scholarly journals Genomic‐based epidemiology reveals independent origins and gene flow of glyphosate resistance in Bassia scoparia populations across North America

2021 ◽  
Author(s):  
Karl Ravet ◽  
Crystal D. Sparks ◽  
Andrea L. Dixon ◽  
Anita Küpper ◽  
Eric P. Westra ◽  
...  
Keyword(s):  
Gene Flow ◽  
North America ◽  
Glyphosate Resistance

scholarly journals Population structure and demographic history of the chukar partridge Alectoris chukar in China

2013 ◽  
Vol 59 (4) ◽  
pp. 458-474 ◽  
Author(s):  
Sen Song ◽  
Shijie Bao ◽  
Ying Wang ◽  
Xinkang Bao ◽  
Bei An ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
North America ◽  
Demographic History ◽  
Population Expansion ◽  
Northwest China ◽  
Population History ◽  
Extant Species ◽  
History Of ◽  
Chukar Partridge

Abstract Pleistocene climate fluctuations have shaped the patterns of genetic diversity observed in extant species. Although the effects of recent glacial cycles on genetic diversity have been well studied on species in Europe and North America, genetic legacy of species in the Pleistocene in north and northwest of China where glaciations was not synchronous with the ice sheet development in the Northern Hemisphere or or had little or no ice cover during the glaciations’ period, remains poorly understood. Here we used phylogeographic methods to investigate the genetic structure and population history of the chukar partridge Alec-toris chukar in north and northwest China. A 1,152 – 1,154 bp portion of the mtDNA CR were sequenced for all 279 specimens and a total number of 91 haplotypes were defined by 113 variable sites. High levels of gene flow were found and gene flow estimates were greater than 1 for most population pairs in our study. The AMOVA analysis showed that 81% and 16% of the total genetic variability was found within populations and among populations within groups, respectively. The demographic history of chukar was examined using neutrality tests and mismatch distribution analyses and results indicated Late Pleistocene population expansion. Results revealed that most populations of chukar experienced population expansion during 0.027 ? 0.06 Ma. These results are at odds with the results found in Europe and North America, where population expansions occurred after Last Glacial Maximum (LGM, 0.023 to 0.018 Ma). Our results are not consistent with the results from avian species of Tibetan Plateau, either, where species experienced population expansion following the retreat of the extensive glaciation period (0.5 to 0.175 Ma).

Genetic diversity of the lichen-forming alga, Diplosphaera chodatii, in North America and Europe

2013 ◽  
Vol 45 (6) ◽  
pp. 799-813 ◽  
Author(s):  
Kyle M. FONTAINE ◽  
Elfie STOCKER-WÖRGÖTTER ◽  
Tom BOOTH ◽  
Michele D. PIERCEY-NORMORE
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Gene Flow ◽  
North America ◽  
Isolation By Distance ◽  
Water Level Fluctuations ◽  
Free Living ◽  
Climatic Zones ◽  
Algal Symbiont ◽  
Low Levels

AbstractDermatocarpon luridum is a subaquatic lichen which is distributed within temperate climatic zones around the world. It colonizes rock substrata along the shoreline of lakes and rivers of watersheds that regularly experience water level fluctuations. The mycobiont produces perithecia with small, simple spores that are thought to be wind dispersed. The photobiont, Diplosphaera chodatii, occurs both free-living and lichenized but little is known about its distribution and dispersal. The goal of this study was to compare the population structure of the photobiont from lakes and rivers in central North America with those of Europe. Specimens were collected in Manitoba, Canada and Austria. Population structure of the algal symbiont was assessed using the internal transcribed spacer (ITS) of ribosomal DNA (rDNA) and actin gene sequences. Results showed that genetic diversity and gene flow was high within local populations, but gene flow was low between continental populations. Low levels of gene flow between the most distant populations support the isolation-by-distance theory. The photobiont on both continents is also reported to be the photobiont for other lichen species contributing to photobiont availability for D. luridum.

scholarly journals Large-scale geographic survey provides insights into the colonization history of a major aphid pest on its cultivated apple host in Europe, North America and North Africa

2020 ◽  
Author(s):  
S.G. Olvera-Vazquez ◽  
C. Remoue ◽  
A. Venon ◽  
A. Rousselet ◽  
O. Grandcolas ◽  
...  
Keyword(s):  
Gene Flow ◽  
North America ◽  
Genetic Differentiation ◽  
North Africa ◽  
Large Scale ◽  
Demographic History ◽  
High Genetic Diversity ◽  
The North ◽  
The Us ◽  
History Of

With frequent host shifts involving the colonization of new hosts across large geographical ranges, crop pests are good models for examining the mechanisms of rapid colonization. The microbial partners of pest insects may be involved or affected by colonization, which has been little studied so far. We investigated the demographic history of the rosy apple aphid, Dysaphis plantaginea, a major pest of the cultivated apple (Malus domestica) in Europe, North Africa and North America, as well as the diversity of its endosymbiotic bacterial community. We genotyped a comprehensive sample of 714 colonies from Europe, Morocco and the US using mitochondrial (CytB and CO1), bacterial (16s rRNA and TrnpB), and 30 microsatellite markers. We detected five populations spread across the US, Morocco, Western and Eastern Europe, and Spain. Populations showed weak genetic differentiation and high genetic diversity, except the Moroccan and the North American that are likely the result of recent colonization events. Coalescent-based inferences releaved high levels of gene flow among populations during the colonization, but did not allow determining the sequence of colonization of Europe, America and Morroco by D. plantaginea, likely because of the weak genetic differentiation and the occurrence of gene flow among populations. Finally, we found that D. plantaginea rarely hosts any other endosymbiotic bacteria than its obligate nutritional symbiont Buchnera aphidicola. This suggests that secondary endosymbionts did not play any role in the rapid spread of the rosy apple aphid. These findings have fundamental importance for understanding pest colonization processes and implications for sustainable pest control programs.

Canada lynx gene flow across a mountain transition zone in western North America

2020 ◽  
Author(s):  
Cristen M Watt ◽  
Elizabeth M Kierepka ◽  
Catarina C. Ferreira ◽  
Erin L Koen ◽  
Jeffrey R. Row ◽  
...  
Keyword(s):  
Gene Flow ◽  
North America ◽  
Rocky Mountains ◽  
Forest Cover ◽  
Geographic Distance ◽  
Lynx Lynx ◽  
Western North America ◽  
Ecological Divergence ◽  
Canada Lynx ◽  
Barrier Effects

Mountain ecotones have the potential to cause multiple patterns in divergence, from simple barrier effects to more fundamental ecological divergence. Most work in mountain ecotones in North America has focused on reinforcement between refugial populations, making prediction of how mountains impact species that are not restricted to separate glacial refugia remains difficult. This study focused on the Canada lynx (Lynx canadensis Kerr, 1792), a highly mobile felid considered to be a habitat and dietary specialist. Specifically, we used 14 microsatellite loci and landscape genetic tools to investigate if the Rocky Mountains and associated climatic transitions influence lynx genetic differentiation in western North America. Although lynx exhibited high gene flow across the region, analyses detected structuring of neutral genetic variation across our study area. Gene flow for lynx most strongly related to temperature and elevation compared to other landscape variables (terrain roughness, percent forest cover, and habitat suitability index) and geographic distance alone. Overall, genetic structure in lynx is most consistent with barrier effects created by the Rocky Mountains rather than ecological divergence. Furthermore, warmer temperatures had a measurable impact on gene flow, which suggests connectivity may further decrease in peripheral or fragmented populations as climate warms.

scholarly journals Phylogeography of the American Woodcock (Scolopax Minor): Are Management Units Based on Band Recovery Data Reflected in Genetically Based Management Units?

The Auk ◽  
2005 ◽  
Vol 122 (4) ◽  
pp. 1149-1160
Author(s):  
Judith M. Rhymer ◽  
Daniel G. McAuley ◽  
Heather L. Ziel
Keyword(s):  
Gene Flow ◽  
North America ◽  
Haplotype Diversity ◽  
Bird Species ◽  
Population Expansion ◽  
Phylogeographic Structure ◽  
Eastern Region ◽  
Management Units ◽  
American Woodcock ◽  
Scolopax Minor

Abstract Information on population connectivity throughout the annual cycle has become more crucial, because populations of many migratory birds are in decline. One such species is the American Woodcock (Scolopax minor), which inhabits early-successional forests in eastern North America. Although band recoveries have proved useful for dividing populations of this game bird species into an Eastern Region and Central Region for management purposes, these data do not provide enough detail to determine the breeding population of origin of birds recovered on stopover and wintering areas. To obtain more fine-scale data, we undertook a phylogeographic study of American Woodcock populations throughout their primary breeding range in the eastern United States and Canada using mitochondrial DNA (mtDNA) sequences from the hypervariable control region I (CRI) and ND6 gene. Despite high haplotype diversity, nucleotide diversity was low and there was no phylogeographic structure among American Woodcock populations across the species range, with birds from many states and provinces in both management regions sharing identical haplotypes. Results suggest recent or ongoing gene flow among populations, with asymmetric movement of birds between migration flyways. As has been demonstrated for several other avian species in North America, American Woodcock appear to have undergone a rapid population expansion following the late Pleistocene glacial retreat. Thus, a combination of historical demographic factors and recent or ongoing gene flow mask any population structure based on mtDNA that might accrue from philopatry to breeding areas observed in studies of marked birds. Phylogéographie de Scolopax minor: Est-ce que les Unités de Gestion Basées sur les Données de Retour de Bagues Reflètent les Unités de Gestion Basées sur la Génétique?

Population biology of the chestnut blight fungus, Cryphonectria parasitica

1995 ◽  
Vol 73 (S1) ◽  
pp. 311-319 ◽  
Author(s):  
Michael G. Milgroom
Keyword(s):  
Gene Flow ◽  
North America ◽  
Population Biology ◽  
Random Mating ◽  
Cryphonectria Parasitica ◽  
Vegetative Compatibility ◽  
Chestnut Blight ◽  
Vegetative Compatibility Groups ◽  
Chestnut Blight Fungus ◽  
Endothia Parasitica

Interest in the population biology of the chestnut blight fungus Cryphonectria parasitica has been motivated largely by the potential for biological control of chestnut blight with fungal viruses that cause hypovirulence. Earlier studies gave valuable insights into the correlation between diversity of vegetative compatibility groups and transmission of hypovirulence viruses. However, inferences about evolutionary processes affecting populations were not possible because vegetative compatibility groups are not genetically defined. Using restriction fragment length polymorphism markers, however, progress has been made in studying the origin of C. parasitica in North America, gene flow among populations, dispersal within populations, and recombination and the mating system. Cryphonectria parasitica populations in North America are genetically more similar to populations in Japan than in China, which is consistent with previous speculations that this fungus was introduced from Japan. Populations in China and Japan are quite different, suggesting little or no gene flow between these areas. Restricted gene flow and genetic drift are probably the dominant evolutionary forces shaping North American populations, with approximately 20% of gene diversity due to differences among populations (GST = 0.20). Two populations of C. parasitica in Michigan and one population in Italy are primarily clonal in structure. In contrast, sexual reproduction appears to be common in populations in eastern North America, although most of these populations deviate significantly from random mating. Deviations from random mating are most likely due to self-fertilization (uniparental inbreeding), restricted dispersal of male gametes, and mating between individuals that are more closely related genetically than would be expected by chance (biparental inbreeding). Aggregations of similar genotypes in space suggest that populations of C. parasitica may be structured into genetic neighborhoods by restricted dispersal. Future research efforts in this system will explore isolation by distance and address questions of hypovirulence virus coevolution with its fungal host. Key words: Cryphonectria parasitica, Endothia parasitica, chestnut blight, genetic neighbourhoods, inbreeding.

Genetic structure and gene flow among European corn borer populations from the Great Plains to the Appalachians of North America

2011 ◽  
Vol 13 (4) ◽  
pp. 383-393 ◽  
Author(s):  
Kyung S. Kim ◽  
Brad S. Coates ◽  
Mark J. Bagley ◽  
Richard L. Hellmich ◽  
Thomas W. Sappington
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
North America ◽  
Great Plains ◽  
European Corn Borer ◽  
Corn Borer

scholarly journals Barrier to Gene Flow Between Eastern and Western Populations of Cronartium ribicola in North America

2000 ◽  
Vol 90 (10) ◽  
pp. 1073-1078 ◽  
Author(s):  
R. C. Hamelin ◽  
R. S. Hunt ◽  
B. W. Geils ◽  
G. D. Jensen ◽  
V. Jacobi ◽  
...  
Keyword(s):  
Gene Flow ◽  
New Mexico ◽  
North America ◽  
Random Amplified Polymorphic Dna ◽  
Principal Component ◽  
Genetic Distances ◽  
Group Method ◽  
Cronartium Ribicola ◽  
Western North America ◽  
Pair Group

The population structure of Cronartium ribicola from eastern and western North America was studied to test the null hypothesis that populations are panmictic across the continent. Random amplified polymorphic DNA markers previously characterized in eastern populations were mostly fixed in western populations, yielding high levels of genetic differentiation between eastern and western populations (φst = 0.55; θ = 0.36; P < 0.001). An unweighted pair-group method, arithmetic mean dendro-gram based on genetic distances separated the four eastern and four western populations into two distinct clusters along geographic lines. Similarly, a principal component analysis using marker frequency yielded one cluster of eastern populations and a second cluster of western populations. The population from New Mexico was clearly within the western cluster in both analyses, confirming the western origin of this recent introduction. This population was completely fixed (Hj = 0.000; n = 45) at all loci suggesting a severe recent population bottleneck. Genetic distances were low among populations of western North America (0.00 to 0.02) and among eastern populations (0.00 to 0.02), indicating a very similar genetic composition. In contrast, genetic distances between eastern and western populations were large, and all were significantly different from 0 (0.07 to 0.19; P < 0.001). Indirect estimates of migration were high among western populations, including the number of migrants among pairs of populations (Nm > 1) between New Mexico and British Columbia populations, but were smaller than one migrant per generation between eastern and western populations. These results suggest the presence of a barrier to gene flow between C. ribicola populations from eastern and western North America.

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