.) Hughes was suggested to have originated from hybridization between Malus transitoria Schneid. and Malus kansuensis Rehd., followed by repeated backcrossing to one of the putative parents. In the present study, the sequence information of the internal transcribed spacer (ITS) of nuclear ribosomal DNA (nrDNA) was used to re-examine the origin of this species. A total of 69 accessions from three natural populations (Maerkang, Xiaba and Kehe, Aba Autonomous Region, Sichuan, China) of M. toringoides and 10 accessions of its putative parents were analyzed. Using Malus angustifolia (Ait.) Michx., Malus ioensis (Wood) Britt. and Malus doumeri Chev. as outgroups, our phylogenetic analysis of the ITS sequences of M. toringoides and its putative parents showed that M. toringoides was not monophyletic, and two different types of ITS sequences which were obtained from each of the six accessions of M. toringoides were found to have clustered separately with those of the two putative parent species on the gene tree. A comparison of the sequence variation between M. toringoides and its putative parents revealed an additive variation pattern of ITS sequences in the putative hybrid species. These results are consistent with the previous morphological and amplified fragment length polymorphism (AFLP) data which suggested that M. toringoides was of hybrid origin. Our ITS data provide new molecular evidence for the hybrid origin hypothesis of M. toringoides and these results are of great importance for future study on hybridization, polyploid speciation and evolution of the genus Malus Miller.

scholarly journals A numerical analysis of Ephedra L. based on reproductive features

2013 ◽  
Vol 20 (1) ◽  
pp. 51-60 ◽  
Author(s):  
Yong Yang
Keyword(s):  
Numerical Analysis ◽  
Seed Dispersal ◽  
Endemic Species ◽  
Reproductive Organs ◽  
Old World ◽  
Geographic Ranges ◽  
Dispersal Syndromes ◽  
Plant Taxon ◽  
Seed Dispersal Syndromes

A numerical analysis of Ephedra L. was conducted based on 29 characters of reproductive organs. The results indicate that species are not grouped according to their geographic ranges, sect. Alatae is in one group, sect. Asarca excluding E. cutleri and E. viridis consists of a Eu-asarca group while sect. Ephedra plus E. cutleri and E. viridis of the traditional sect. Asarca make up a third expanded Ephedra group. The Old World sect. Monospermae including E. rhytidosperma, E. equisetina, E. nebrodensis, E. monosperma and E. procera was rediscovered in this study while those Himalayan endemic species (e.g. E. minuta, E. likiangensis, E. saxatilis, E. dawuensis and E. gerardiana) used to be grouped in the Old World sect. Monospermae are clustered together with sect. Scandentes including E. foeminea, E. ciliata, E. altissima and E. fragilis. This study further confirms that the adaptive seed dispersal syndromes of sect. Asarca have originated for not only once. Some new features are introduced as related to dispersal, e.g. weight and size of seeds, and nature and thickness of the outer envelope.DOI: http://dx.doi.org/10.3329/bjpt.v20i1.15464Bangladesh J. Plant Taxon. 20(1): 51-60, 2013 (June) 

scholarly journals Morphological and molecular evidence for the occurrence of Itajahya galericulata (Basidiomycota, Phallales) in India

2018 ◽  
Vol 63 (2) ◽  
pp. 39-44
Author(s):  
Ravi S. Patel ◽  
Ajit M. Vasava ◽  
Kishore S. Rajput
Keyword(s):  
South America ◽  
Phylogenetic Analyses ◽  
Its Sequences ◽  
Molecular Evidence ◽  
Nuclear Rdna ◽  
Gujarat State ◽  
Rdna Its ◽  
Molecular Phylogenetic ◽  
Rdna Its Sequences ◽  
The City

AbstractItajahya galericulata (Phallales, Phallaceae) was previously reported from several countries in South America and Africa. Recently we found I. galericulata in the city of Vadodara, Gujarat State, India. To verify its identity we studied its morphology and performed molecular phylogenetic analyses using nuclear rDNA LSU and mitochondrial ATP6 loci. Here we also provide nuclear rDNA ITS sequences for the Indian collection, since up to now no sequences of this region have been available for I. galericulata in GenBank. This study furnishes the first evidence for the occurrence of I. galericulata in India and in Asia as a whole.

Phylogenetics of the mycoheterotrophic genus Thismia (Thismiaceae: Dioscoreales) with a focus on the Old World taxa: delineation of novel natural groups and insights into the evolution of morphological traits

2020 ◽  
Vol 193 (3) ◽  
pp. 287-315 ◽  
Author(s):  
Ekaterina A Shepeleva ◽  
Mikhail I Schelkunov ◽  
Michal Hroneš ◽  
Michal Sochor ◽  
Martin Dančák ◽  
...  
Keyword(s):  
Significant Proportion ◽  
Morphological Diversity ◽  
Taxonomic Revision ◽  
Morphological Characters ◽  
Morphological Description ◽  
Molecular Evidence ◽  
Ancestral State ◽  
Old World ◽  
Molecular Phylogenetic ◽  
Floral Characters

Abstract Thismia is a genus of > 80 mycoheterotrophic species characterized by a peculiar appearance and complex floral morphology. A significant proportion of the species and morphological diversity of Thismia has only been uncovered in the past two decades, and new discoveries continue to be made. Given that many new data have recently become available, and the most comprehensive taxonomic revision of the genus from 1938 addresses less than half of the currently known species, previous hypotheses for species relationships and infrageneric taxonomic classification in Thismia was in need of review. Extensive molecular phylogenetic studies of Thismia at the genus level have never been presented. We investigate the phylogenetic relationships of 41 species (and one variety) of Thismia from the Old World. Our study comprises 68 specimens (for 28 of which the data were newly generated), including outgroup taxa broadly representing Thismiaceae (= Burmanniaceae p.p. sensuAPG IV, 2016), and is based on two nuclear and one mitochondrial marker. We use maximum likelihood and Bayesian inference to infer relationships among the taxa. We also constructed a morphological dataset of 12 mostly floral characters, comparing these characters to hypotheses based on molecular evidence to identify putative synapomorphies for major clades and to discuss hypotheses regarding the evolution of structural traits in the genus. Our analyses indicate that the majority of currently accepted infrageneric taxa of Thismia are polyphyletic. We find support for the monophyly of the Old World group, in which we recognize five well-supported lineages (clades); the only New World species studied appears to be related to the Neotropical genus Tiputinia. Ancestral state reconstructions demonstrate that the evolution of most morphological characters was homoplastic, but we identify characters that provide each of the five clades of Old World Thismia with a unique morphological description. The geographical distribution of the species under study is also shown to be consistent with the major clades. Our investigation provides a phylogenetic basis for the development of a novel sectional classification of Thismia reflecting morphological and geographical traits.

Towards a new classification of tribe Stachydeae (Lamiaceae): naming clades using molecular evidence

2019 ◽  
Vol 190 (4) ◽  
pp. 345-358 ◽  
Author(s):  
Yasaman Salmaki ◽  
Günther Heubl ◽  
Maximilian Weigend
Keyword(s):  
Ribosomal Dna ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Nuclear Ribosomal Dna ◽  
Molecular Evidence ◽  
New Classification ◽  
Formal Classification ◽  
Phylogenetic Nomenclature

AbstractStachydeae, comprising c. 470 species, are one of the most diverse and taxonomically puzzling groups in Lamioideae. In the present study, the phylogenetic relationships in the Eurystachys clade (a phylogenetic name for all genera attributed to Stachydeae except Melittis) were reconstructed utilizing nuclear ribosomal DNA sequences (nrETS, 5S-NTS) from 148 accessions in 12 genera. Our phylogenetic results recovered Stachys as paraphyletic with numerous traditionally recognized genera nested in it. A broadly defined Eurystachys clade, however, was monophyletic. Unlike previous studies, the present study was able to resolve the group into 12 well-supported clades, named here as (1) Eriostomum, (2) Stachys, (3) Prasium, (4) Setifolia, (5) Distantes, (6) Burgsdorfia, (7) Hesiodia, (8) Empedoclia, (9) Sideritis, (10) Marrubiastrum, (11) Swainsoniana and (12) Olisia. These 12 clades were formally named in a phylogenetic nomenclature for the Eurystachys clade. Several infrageneric units were retrieved as monophyletic, namely Sideritis sections Burgsdorfia, Empedoclia and Hesiodia, Sideritis subgenus Marrubiastrum and Stachys sections Eriostomum (including Stachys section Mucronata) and Setifolia. The findings of this study also provide the basis for a future formal classification, with two options: (1) splitting of the Eurystachys clade into 12 monophyletic genera, all of them based on pre-existing genus names and redefined to encompass additional taxa, but without clear morphological apomorphies; or (2) lumping of all segregates into a broadly defined Stachys, including widely recognized and well-defined segregates such as Prasium and Sideritis.

scholarly journals El conocimiento florístico actual del Noroeste de México: desarrollo, recuento y análisis del endemismo

2018 ◽  
Vol 96 (3) ◽  
pp. 555
Author(s):  
José Luis León de la Luz ◽  
Jon Paul Rebman ◽  
Thomas R. Van Devender ◽  
José Jesús Sánchez-Escalante ◽  
José Delgadillo-Rodríguez ◽  
...  
Keyword(s):  
Climate Change ◽  
Geographical Distribution ◽  
Endemic Species ◽  
Baja California ◽  
Species Level ◽  
Baja California Sur ◽  
Structural Composition ◽  
Nw Mexico ◽  
Species Survival ◽  
Endemic Genera

<p class="Pa1"><strong>Background</strong>: Floristic knowledge of Northwestern (NW) Mexico was mainly carried out by American botanists until the first half of XX century.</p><p class="Pa1"><strong>Question</strong>: Do the ancient and recent botanical explorations carried out in the study area, are already enough to document in a conclusive way both the floristic and structural composition?</p><p class="Pa1"><strong>Methods</strong>: The authors are botanists and managers of the herbaria included in the floristic compilation (BCMEX, HCIB, SD, and USON), each herbarium has been devoted to document the flora of the states of NW Mexico in the last three decades. The floristic information was obtained mainly of the herbaria databases (around 110,000 entries), historic bibliographic information and recent collects from the same authors. The databases consulted are composed by 27,117 collect sites.</p><p class="Pa1"><strong>Results</strong>: The final database obtained consists of 5,865 taxa at the species level and intraspecific categories. By state, Sonora is the most biodiverse with 3,762 taxa, Baja California has 2,583 and Baja California Sur has 2,070. The Mexican NW is relatively poor in total number of species, but the number of endemic taxa is high. Within this region there are 941 endemic species, where 294, 391, and 79 correspond to the states of Baja California, Baja California Sur, and Sonora, respectively; in addition, there are 177 endemic species shared among these three states. The NW region also has 18 endemic genera, included in 10 families.</p><strong>Conclusions</strong>: As result of this review, there is excellent floristic knowledge background for NW Mexico, but there are still geographic areas still inaccessible, which includes all kind of topography, that explored could increase the total flora and endemism rate. Presently, the climate change put into risk the species survival, and hence it is a priority that conservation programs be established especially in terms of endemic species, since many of them have a restricted geographical distribution.

scholarly journals Phylogenetic Analysis and Molecular Diversity of Capsicum Based on rDNA-ITS Region

Horticulturae ◽  
2020 ◽  
Vol 6 (4) ◽  
pp. 87
Author(s):  
Kumpei Shiragaki ◽  
Shuji Yokoi ◽  
Takahiro Tezuka
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Wild Species ◽  
Morphological Characteristics ◽  
Its Region ◽  
Internal Transcribed Spacers ◽  
Nuclear Ribosomal Dna ◽  
Rdna Its ◽  
Rdna Its Region ◽  
Genus Capsicum

The genus Capsicum is comprised of 5 domesticated and more than 30 wild species. The region of nuclear ribosomal DNA internal transcribed spacers (rDNA-ITS) has widely been used for species identification, but has rarely been used in Capsicum. In this study, the evaluation of genetic diversity and a phylogenetic analysis were conducted using rDNA-ITS of 28 Capsicum accessions, including five domesticated and two wild species. We surveyed six conventional keys of domesticated species and another five traits in Capsicum accessions. Specific morphological characteristics were found in C. annuum, C. baccatum, and C.pubescens. Three subclones of each accession were sequenced, and rDNA-ITS polymorphisms were detected in all accessions excluding C. annuum, suggesting that incomplete concerted evolution occurred in rDNA-ITS of Capsicum. The genetic diversity was evaluated using nucleotide polymorphism and diversity. C. annuum had the lowest genetic diversity of all species in this study. The phylogenetic tree formed a species-specific clade for C. annuum, C. baccatum, and C. pubescens. The C. chinense clade existed in the C. frutescens clade, implying that it was a cultivated variant of C. frutescens. C. chacoense likely belonged to the C. baccatum complex according to its morphologic and genetic features. This study indicated that the rDNA-ITS region can be used for simple identification of domesticated Capsicum species.

Sign in / Sign up

Export Citation Format

Share Document