scholarly journals Male‐specific Y‐chromosomal regions in waterhemp ( Amaranthus tuberculatus ) and Palmer amaranth ( Amaranthus palmeri )

2020 ◽  
Author(s):  
Jacob S. Montgomery ◽  
Darci A. Giacomini ◽  
Detlef Weigel ◽  
Patrick J. Tranel
Keyword(s):  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Amaranthus Tuberculatus ◽  
Male Specific

scholarly journals Sex-specific markers for waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Weed Science ◽  
2019 ◽  
Vol 67 (4) ◽  
pp. 412-418 ◽  
Author(s):  
Jacob S. Montgomery ◽  
Ahmed Sadeque ◽  
Darci A. Giacomini ◽  
Patrick J. Brown ◽  
Patrick J. Tranel
Keyword(s):  
Crop Production ◽  
Genetic Basis ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Data Set ◽  
Amaranthus Tuberculatus ◽  
Primer Sets ◽  
Male Specific ◽  
Specific Sequences

AbstractWaterhemp [Amaranthus tuberculatus (Moq.) J. D. Sauer] and Palmer amaranth (Amaranthus palmeri S. Watson) are troublesome weeds of row-crop production in the United States. Their dioecious reproductive systems ensure outcrossing, facilitating rapid evolution and distribution of resistances to multiple herbicides. Little is known, however, about the genetic basis of dioecy in Amaranthus species. In this work, we use restriction site–associated DNA sequencing (RAD-Seq) to investigate the genetic basis of sex determination in A. tuberculatus and A. palmeri. For each species, approximately 200 plants of each sex were sampled and used to create RAD-Seq libraries. The resulting libraries were separately bar-coded and then pooled for sequencing with the Illumina platform, yielding millions of 64-bp reads. These reads were analyzed to identify sex-specific and sex-biased sequences. We identified 345 male-specific sequences from the A. palmeri data set and 2,754 male-specific sequences in A. tuberculatus. An unexpected 723 female-specific sequences were identified in a subset of the A. tuberculatus females; subsequent research, however, indicated female specificity of these markers was limited to the population from which they were identified. Primer sets designed to specifically amplify male-specific sequences were tested for accuracy on multiple, geographically distinct populations of A. tuberculatus and A. palmeri, as well as other Amaranthus species. Two primer sets for A. palmeri and four primer sets for A. tuberculatus were each able to distinguish between male and female plants with at least 95% accuracy. In the near term, sex-specific markers will be useful to the A. tuberculatus and A. palmeri research communities (e.g., to predict sex for crossing experiments). In the long-term, this research will provide the foundational tools for detailed investigations into the molecular biology and evolution of dioecy in weedy Amaranthus species.

scholarly journals Late-season surveys to document seed rain potential of Palmer amaranth (Amaranthus palmeri) and waterhemp (Amaranthus tuberculatus) in Texas cotton

PLoS ONE ◽  
2020 ◽  
Vol 15 (6) ◽  
pp. e0226054
Author(s):  
Kaisa Werner ◽  
Debalin Sarangi ◽  
Scott Nolte ◽  
Peter Dotray ◽  
Muthukumar Bagavathiannan
Keyword(s):  
Seed Rain ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Late Season ◽  
Amaranthus Tuberculatus

scholarly journals Comparing responses of sensitive and resistant populations of Palmer amaranth (Amaranthus palmeri) and waterhemp (Amaranthus tuberculatus var. rudis) to PPO inhibitors

2019 ◽  
Vol 34 (1) ◽  
pp. 140-146 ◽  
Author(s):  
Kathryn J. Lillie ◽  
Darci A. Giacomini ◽  
Patrick J. Tranel
Keyword(s):  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Resistant Population ◽  
Evolution Of Resistance ◽  
Amaranthus Tuberculatus ◽  
Inhibitor Resistance ◽  
Dose Responses ◽  
Sensitive Population ◽  
Respective Species ◽  
Better Than

AbstractResistance to protoporphyrinogen oxidase (PPO) inhibitors was first observed in waterhemp in 2001 and was conferred by the deletion of a glycine residue at the 210th position (ΔGly-210) of the PPO enzyme. PPO-inhibitor resistance in Palmer amaranth was first observed in 2011, 10 years later. The objectives of this study were to directly compare PPO inhibitor responses in plants of both species with or without the ΔGly-210 mutation. Using greenhouse experiments, early (EPOST) and late (LPOST) postemergence dose responses using lactofen and fomesafen, and preemergence (PRE) dose responses using fomesafen and flumioxazin, were obtained for a sensitive and resistant population each of waterhemp and Palmer amaranth. An additional spray study confirmed each sensitive population used in the dose responses was representative of its respective species, with regards to PPO-inhibitor sensitivity. When treated at either POST timing, Palmer amaranth was more tolerant than waterhemp, and the ΔGly-210 mutation provided greater resistance in Palmer amaranth (48-fold to >3,440-fold, depending on timing and herbicide) than in waterhemp (31-fold to 123-fold). The level of tolerance in Palmer amaranth was striking; the sensitive Palmer amaranth population treated LPOST survived as well or better than the resistant waterhemp population treated EPOST. With PRE applications, response differences both between species and between resistant and sensitive populations generally were less pronounced, relative to POST applications. Collectively, this research indicates Palmer amaranth tolerance to POST-applied PPO inhibitors could have initially slowed (relative to waterhemp) evolution of resistance to these herbicides, and resistant and sensitive populations of both species are more likely to be effectively controlled with PRE rather than POST applications.

scholarly journals Seedbank Persistence of Palmer Amaranth (Amaranthus palmeri) and Waterhemp (Amaranthus tuberculatus) across Diverse Geographical Regions in the United States

Weed Science ◽  
2018 ◽  
Vol 66 (4) ◽  
pp. 446-456 ◽  
Author(s):  
Nicholas E. Korres ◽  
Jason K. Norsworthy ◽  
Bryan G. Young ◽  
Daniel B. Reynolds ◽  
William G. Johnson ◽  
...  
Keyword(s):  
United States ◽  
Seed Viability ◽  
Soil Surface ◽  
The United States ◽  
Palmer Amaranth ◽  
Soil Conditions ◽  
Burial Depth ◽  
Amaranthus Palmeri ◽  
Seed Damage ◽  
Amaranthus Tuberculatus

AbstractKnowledge of the effects of burial depth and burial duration on seed viability and, consequently, seedbank persistence of Palmer amaranth (Amaranthus palmeriS. Watson) and waterhemp [Amaranthus tuberculatus(Moq.) J. D. Sauer] ecotypes can be used for the development of efficient weed management programs. This is of particular interest, given the great fecundity of both species and, consequently, their high seedbank replenishment potential. Seeds of both species collected from five different locations across the United States were investigated in seven states (sites) with different soil and climatic conditions. Seeds were placed at two depths (0 and 15 cm) for 3 yr. Each year, seeds were retrieved, and seed damage (shrunken, malformed, or broken) plus losses (deteriorated and futile germination) and viability were evaluated. Greater seed damage plus loss averaged across seed origin, burial depth, and year was recorded for lots tested at Illinois (51.3% and 51.8%) followed by Tennessee (40.5% and 45.1%) and Missouri (39.2% and 42%) forA. palmeriandA. tuberculatus, respectively. The site differences for seed persistence were probably due to higher volumetric water content at these sites. Rates of seed demise were directly proportional to burial depth (α=0.001), whereas the percentage of viable seeds recovered after 36 mo on the soil surface ranged from 4.1% to 4.3% compared with 5% to 5.3% at the 15-cm depth forA. palmeriandA. tuberculatus, respectively. Seed viability loss was greater in the seeds placed on the soil surface compared with the buried seeds. The greatest influences on seed viability were burial conditions and time and site-specific soil conditions, more so than geographical location. Thus, management of these weed species should focus on reducing seed shattering, enhancing seed removal from the soil surface, or adjusting tillage systems.

scholarly journals Coevolution of resistance to PPO inhibitors in waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Weed Science ◽  
2019 ◽  
Vol 67 (05) ◽  
pp. 521-526 ◽  
Author(s):  
Kathryn J. Lillie ◽  
Darci A. Giacomini ◽  
Jonathan D. Green ◽  
Patrick J. Tranel
Keyword(s):  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Pcr Assay ◽  
Common Waterhemp ◽  
First Case ◽  
Amaranthus Tuberculatus ◽  
Single Field ◽  
Inhibitor Resistance ◽  
Amino Acid Glycine ◽  
Quantitative Pcr Assay

AbstractThe first case of evolved protoporphyrinogen oxidase (PPO)-inhibitor resistance was observed in 2001 in common waterhemp [Amaranthus tuberculatus (Moq.) Sauer var. rudis (Sauer) Costea and Tardif]. This resistance in A. tuberculatus is most commonly conferred by deletion of the amino acid glycine at the 210th position (ΔGly-210) of the PPO enzyme (PPO2) encoded by PPX2. In a field in Kentucky in 2015, inadequate control of Amaranthus plants was observed following application of a PPO inhibitor. Morphological observations indicated that survivors included both A. tuberculatus and Palmer amaranth (Amaranthus palmeri S. Watson). Research was conducted to confirm species identities and resistance and then to determine whether resistance evolved independently in the two species or via hybridization. Results from a quantitative PCR assay based on the ribosomal internal transcribed spacer confirmed that both A. tuberculatus and A. palmeri coexisted in the field. The mutation conferring ΔGly-210 in PPO2 was identified in both species; phylogenetic analysis of a region of PPX2, however, indicated that the mutation evolved independently in the two species. Genotyping of greenhouse-grown plants that survived lactofen indicated that all A. tuberculatus survivors, but only a third of A. palmeri survivors, contained the ΔGly-210 mutation. Consequently, A. palmeri plants were evaluated for the presence of an arginine to glycine or methionine substitution at position 128 of PPO2 (Arg-128-Gly and Arg-128-Met). The Arg-128-Gly substitution was found to account for resistance that was not accounted for by the ΔGly-210 mutation in plants from the A. palmeri population. Results from this study provide a modern-day example of both parallel and convergent evolution occurring within a single field.

Safety and efficacy of linuron with or without an adjuvant or S-metolachlor for POST control of Palmer amaranth (Amaranthus palmeri) in sweetpotato

2021 ◽  
pp. 1-18
Author(s):  
Levi D. Moore ◽  
Katherine M. Jennings ◽  
David W. Monks ◽  
Ramon G. Leon ◽  
David L. Jordan ◽  
...  
Keyword(s):  
Nonionic Surfactant ◽  
Weed Control ◽  
Critical Period ◽  
Total Yield ◽  
Field Studies ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Foliar Injury ◽  
Protoporphyrinogen Oxidase ◽  
Safety And Efficacy

Abstract Field studies were conducted to evaluate linuron for POST control of Palmer amaranth in sweetpotato to minimize reliance on protoporphyrinogen oxidase (PPO)-inhibiting herbicides. Treatments were arranged in a two by four factorial where the first factor consisted of two rates of linuron (420 and 700 g ai ha−1), and the second factor consisted of linuron applied alone or in combinations of linuron plus a nonionic surfactant (NIS) (0.5% v/v), linuron plus S-metolachlor (800 g ai ha−1), or linuron plus NIS plus S-metolachlor. In addition, S-metolachlor alone and nontreated weedy and weed-free checks were included for comparison. Treatments were applied to ‘Covington’ sweetpotato 8 d after transplanting (DAP). S-metolachlor alone provided poor Palmer amaranth control because emergence had occurred at applications. All treatments that included linuron resulted in at least 98 and 91% Palmer amaranth control 1 and 2 wk after treatment (WAT), respectively. Including NIS with linuron did not increase Palmer amaranth control compared to linuron alone, but increased sweetpotato injury and subsequently decreased total sweetpotato yield by 25%. Including S-metolachlor with linuron resulted in the greatest Palmer amaranth control 4 WAT, but increased crop foliar injury to 36% 1 WAT compared to 17% foliar injury from linuron alone. Marketable and total sweetpotato yield was similar between linuron alone and linuron plus S-metolachlor or S-metolachlor plus NIS treatments, though all treatments resulted in at least 39% less total yield than the weed-free check resulting from herbicide injury and/or Palmer amaranth competition. Because of the excellent POST Palmer amaranth control from linuron 1 WAT, a system including linuron applied 7 DAP followed by S-metolachlor applied 14 DAP could help to extend residual Palmer amaranth control further into the critical period of weed control while minimizing sweetpotato injury.

scholarly journals Response of Palmer amaranth (Amaranthus palmeri S. Watson) and sugarbeet to desmedipham and phenmedipham

2021 ◽  
pp. 1-9
Author(s):  
Clint W. Beiermann ◽  
Cody F. Creech ◽  
Stevan Z. Knezevic ◽  
Amit J. Jhala ◽  
Robert Harveson ◽  
...  
Keyword(s):  
Mortality Rates ◽  
Selectivity Index ◽  
Palmer Amaranth ◽  
Greenhouse Experiment ◽  
Amaranthus Palmeri ◽  
True Leaf ◽  
Cotyledon Stage ◽  
Equivalent Rate ◽  
Herbicide Treatments ◽  
High Level

Abstract A prepackaged mixture of desmedipham + phenmedipham was previously labeled for control of Amaranthus spp. in sugarbeet. Currently, there are no effective POST herbicide options to control glyphosate-resistant Palmer amaranth in sugarbeet. Sugarbeet growers are interested in using desmedipham + phenmedipham to control escaped Palmer amaranth. In 2019, a greenhouse experiment was initiated near Scottsbluff, NE, to determine the selectivity of desmedipham and phenmedipham between Palmer amaranth and sugarbeet. Three populations of Palmer amaranth and four sugarbeet hybrids were evaluated. Herbicide treatments consisted of desmedipham and phenmedipham applied singly or as mixtures at an equivalent rate. Herbicides were applied when Palmer amaranth and sugarbeet were at the cotyledon stage, or two true-leaf sugarbeet stage and when Palmer amaranth was 7 cm tall. The selectivity indices for desmedipham, phenmedipham, and desmedipham + phenmedipham were 1.61, 2.47, and 3.05, respectively, at the cotyledon stage. At the two true-leaf application stage, the highest rates of desmedipham and phenmedipham were associated with low mortality rates in sugarbeet, resulting in a failed response of death. The highest rates of desmedipham + phenmedipham caused a death response of sugarbeet; the selectivity index was 2.15. Desmedipham treatments resulted in lower LD50 estimates for Palmer amaranth compared to phenmedipham, indicating that desmedipham can provide greater levels of control for Palmer amaranth. However, desmedipham also caused greater injury in sugarbeet, producing lower LD50 estimates compared to phenmedipham. Desmedipham + phenmedipham provided 90% or greater control of cotyledon-size Palmer amaranth at a labeled rate but also caused high levels of sugarbeet injury. Neither desmedipham, phenmedipham, nor desmedipham + phenmedipham was able to control 7-cm tall Palmer amaranth at previously labeled rates. Results indicate that desmedipham + phenmedipham can only control Palmer amaranth if applied at the cotyledon stage and a high level of sugarbeet injury is acceptable.

scholarly journals Influence of Selected Fungicides on Efficacy of Clethodim and 2,4-DB

2012 ◽  
Vol 39 (2) ◽  
pp. 121-126 ◽  
Author(s):  
Gurinderbir S. Chahal ◽  
David L. Jordan ◽  
Barbara B. Shew ◽  
Rick L. Brandenburg ◽  
James D. Burton ◽  
...  
Keyword(s):  
North Carolina ◽  
Sampling Interval ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Solution Ph ◽  
Affect Control ◽  
Solution Preparation ◽  
Positive Correlations ◽  
Sampling Times ◽  
Large Crabgrass

Abstract A range of fungicides and herbicides can be applied to control pests and optimize peanut yield. Experiments were conducted in North Carolina to define biological and physicochemical interactions when clethodim and 2,4-DB were applied alone or with selected fungicides. Pyraclostrobin consistently reduced large crabgrass [Digitaria sanguinalis (L.) Scop.] control by clethodim. Chlorothalonil and tebuconazole plus trifloxystrobin reduced large crabgrass control by clethodim in two of four experiments while prothioconazole plus tebuconazole and flutriafol did not affect control. Palmer amaranth [Amaranthus palmeri S. Wats] control by 2,4-DB was not affected by these fungicides. Although differences in spray solution pH were noted among mixtures of clethodim plus crop oil concentrate or 2,4-DB and fungicides, the range of pH was 4.40 to 4.92 and 6.72 to 7.20, respectively, across sampling times of 0, 6, 24, and 72 h after solution preparation. Permanent precipitates were formed when clethodim, crop oil concentrate, and chlorothalonil were co-applied at each sampling interval. Permanent precipitates were not observed when clethodim and crop oil concentrate were included with other fungicides or when 2,4-DB was mixed with fungicides. Significant positive correlations were noted for Palmer amaranth control by 2,4-DB and solution pH but not for clethodim and solution pH.

Sign in / Sign up

Export Citation Format

Share Document