Sparsity‐aware support vector data description reinforced by expectation maximization

2021 ◽  
Author(s):  
Mahdie Eghdami ◽  
Hadi Sadoghi Yazdi ◽  
Neshat Salehi
Keyword(s):  
Expectation Maximization ◽  
Support Vector ◽  
Support Vector Data Description ◽  
Vector Data ◽  
Data Description

MK-FSVM-SVDD: A Multiple Kernel-based Fuzzy SVM Model for Predicting DNA-binding Proteins via Support Vector Data Description

2020 ◽  
Vol 15 ◽  
Author(s):  
Yi Zou ◽  
Hongjie Wu ◽  
Xiaoyi Guo ◽  
Li Peng ◽  
Yijie Ding ◽  
...  
Keyword(s):  
Dna Binding ◽  
Binding Proteins ◽  
Detection Efficiency ◽  
Dna Binding Proteins ◽  
Support Vector ◽  
Support Vector Data Description ◽  
Vector Data ◽  
Data Description ◽  
Multiple Kernel ◽  
Svm Model

Background: Detecting DNA-binding proetins (DBPs) based on biological and chemical methods is time consuming and expensive. Objective: In recent years, the rise of computational biology methods based on Machine Learning (ML) has greatly improved the detection efficiency of DBPs. Method: In this study, Multiple Kernel-based Fuzzy SVM Model with Support Vector Data Description (MK-FSVM-SVDD) is proposed to predict DBPs. Firstly, sex features are extracted from protein sequence. Secondly, multiple kernels are constructed via these sequence feature. Than, multiple kernels are integrated by Centered Kernel Alignment-based Multiple Kernel Learning (CKA-MKL). Next, fuzzy membership scores of training samples are calculated with Support Vector Data Description (SVDD). FSVM is trained and employed to detect new DBPs. Results: Our model is test on several benchmark datasets. Compared with other methods, MK-FSVM-SVDD achieves best Matthew's Correlation Coefficient (MCC) on PDB186 (0.7250) and PDB2272 (0.5476). Conclusion: We can conclude that MK-FSVM-SVDD is more suitable than common SVM, as the classifier for DNA-binding proteins identification.

Bridge health anomaly detection using deep support vector data description

2021 ◽  
Author(s):  
JianXi Yang ◽  
Fei Yang ◽  
Likai Zhang ◽  
Ren Li ◽  
Shixin Jiang ◽  
...  
Keyword(s):  
Anomaly Detection ◽  
Support Vector ◽  
Support Vector Data Description ◽  
Vector Data ◽  
Data Description ◽  
Deep Support
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