Using pre‐ and postexploitation samples to assess the impact of commercial whaling on the genetic characteristics of eastern North Pacific gray and humpback whales and to compare methods used to infer historic demography

2020 ◽  
Vol 36 (2) ◽  
pp. 398-420 ◽  
Author(s):  
Stephanie L. Béland ◽  
Brenna A. Frasier ◽  
James D. Darling ◽  
Timothy R. Frasier
Keyword(s):  
North Pacific ◽  
Humpback Whales ◽  
Genetic Characteristics ◽  
Commercial Whaling ◽  
The Impact

scholarly journals High pregnancy rates in humpback whales ( Megaptera novaeangliae ) around the Western Antarctic Peninsula, evidence of a rapidly growing population

2018 ◽  
Vol 5 (5) ◽  
pp. 180017 ◽  
Author(s):  
Logan J. Pallin ◽  
C. Scott Baker ◽  
Debbie Steel ◽  
Nicholas M. Kellar ◽  
Jooke Robbins ◽  
...  
Keyword(s):  
Population Growth ◽  
Antarctic Peninsula ◽  
Pregnancy Rates ◽  
Growth Potential ◽  
Humpback Whales ◽  
Western Antarctic Peninsula ◽  
Tissue Samples ◽  
Commercial Whaling ◽  
Reproductive Rates ◽  
The Impact

Antarctic humpback whales are recovering from near extirpation from commercial whaling. To understand the dynamics of this recovery and establish a baseline to monitor impacts of a rapidly changing environment, we investigated sex ratios and pregnancy rates of females within the Western Antarctic Peninsula (WAP) feeding population. DNA profiling of 577 tissue samples (2010–2016) identified 239 males and 268 females. Blubber progesterone levels indicated 63.5% of the females biopsied were pregnant. This proportion varied significantly across years, from 36% in 2010 to 86% in 2014. A comparison of samples collected in summer versus fall showed significant increases in the proportion of females present (50% to 59%) and pregnant (59% to 72%), consistent with demographic variation in migratory timing. We also found evidence of annual reproduction among females; 54.5% of females accompanied by a calf were pregnant. These high pregnancy rates are consistent with a population recovering from past exploitation, but appear inconsistent with recent estimates of WAP humpback population growth. Thus, our results will help to better understand population growth potential and set a current baseline from which to determine the impact of climate change and variability on fecundity and reproductive rates.

scholarly journals Fluctuating reproductive rates in Hawaii's humpback whales, Megaptera novaeangliae , reflect recent climate anomalies in the North Pacific

2019 ◽  
Vol 6 (3) ◽  
pp. 181463 ◽  
Author(s):  
R. Cartwright ◽  
A. Venema ◽  
V. Hernandez ◽  
C. Wyels ◽  
J. Cesere ◽  
...  
Keyword(s):  
Climate Change ◽  
North Pacific ◽  
Megaptera Novaeangliae ◽  
Anthropogenic Climate Change ◽  
Humpback Whales ◽  
Encounter Rates ◽  
The North ◽  
The Impact ◽  
The North Pacific ◽  
Population Segment

Alongside changing ocean temperatures and ocean chemistry, anthropogenic climate change is now impacting the fundamental processes that support marine systems. However, where natural climate aberrations mask or amplify the impacts of anthropogenic climate change, identifying key detrimental changes is challenging. In these situations, long-term, systematic field studies allow the consequences of anthropogenically driven climate change to be distinguished from the expected fluctuations in natural resources. In this study, we describe fluctuations in encounter rates for humpback whales, Megaptera novaeangliae , between 2008 and 2018. Encounter rates were assessed during transect surveys of the Au'Au Channel, Maui, Hawaii. Initially, rates increased, tracking projected growth rates for this population segment. Rates reached a peak in 2013, then declined through 2018. Specifically, between 2013 and 2018, mother–calf encounter rates dropped by 76.5%, suggesting a rapid reduction in the reproductive rate of the newly designated Hawaii Distinct Population Segment of humpback whales during this time. As this decline coincided with changes in the Pacific decadal oscillation, the development of the NE Pacific marine heat wave and the evolution of the 2016 El Niño, this may be another example of the impact of this potent trifecta of climatic events within the North Pacific.

Clinical application of polymorphic variants of the genes ESR1 and CYP2D6*4 in patients with breast and endometrial cancer

2017 ◽  
pp. 132-138
Author(s):  
O.V. Paliychuk ◽  
◽  
L.Z. Polishchuk ◽  
Z.I. Rossokha ◽  
◽  
...  
Keyword(s):  
Breast Cancer ◽  
Endometrial Cancer ◽  
Hormone Therapy ◽  
Molecular Genetic ◽  
Cancer Syndrome ◽  
Genetic Characteristics ◽  
Multiple Tumors ◽  
Receptor Status ◽  
Genetic Examination ◽  
The Impact

The objective: determining gene polymorphism features ERS1, CYP2D6 in patients with breast cancer (RHZ) and endometrial cancer (EC) and the impact assessment studied genetic characteristics compared to receptor status (immunohistochemical determination of expression levels of ER, PR) tumors and the results of the treatment. Patients and methods. article presents the results of complex clinical, morphological, clinical-genealogical, and molecular-genetic examination of 28 females: 19 patients with breast cancer (BC), 9 patients with endometrial cancer (EC), including 5 patients with primary-multiple tumors (PMT) with and without tumor pathology aggregation in families. Results. The It was determined that in patients’ families malignant tumors of breast, uterine body and/or ovaries prevail that corresponds to Lynch type II syndrome (family cancer syndrome). Molecular-genetic examination of genomic DNA of peripheral blood and histological sections for the presence of SNPs of ESR and CYP2D6*4 genes comparing with the results of immunohistochemical study of tumors for receptors ER and PR status have not found associations between these characteristics; although among EC patients the occurrence of genotypes 397ТТ and 351АА was significantly higher comparing with BC patients (55.55% and 10.5% for genotype 397ТТ,and 15.8% for genotype 351АА, respectively). At the same time the patients with BC and primary-multiple tumors (PMT) of female reproductive system organs (FRSO) that carried mutations in BRCA1 in all the cases demonstrated positive ER and PR receptor status and adverse combinations of polymorphous variants of the genes ESR1 (397СС, 397ТС) and CYP2D6*4 (1846G, 1846GA), suggesting combined effect of these factors on the development of malignant neoplasias of FRSO in families with positive family cancer history. In BC patients, receiving standard hormone therapy with tamoxifen, those, who had genotype 1846GG of the gene CYP2D6*4, in 3 patients (15.8%) of 19 (100%) patients disease recurrence was diagnosed. Conclusion. The obtained results allow clinical use of the assessment of polymorphism frequency of the genes ESR1 and CYP2D6*4 for selection of individual hormone therapy regimens schemes for BC patients, to increase efficacy of dispensary observation after finishing of special therapy for such patients, and also personalization of complex and combined treatment regimens. Key words: breast cancer, endometrial cancer, family cancer syndrome, single nucleotide polymorphisms (SNPs) of the genes ESR1, CYP2D6*4.

scholarly journals Nonstationary Responses of Demersal Fishes to Environmental Variations in Temperate Waters of the Northwestern North Pacific under a Changing Climate

Fishes ◽  
2021 ◽  
Vol 6 (3) ◽  
pp. 22
Author(s):  
Qingsong He ◽  
Shuyang Ma ◽  
Qinwang Xing ◽  
Wenchao Zhang ◽  
Haiqing Yu ◽  
...  
Keyword(s):  
North Pacific ◽  
Negative Relationship ◽  
Demersal Fish ◽  
Fishing Effort ◽  
Asian Winter Monsoon ◽  
Changing Climate ◽  
Sst Variability ◽  
Environmental Variations ◽  
The Impact ◽  
Demersal Fishes

Although nonstationarity in marine ecosystems has attracted great attention, the nonstationary responses of demersal fishes to environmental variations induced by the changing climate are still not well understood. Here, we collected 21 time series of demersal fishes from 1956 to 2015 to investigate the climate-induced nonstationary responses in temperate waters of the northwestern North Pacific (NWP). We showed that these demersal fishes experienced state shifts in approximately 1986/87, accompanied by abrupt warming over this region. Moreover, the relationships between demersal fishes and sea surface temperature (SST) were found to change between the two identified eras (i.e., a weak relationship before 1986 and a strong negative relationship after 1986), which may be primarily caused by the alternating dominance of the East Asian winter monsoon and mega-ENSO on SST in temperate waters of the NWP. The identified climate-induced nonstationary responses of demersal fishes to SST variability in this study may provide implications for understanding climate-induced biological dynamics, predicting demersal fish fluctuations, coping with potential ecological risks, and the sustainable exploitation of fishery resources in the future climate. Note that the impact of fishing on the demersal fishes in temperate waters of the NWP was not assessed in this study due to the lack of fishing effort data and therefore the conclusions of our research should be approached with caution.

scholarly journals Plasmodium vivax from Duffy-Negative and Duffy-Positive Individuals Shares Similar Gene Pool in East Africa

2021 ◽  
Author(s):  
Daniel Kepple ◽  
Alfred Hubbard ◽  
Musab M Ali ◽  
Beka R Abargero ◽  
Karen Lopez ◽  
...  
Keyword(s):  
Plasmodium Vivax ◽  
East Africa ◽  
Sub Saharan Africa ◽  
Road Density ◽  
Genetic Characteristics ◽  
Plasmodium Vivax Malaria ◽  
Genetic Clusters ◽  
Sub Saharan ◽  
The Impact ◽  
Duffy Negative

Abstract Plasmodium vivax malaria was thought to be rare in Africa, but an increasing number of P. vivax cases reported across Africa and in Duffy-negative individuals challenges this conventional dogma. The genetic characteristics of P. vivax in Duffy-negative infections, the transmission of P. vivax in East Africa, and the impact of environments on transmission remain largely unknown. This study examined genetic and transmission features of P. vivax from 107 Duffy-negative and 305 Duffy-positive individuals in Ethiopia and Sudan. No clear genetic differentiation was found in P. vivax between the two Duffy groups, indicating between-host transmission. P. vivax from Ethiopia and Sudan showed similar genetic clusters, except samples from Khartoum, possibly due to distance and road density that inhibited parasite gene flow. This study is the first to show that P. vivax can transmit to and from Duffy-negative individuals and provides critical insights into the spread of P. vivax in sub-Saharan Africa.

scholarly journals Seasonal Evolution of Aleutian Low Pressure Systems: Implications for the North Pacific Subpolar Circulation*

2009 ◽  
Vol 39 (6) ◽  
pp. 1317-1339 ◽  
Author(s):  
Robert S. Pickart ◽  
Alison M. Macdonald ◽  
G. W. K. Moore ◽  
Ian A. Renfrew ◽  
John E. Walsh ◽  
...  
Keyword(s):  
North Pacific ◽  
Lower Troposphere ◽  
Gulf Of Alaska ◽  
Low Pressure ◽  
Aleutian Low ◽  
The North ◽  
Early Fall ◽  
The Impact ◽  
The North Pacific ◽  
Low Pressure Systems

Abstract The seasonal change in the development of Aleutian low pressure systems from early fall to early winter is analyzed using a combination of meteorological reanalysis fields, satellite sea surface temperature (SST) data, and satellite wind data. The time period of the study is September–December 2002, although results are shown to be representative of the long-term climatology. Characteristics of the storms were documented as they progressed across the North Pacific, including their path, central pressure, deepening rate, and speed of translation. Clear patterns emerged. Storms tended to deepen in two distinct geographical locations—the Gulf of Alaska in early fall and the western North Pacific in late fall. In the Gulf of Alaska, a quasi-permanent “notch” in the SST distribution is argued to be of significance. The signature of the notch is imprinted in the atmosphere, resulting in a region of enhanced cyclonic potential vorticity in the lower troposphere that is conducive for storm development. Later in the season, as winter approaches and the Sea of Okhotsk becomes partially ice covered and cold, the air emanating from the Asian continent leads to enhanced baroclinicity in the region south of Kamchatka. This corresponds to enhanced storm cyclogenesis in that region. Consequently, there is a seasonal westward migration of the dominant lobe of the Aleutian low. The impact of the wind stress curl pattern resulting from these two regions of storm development on the oceanic circulation is investigated using historical hydrography. It is argued that the seasonal bimodal input of cyclonic vorticity from the wind may be partly responsible for the two distinct North Pacific subarctic gyres.

scholarly journals Multimodel Future Projections of Wintertime North Atlantic and North Pacific Tropospheric Jets: A Bayesian Analysis

2018 ◽  
Vol 31 (6) ◽  
pp. 2533-2545 ◽  
Author(s):  
D. Whittleston ◽  
K. A. McColl ◽  
D. Entekhabi
Keyword(s):  
Greenhouse Gas ◽  
North Atlantic ◽  
North Pacific ◽  
Current Model ◽  
Systematic Bias ◽  
Weighting Method ◽  
The North ◽  
State Dependent ◽  
The North Atlantic ◽  
The Impact

The impact of future greenhouse gas forcing on the North Atlantic and North Pacific tropospheric jets remains uncertain. Opposing changes in the latitudinal temperature gradient—forced by amplified lower-atmospheric Arctic warming versus upper-atmospheric tropical warming—make robust predictions a challenge. Despite some models simulating more realistic jets than others, it remains the prevailing approach to treat each model as equally probable (i.e., democratic weighting). This study compares democratically weighted projections to an alternative Bayesian-weighting method based on the ability of models to simulate historical wintertime jet climatology. The novel Bayesian technique is developed to be broadly applicable to high-dimensional fields. Results show the Bayesian weighting can reduce systematic bias and suggest the wintertime jet response to greenhouse gas forcing is largely independent of this historical bias (i.e., not state dependent). A future strengthening and narrowing is seen in both winter jets, particularly at the upper levels. The widely reported poleward shift at the level of the eddy-driven jet does not appear statistically robust, particularly over the North Atlantic, indicating sensitivity to current model deficiencies.

REACTION OF SPRING WHEAT LINES WITH FOREIGN GENETIC MATERIAL TO THE IMPACT OF ARTIFICIALLY CREATED STRESSES

2021 ◽  
Author(s):  
O. V. Pavlova ◽  
◽  
L. A. Marchenkova ◽  
R. F. Chavdar ◽  
T. G. Orlova ◽  
...  
Keyword(s):  
Sodium Chloride ◽  
Environmental Factors ◽  
Spring Wheat ◽  
Genetic Material ◽  
Growth Processes ◽  
Genetic Characteristics ◽  
Early Stages ◽  
Inhibition Of Growth ◽  
Wheat Lines ◽  
The Impact

The adaptive properties of spring wheat lines with foreign genetic material at the early stages of ontogenesis on the backgrounds of salinization with sodium chloride and prolonged flooding of seeds in water were evaluated. In the course of the work, different degrees of inhibition of growth processes were revealed, depending on the factor used and the genetic characteristics of the studied forms, a comprehensive (summary) assessment of the index of stability characterizing adaptability to adverse environmental factors was shown.

scholarly journals Novel Polymorphisms and Genetic Characteristics of the Prion Protein Gene (PRNP) in Dogs—A Resistant Animal of Prion Disease

2020 ◽  
Vol 21 (11) ◽  
pp. 4160 ◽  
Author(s):  
Dong-Ju Kim ◽  
Yong-Chan Kim ◽  
An-Dang Kim ◽  
Byung-Hoon Jeong
Keyword(s):  
Hydrogen Bonds ◽  
Prion Protein ◽  
Protein Gene ◽  
Direct Sequencing ◽  
Transmissible Spongiform Encephalopathies ◽  
Prion Protein Gene ◽  
Genetic Characteristics ◽  
Aggregation Propensity ◽  
Wide Range ◽  
The Impact

Transmissible spongiform encephalopathies (TSEs) have been reported in a wide range of species. However, TSE infection in natural cases has never been reported in dogs. Previous studies have reported that polymorphisms of the prion protein gene (PRNP) have a direct impact on the susceptibility of TSE. However, studies on polymorphisms of the canine PRNP gene are very rare in dogs. We examined the genotype, allele, and haplotype frequencies of canine PRNP in 204 dogs using direct sequencing and analyzed linkage disequilibrium (LD) using Haploview version 4.2. In addition, to evaluate the impact of nonsynonymous polymorphisms on the function of prion protein (PrP), we carried out in silico analysis using PolyPhen-2, PROVEAN, and PANTHER. Furthermore, we analyzed the structure of PrP and hydrogen bonds according to alleles of nonsynonymous single nucleotide polymorphisms (SNPs) using the Swiss-Pdb Viewer program. Finally, we predicted the impact of the polymorphisms on the aggregation propensity of dog PrP using AMYCO. We identified a total of eight polymorphisms, including five novel SNPs and one insertion/deletion polymorphism, and found strong LDs and six major haplotypes among eight polymorphisms. In addition, we identified significantly different distribution of haplotypes among eight dog breeds, however, the kinds of identified polymorphisms were different among each dog breed. We predicted that p.64_71del HGGGWGQP, Asp182Gly, and Asp182Glu polymorphisms can impact the function and/or structure of dog PrP. Furthermore, the number of hydrogen bonds of dog PrP with the Glu182 and Gly182 alleles were predicted to be less than those with the Asp182 allele. Finally, Asp163Glu and Asp182Gly showed more aggregation propensity than wild-type dog PrP. These results suggest that nonsynonymous SNPs, Asp182Glu and Asp182Gly, can influence the stability of dog PrP and confer the possibility of TSE infection in dogs.

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