scholarly journals X-ray computed tomography to predict soil N2 O production via bacterial denitrification and N2 O emission in contrasting bioenergy cropping systems

GCB Bioenergy ◽  
2018 ◽  
Vol 10 (11) ◽  
pp. 894-909 ◽  
Author(s):  
Alexandra N. Kravchenko ◽  
Andrey K. Guber ◽  
Michelle Y. Quigley ◽  
John Koestel ◽  
Hasand Gandhi ◽  
...  
2021 ◽  
Author(s):  
Archana Juyal ◽  
Andrey Guber ◽  
Alexandra Kravchenko

<p>Extracellular enzymes play an important role in soil biochemical processes as they are the key regulators of litter and soil organic matter degradation. However, understanding of the factors influencing their activity and fate in soil is still limited. In this study, we examined the relationship between soil pores and spatial patterns of extracellular enzyme activity in soils from two bioenergy cropping systems: monoculture switchgrass (Panicum virgatum L.) and restored prairie. Intact soil cores (5 cm Ø x 5 cm height) were collected at two contrasting topographical positions (depression and slope) within large topographically diverse fields where the switchgrass and prairie were grown since 2008. The cores were subjected to X-ray computed tomography scanning at 18 µm resolution. After the scanning, a switchgrass seedling was planted in these cores and allowed to grow for three months. Then the plants were terminated and the cores were rescanned. Pore characteristics were assessed using the image information, and b-glucosidase activity was characterized via 2D zymography. Preliminary results showed that soil of the prairie system had greater volumes of 60-180 mm Ø size pores compared to monoculture switchgrass system. However, enzyme activity was higher in the soil of monoculture switchgrass. Our preliminary results indicate that the soil pore size distribution and enzyme activity differ depending on the type of the bioenergy cropping system. Further analysis is conducted to determine microbial abundance, total C in soil and microbial biomass in these cropping systems to understand the effect of pores on microbial activity associated with C processes in soil.</p>


1999 ◽  
Vol 11 (1) ◽  
pp. 199-211
Author(s):  
J. M. Winter ◽  
R. E. Green ◽  
A. M. Waters ◽  
W. H. Green

2013 ◽  
Vol 19 (S2) ◽  
pp. 630-631
Author(s):  
P. Mandal ◽  
W.K. Epting ◽  
S. Litster

Extended abstract of a paper presented at Microscopy and Microanalysis 2013 in Indianapolis, Indiana, USA, August 4 – August 8, 2013.


Sensors ◽  
2021 ◽  
Vol 21 (2) ◽  
pp. 591
Author(s):  
Manasavee Lohvithee ◽  
Wenjuan Sun ◽  
Stephane Chretien ◽  
Manuchehr Soleimani

In this paper, a computer-aided training method for hyperparameter selection of limited data X-ray computed tomography (XCT) reconstruction was proposed. The proposed method employed the ant colony optimisation (ACO) approach to assist in hyperparameter selection for the adaptive-weighted projection-controlled steepest descent (AwPCSD) algorithm, which is a total-variation (TV) based regularisation algorithm. During the implementation, there was a colony of artificial ants that swarm through the AwPCSD algorithm. Each ant chose a set of hyperparameters required for its iterative CT reconstruction and the correlation coefficient (CC) score was given for reconstructed images compared to the reference image. A colony of ants in one generation left a pheromone through its chosen path representing a choice of hyperparameters. Higher score means stronger pheromones/probabilities to attract more ants in the next generations. At the end of the implementation, the hyperparameter configuration with the highest score was chosen as an optimal set of hyperparameters. In the experimental results section, the reconstruction using hyperparameters from the proposed method was compared with results from three other cases: the conjugate gradient least square (CGLS), the AwPCSD algorithm using the set of arbitrary hyperparameters and the cross-validation method.The experiments showed that the results from the proposed method were superior to those of the CGLS algorithm and the AwPCSD algorithm using the set of arbitrary hyperparameters. Although the results of the ACO algorithm were slightly inferior to those of the cross-validation method as measured by the quantitative metrics, the ACO algorithm was over 10 times faster than cross—Validation. The optimal set of hyperparameters from the proposed method was also robust against an increase of noise in the data and can be applicable to different imaging samples with similar context. The ACO approach in the proposed method was able to identify optimal values of hyperparameters for a dataset and, as a result, produced a good quality reconstructed image from limited number of projection data. The proposed method in this work successfully solves a problem of hyperparameters selection, which is a major challenge in an implementation of TV based reconstruction algorithms.


2021 ◽  
Author(s):  
Katherine A. Wolcott ◽  
Guillaume Chomicki ◽  
Yannick M. Staedler ◽  
Krystyna Wasylikowa ◽  
Mark Nesbitt ◽  
...  

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