scholarly journals Sex-specific markers for waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Weed Science ◽  
2019 ◽  
Vol 67 (4) ◽  
pp. 412-418 ◽  
Author(s):  
Jacob S. Montgomery ◽  
Ahmed Sadeque ◽  
Darci A. Giacomini ◽  
Patrick J. Brown ◽  
Patrick J. Tranel
Keyword(s):  
Crop Production ◽  
Genetic Basis ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Data Set ◽  
Amaranthus Tuberculatus ◽  
Primer Sets ◽  
Male Specific ◽  
Specific Sequences

AbstractWaterhemp [Amaranthus tuberculatus (Moq.) J. D. Sauer] and Palmer amaranth (Amaranthus palmeri S. Watson) are troublesome weeds of row-crop production in the United States. Their dioecious reproductive systems ensure outcrossing, facilitating rapid evolution and distribution of resistances to multiple herbicides. Little is known, however, about the genetic basis of dioecy in Amaranthus species. In this work, we use restriction site–associated DNA sequencing (RAD-Seq) to investigate the genetic basis of sex determination in A. tuberculatus and A. palmeri. For each species, approximately 200 plants of each sex were sampled and used to create RAD-Seq libraries. The resulting libraries were separately bar-coded and then pooled for sequencing with the Illumina platform, yielding millions of 64-bp reads. These reads were analyzed to identify sex-specific and sex-biased sequences. We identified 345 male-specific sequences from the A. palmeri data set and 2,754 male-specific sequences in A. tuberculatus. An unexpected 723 female-specific sequences were identified in a subset of the A. tuberculatus females; subsequent research, however, indicated female specificity of these markers was limited to the population from which they were identified. Primer sets designed to specifically amplify male-specific sequences were tested for accuracy on multiple, geographically distinct populations of A. tuberculatus and A. palmeri, as well as other Amaranthus species. Two primer sets for A. palmeri and four primer sets for A. tuberculatus were each able to distinguish between male and female plants with at least 95% accuracy. In the near term, sex-specific markers will be useful to the A. tuberculatus and A. palmeri research communities (e.g., to predict sex for crossing experiments). In the long-term, this research will provide the foundational tools for detailed investigations into the molecular biology and evolution of dioecy in weedy Amaranthus species.

Evaluating Effect of Degree of Water Stress on Growth and Fecundity of Palmer amaranth (Amaranthus palmeri) Using Soil Moisture Sensors

Weed Science ◽  
2018 ◽  
Vol 66 (6) ◽  
pp. 738-745 ◽  
Author(s):  
Parminder S. Chahal ◽  
Suat Irmak ◽  
Mithila Jugulam ◽  
Amit J. Jhala
Keyword(s):  
Soil Moisture ◽  
Water Stress ◽  
Seed Germination ◽  
Crop Production ◽  
Growth Index ◽  
The United States ◽  
Palmer Amaranth ◽  
Maximum Height ◽  
Amaranthus Palmeri ◽  
Soil Moisture Sensors

AbstractPalmer amaranth (Amaranthus palmeriS. Watson) is the most problematic weed in agronomic crop production fields in the United States. The objective of this study was to determine the effect of degree of water stress on the growth and fecundity ofA. palmeriusing soil moisture sensors under greenhouse conditions. TwoA. palmeribiotypes collected from Nebraska were grown in loam soil maintained at 100%, 75%, 50%, 25%, and 12.5% soil field capacity (FC) corresponding to no, light, moderate, high, and severe water stress levels, respectively. Water was regularly added to pots based on soil moisture levels detected by Watermark or Decagon 5TM sensors to maintain the desired water stress level.Amaranthus palmeriplants maintained at ≤25% FC did not survive more than 35 d after transplanting.Amaranthus palmeriat 100%, 75%, and 50% FC produced similar numbers of leaves (588 to 670 plant−1) based on model estimates; however, plants at 100% FC achieved a maximum height of 178 cm compared with 124 and 88 cm at 75% and 50% FC, respectively. The growth index (1.1×105to 1.4×105cm3plant−1) and total leaf area (571 to 693 cm2plant−1) were also similar at 100%, 75%, and 50% FC.Amaranthus palmeriproduced similar root biomass (2.3 to 3 g plant−1) at 100%, 75%, and 50% FC compared with 0.6 to 0.7 g plant−1at 25% and 12.5% FC, respectively. Seed production was greatest (42,000 seeds plant−1) at 100% FC compared with 75% and 50% FC (14,000 to 19,000 seeds plant−1); however, the cumulative seed germination was similar (38% to 46%) when mother plants were exposed to ≥50% FC. The results of this study show thatA. palmerican survive ≥50% FC continuous water stress conditions and can produce a significant number of seeds with no effect of on seed germination.

scholarly journals Seedbank Persistence of Palmer Amaranth (Amaranthus palmeri) and Waterhemp (Amaranthus tuberculatus) across Diverse Geographical Regions in the United States

Weed Science ◽  
2018 ◽  
Vol 66 (4) ◽  
pp. 446-456 ◽  
Author(s):  
Nicholas E. Korres ◽  
Jason K. Norsworthy ◽  
Bryan G. Young ◽  
Daniel B. Reynolds ◽  
William G. Johnson ◽  
...  
Keyword(s):  
United States ◽  
Seed Viability ◽  
Soil Surface ◽  
The United States ◽  
Palmer Amaranth ◽  
Soil Conditions ◽  
Burial Depth ◽  
Amaranthus Palmeri ◽  
Seed Damage ◽  
Amaranthus Tuberculatus

AbstractKnowledge of the effects of burial depth and burial duration on seed viability and, consequently, seedbank persistence of Palmer amaranth (Amaranthus palmeriS. Watson) and waterhemp [Amaranthus tuberculatus(Moq.) J. D. Sauer] ecotypes can be used for the development of efficient weed management programs. This is of particular interest, given the great fecundity of both species and, consequently, their high seedbank replenishment potential. Seeds of both species collected from five different locations across the United States were investigated in seven states (sites) with different soil and climatic conditions. Seeds were placed at two depths (0 and 15 cm) for 3 yr. Each year, seeds were retrieved, and seed damage (shrunken, malformed, or broken) plus losses (deteriorated and futile germination) and viability were evaluated. Greater seed damage plus loss averaged across seed origin, burial depth, and year was recorded for lots tested at Illinois (51.3% and 51.8%) followed by Tennessee (40.5% and 45.1%) and Missouri (39.2% and 42%) forA. palmeriandA. tuberculatus, respectively. The site differences for seed persistence were probably due to higher volumetric water content at these sites. Rates of seed demise were directly proportional to burial depth (α=0.001), whereas the percentage of viable seeds recovered after 36 mo on the soil surface ranged from 4.1% to 4.3% compared with 5% to 5.3% at the 15-cm depth forA. palmeriandA. tuberculatus, respectively. Seed viability loss was greater in the seeds placed on the soil surface compared with the buried seeds. The greatest influences on seed viability were burial conditions and time and site-specific soil conditions, more so than geographical location. Thus, management of these weed species should focus on reducing seed shattering, enhancing seed removal from the soil surface, or adjusting tillage systems.

scholarly journals Glyphosate-Resistant Palmer Amaranth (Amaranthus palmeri) in Nebraska: Confirmation, EPSPS Gene Amplification, and Response to POST Corn and Soybean Herbicides

2017 ◽  
Vol 31 (1) ◽  
pp. 80-93 ◽  
Author(s):  
Parminder S. Chahal ◽  
Vijay K. Varanasi ◽  
Mithila Jugulam ◽  
Amit J. Jhala
Keyword(s):  
Gene Amplification ◽  
Crop Production ◽  
Acetolactate Synthase ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Epsps Gene ◽  
South Central ◽  
Whole Plant ◽  
Herbicide Programs

Palmer amaranth is the most problematic weed in agronomic crop production fields in the United States. A Palmer amaranth biotype was not controlled with sequential applications of glyphosate in glyphosate-resistant (GR) soybean production field in south-central Nebraska. The seeds of the putative GR Palmer amaranth biotype were collected in the fall of 2015. The objectives of this study were to (1) confirm GR Palmer amaranth and determine the level of resistance in a whole-plant dose-response bioassay, (2) determine the copy number of 5-enolpyruvylshikimate-3-phosphate (EPSPS) gene, the molecular target of glyphosate, and (3) evaluate the response of GR Palmer amaranth biotype to POST corn and soybean herbicides with different modes-of-action. Based on the effective dose required to control 90% of plants (ED90), the putative GR Palmer amaranth biotype was 37- to 40-fold resistant to glyphosate depending on the glyphosate-susceptible (GS) used as a baseline population.EPSPSgene amplification was present in the GR Palmer amaranth biotype with up to 32 to 105 EPSPS copies compared to the known GS biotypes. Response of GR Palmer amaranth to POST corn and soybean herbicides suggest reduced sensitivity to atrazine, hydroxyphenylpyruvate dioxygenase (HPPD)- (mesotrione, tembotrione, and topramezone), acetolactate synthase (ALS)- (halosulfuron-methyl), and protoporphyrinogen oxidase (PPO)- (carfentrazone and lactofen) inhibitors. GR Palmer amaranth was effectively controlled (>90%) with glufosinate applied at 593 g ai ha−1with ≥95% reduction in biomass. More research is needed to determine whether this biotype exhibits multiple resistant to other group of herbicides and evaluate herbicide programs for effective management in corn and soybean.

Palmer Amaranth (Amaranthus palmeri) Control by Glufosinate plus Fluometuron Applied Postemergence to WideStrike®Cotton

2013 ◽  
Vol 27 (2) ◽  
pp. 291-297 ◽  
Author(s):  
Kelly A. Barnett ◽  
A. Stanley Culpepper ◽  
Alan C. York ◽  
Lawrence E. Steckel
Keyword(s):  
United States ◽  
Weed Control ◽  
Acetolactate Synthase ◽  
The United States ◽  
Palmer Amaranth ◽  
Effective Control ◽  
Yield Response ◽  
Amaranthus Palmeri ◽  
Cotton Yield ◽  
Cotton Cultivar

Glyphosate-resistant (GR) weeds, especially GR Palmer amaranth, are very problematic for cotton growers in the Southeast and Midsouth regions of the United States. Glufosinate can control GR Palmer amaranth, and growers are transitioning to glufosinate-based systems. Palmer amaranth must be small for consistently effective control by glufosinate. Because this weed grows rapidly, growers are not always timely with applications. With widespread resistance to acetolactate synthase-inhibiting herbicides, growers have few herbicide options to mix with glufosinate to improve control of larger weeds. In a field study using a WideStrike®cotton cultivar, we evaluated fluometuron at 140 to 1,120 g ai ha−1mixed with the ammonium salt of glufosinate at 485 g ae ha−1for control of GR Palmer amaranth 13 and 26 cm tall. Standard PRE- and POST-directed herbicides were included in the systems. Glufosinate alone injured the WideStrike® cotton less than 10%. Fluometuron increased injury up to 25% but did not adversely affect yield. Glufosinate controlled 13-cm Palmer amaranth at least 90%, and there was no improvement in weed control nor a cotton yield response to fluometuron mixed with glufosinate. Palmer amaranth 26 cm tall was controlled only 59% by glufosinate. Fluometuron mixed with glufosinate increased control of the larger weeds up to 28% and there was a trend for greater yields. However, delaying applications until weeds were 26 cm reduced yield 22% relative to timely application. Our results suggest fluometuron mixed with glufosinate may be of some benefit when attempting to control large Palmer amaranth. However, mixing fluometuron with glufosinate is not a substitute for a timely glufosinate application.

Management of glyphosate-resistant Palmer amaranth (Amaranthus palmeri) in 2,4-D–, glufosinate-, and glyphosate-resistant soybean

2020 ◽  
pp. 1-8
Author(s):  
Chandrima Shyam ◽  
Parminder S. Chahal ◽  
Amit J. Jhala ◽  
Mithila Jugulam
Keyword(s):  
United States ◽  
Field Experiments ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Soybean Yield ◽  
Chlorimuron Ethyl ◽  
Density And Biomass ◽  
Herbicide Programs ◽  
Biomass Reduction

Abstract Glyphosate-resistant (GR) Palmer amaranth is a problematic, annual broadleaf weed in soybean production fields in Nebraska and many other states in the United States. Soybean resistant to 2,4-D, glyphosate, and glufosinate (Enlist E3TM) has been developed and was first grown commercially in 2019. The objectives of this research were to evaluate the effect of herbicide programs applied PRE, PRE followed by (fb) late-POST (LPOST), and early-POST (EPOST) fb LPOST on GR Palmer amaranth control, density, and biomass reduction, soybean injury, and yield. Field experiments were conducted near Carleton, NE, in 2018, and 2019 in a grower’s field infested with GR Palmer amaranth in 2,4-D–, glyphosate-, and glufosinate-resistant soybean. Sulfentrazone + cloransulam-methyl, imazethapyr + saflufenacil + pyroxasulfone, and chlorimuron ethyl + flumioxazin + metribuzin applied PRE provided 84% to 97% control of GR Palmer amaranth compared with the nontreated control 14 d after PRE. Averaged across herbicide programs, PRE fb 2,4-D and/or glufosinate, and sequential application of 2,4-D or glufosinate applied EPOST fb LPOST resulted in 92% and 88% control of GR Palmer amaranth, respectively, compared with 62% control with PRE-only programs 14 d after LPOST. Reductions in Palmer amaranth biomass followed the same trend; however, Palmer amaranth density was reduced 98% in EPOST fb LPOST programs compared with 91% reduction in PRE fb LPOST and 76% reduction in PRE-only programs. PRE fb LPOST and EPOST fb LPOST programs resulted in an average soybean yield of 4,478 and 4,706 kg ha−1, respectively, compared with 3,043 kg ha−1 in PRE-only programs. Herbicide programs evaluated in this study resulted in no soybean injury. The results of this research illustrate that herbicide programs are available for the management of GR Palmer amaranth in 2,4-D–, glyphosate-, and glufosinate-resistant soybean.

Palmer Amaranth (Amaranthus palmeri) Management in Dicamba-Resistant Cotton

2015 ◽  
Vol 29 (4) ◽  
pp. 758-770 ◽  
Author(s):  
Charles W. Cahoon ◽  
Alan C. York ◽  
David L. Jordan ◽  
Wesley J. Everman ◽  
Richard W. Seagroves ◽  
...  
Keyword(s):  
United States ◽  
North Carolina ◽  
Field Experiment ◽  
Acetolactate Synthase ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Cotton Yield ◽  
Herbicide Resistant

Cotton growers rely heavily upon glufosinate and various residual herbicides applied preplant, PRE, and POST to control Palmer amaranth resistant to glyphosate and acetolactate synthase-inhibiting herbicides. Recently deregulated in the United States, cotton resistant to dicamba, glufosinate, and glyphosate (B2XF cotton) offers a new platform for controlling herbicide-resistant Palmer amaranth. A field experiment was conducted in North Carolina and Georgia to determine B2XF cotton tolerance to dicamba, glufosinate, and glyphosate and to compare Palmer amaranth control by dicamba to a currently used, nondicamba program in both glufosinate- and glyphosate-based systems. Treatments consisted of glyphosate or glufosinate applied early POST (EPOST) and mid-POST (MPOST) in a factorial arrangement of treatments with seven dicamba options (no dicamba, PRE, EPOST, MPOST, PRE followed by [fb] EPOST, PRE fb MPOST, and EPOST fb MPOST) and a nondicamba standard. The nondicamba standard consisted of fomesafen PRE, pyrithiobac EPOST, and acetochlor MPOST. Dicamba caused no injury when applied PRE and only minor, transient injury when applied POST. At time of EPOST application, Palmer amaranth control by dicamba or fomesafen applied PRE, in combination with acetochlor, was similar and 13 to 17% greater than acetochlor alone. Dicamba was generally more effective on Palmer amaranth applied POST rather than PRE, and two applications were usually more effective than one. In glyphosate-based systems, greater Palmer amaranth control and cotton yield were obtained with dicamba applied EPOST, MPOST, or EPOST fb MPOST compared with the standard herbicides in North Carolina. In contrast, dicamba was no more effective than the standard herbicides in the glufosinate-based systems. In Georgia, dicamba was as effective as the standard herbicides in a glyphosate-based system only when dicamba was applied EPOST fb MPOST. In glufosinate-based systems in Georgia, dicamba was as effective as standard herbicides only when dicamba was applied twice.

Evaluating Cover Crops and Herbicides for Glyphosate-Resistant Palmer Amaranth (Amaranthus palmeri) Control in Cotton

2016 ◽  
Vol 30 (2) ◽  
pp. 415-422 ◽  
Author(s):  
Matthew S. Wiggins ◽  
Robert M. Hayes ◽  
Lawrence E. Steckel
Keyword(s):  
Cover Crops ◽  
Cover Crop ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Hairy Vetch ◽  
Cereal Rye ◽  
Crimson Clover ◽  
Legume Cover Crops ◽  
Herbicide Programs

Glyphosate-resistant (GR) weeds, especially GR Palmer amaranth, are very problematic in cotton-producing areas of the midsouthern region of the United States. Growers rely heavily on PRE residual herbicides to control Palmer amaranth since few effective POST options exist. Interest in integrating high-residue cover crops with existing herbicide programs to combat GR weeds has increased. Research was conducted in 2013 and 2014 in Tennessee to evaluate GR Palmer amaranth control when integrating cover crops and PRE residual herbicides. Cereal rye, crimson clover, hairy vetch, winter wheat, and combinations of one grass plus one legume were compared with winter weeds without a cover crop followed by fluometuron or acetochlor applied PRE. Biomass of cover crops was determined prior to termination 3 wk before planting. Combinations of grass and legume cover crops accumulated the most biomass (> 3,500 kg ha−1) but by 28 d after application (DAA) the cereal rye and wheat provided the best Palmer amaranth control. Crimson clover and hairy vetch treatments had the greatest number of Palmer amaranth. These cereal and legume blends reduced Palmer amaranth emergence by half compared to non–cover-treated areas. Fluometuron and acetochlor controlled Palmer amaranth 95 and 89%, respectively, at 14 DAA and 54 and 62%, respectively, at 28 DAA. Cover crops in combination with a PRE herbicide did not adequately control Palmer amaranth.

scholarly journals Import of Palmer amaranth (Amaranthus palmeri S. Wats.) seed with sweet potato (Ipomea batatas (L.) Lam) slips

2021 ◽  
Author(s):  
Eric Robert Page ◽  
Robert E. Nurse ◽  
Sydney Meloche ◽  
Kerry Bosveld ◽  
Christopher Grainger ◽  
...  
Keyword(s):  
Sweet Potato ◽  
Arable Land ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Ipomea Batatas ◽  
Amaranth Seed ◽  
Species Specific

Palmer amaranth is one of the most economically important and widespread weeds of arable land in the United States. Although no populations are currently known to exist in Canada, its distribution has expanded northward such that it is present in many of the States bordering Canada and multiple pathways exist for its introduction. In this short communication we report on the transport of viable Palmer amaranth seed on imported sweet potato slips. A reproductive pair of Palmer amaranth seedlings were identified from soil accompanying imported sweet potato slips in 2018. Identification was confirmed using species specific single nucleotide polymorphisms.

scholarly journals Late-season surveys to document seed rain potential of Palmer amaranth (Amaranthus palmeri) and waterhemp (Amaranthus tuberculatus) in Texas cotton

PLoS ONE ◽  
2020 ◽  
Vol 15 (6) ◽  
pp. e0226054
Author(s):  
Kaisa Werner ◽  
Debalin Sarangi ◽  
Scott Nolte ◽  
Peter Dotray ◽  
Muthukumar Bagavathiannan
Keyword(s):  
Seed Rain ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Late Season ◽  
Amaranthus Tuberculatus
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