scholarly journals First Attempt to Identify and Map QTLs Associated with Promiscuous Nodulation in Soybean

2019 ◽  
Author(s):  
Eric E. Agoyi ◽  
John B. Tumuhairwe ◽  
Godfree Chigeza ◽  
Phinehas Tukamuhabwa ◽  
Brian W. Diers
Keyword(s):  
Dominance Effect ◽  
Genotyping By Sequencing ◽  
Dry Weight ◽  
Marker Assisted Breeding ◽  
Fresh Weight ◽  
Sequencing Platform ◽  
Promiscuous Soybean ◽  
Starting Point ◽  
Qtl Identification ◽  
Selection Of

ABSTRACTTo inform possibility of conducting marker assisted breeding of promiscuous soybean varieties, this study used 92 F2 lines from biparental cross to identify QTLs associated with promiscuous nodulation in soybean. GBS; genotyping by sequencing platform was used to generate SNPs through the pipeline 2 in TASSEL 5.0, Bowtie2 version 2.2.8 for tag alignment, Beagle version 4.1 to impute missing SNPs and R-QTL package in R for QTL identification. Four nodulation traits were assessedviznumber of nodules (NN), percent of effective nodules (NE), fresh weight and dry weight of nodules (NFW and NDW). Two QTLs were identified on chromosomes 10 and 13. Both QTLs were associated with NN, only QTL13 was associated NE and only QTL10 was associated with nodule ‘weights. It was observed that NN, NFW and NDW shared QTL10 and NN and NE share QTL13 allowing hypothetize on the existence of pleiotropic genes in those those two regions. Over dominance effect was observed for QTL10 and non additive effect for QTL13. The paper recommend investigations be pursued to validate those QTLs and set foundation for marker assisted selection of promiscuous soybean varieties. Also these findings could serve as starting point for gene cloning to better understand nodulation trait in soybean.

scholarly journals Fertilizer and Cultivar Selection of Lettuce, Basil, and Swiss Chard for Hydroponic Production

2019 ◽  
Vol 29 (1) ◽  
pp. 50-56 ◽  
Author(s):  
Hardeep Singh ◽  
Bruce Dunn ◽  
Mark Payton ◽  
Lynn Brandenberger
Keyword(s):  
Dry Weight ◽  
Water Soluble ◽  
Nutrient Concentrations ◽  
Fresh Weight ◽  
Cultivar Selection ◽  
Nutrient Film Technique ◽  
Swiss Chard ◽  
Significant Difference ◽  
Optimum Production ◽  
Selection Of

Nutrient-film technique (NFT) trials were conducted to quantify the effect of two different water-soluble hydroponic fertilizers (5N–4.8P–21.6K and 5N–5.2P–21.6K) on different cultivars of lettuce (Lactuca sativa), basil (Ocimum basilicum), and swiss chard (Beta vulgaris). Results indicated swiss chard yield was affected only by cultivars, with Fordhook Giant producing the greatest fresh weight across fertilizer treatments. For lettuce production, interaction between fertilizers and cultivars was significant. ‘Mirlo’ and ‘Rubysky’ had greater growth compared with other cultivars in both fertilizers, whereas Dragoon performed well using 5N–4.8P–21.6K, but not 5N–5.2P–21.6K. For basil, dry weight production showed a significant interaction between fertilizers and cultivars. ‘Largeleaf’ produced greater dry weight with 5N–4.8P–21.6K, whereas ‘Lemon’ produced greater dry weight with 5N–5.2P–21.6K. For nutrient concentration of leaves, the concentrations were within the recommended range for lettuce when fertilized with 5N–5.2P–21.6K. Nutrient concentrations varied by nutrient from the recommended range for basil, but there was no significant difference between fertilizers. For swiss chard, the nutrient concentrations were in the recommended range and there was no difference between fertilizers. Therefore, growers may need to use more than one type of fertilizer for different lettuce and basil cultivars for optimum production, whereas swiss chard cultivars can be selected based on yield regardless of fertilizer.

scholarly journals Analysis of Environmental Conditions Effect in the Phytochemical Composition of Potato (Solanum tuberosum) Cultivars

Plants ◽  
2020 ◽  
Vol 9 (7) ◽  
pp. 815 ◽  
Author(s):  
Iván Samaniego ◽  
Susana Espin ◽  
Xavier Cuesta ◽  
Verónica Arias ◽  
Armando Rubio ◽  
...  
Keyword(s):  
Solanum Tuberosum ◽  
Environmental Conditions ◽  
Dry Weight ◽  
Crop Productivity ◽  
Fresh Weight ◽  
Total Polyphenols ◽  
Total Carotenoids ◽  
Total Anthocyanins ◽  
Phytochemical Components ◽  
Selection Of

Crop productivity and food quality are affected by environmental conditions. The objective of this work was to evaluate the effect of the environment on the concentration of phytochemical components in several potato (Solanum tuberosum) cultivars. The content of vitamin C (ascorbic acid, AA), the total carotenoids content (TCC), the total polyphenols content (TPC), and the total anthocyanins content (TAC) of 11 potatoes varieties grown in Ecuador (Cutuglahua, Pujilí, and Pilahuín) was measured by the spectrophotometric method. The antioxidant capacity (AC) of potato cultivars was evaluated by the ABTS method. The AA concentration ranged between 12.67 to 39.49 mg/100g fresh weight (FW), the TCC ranged between 50.00 and 1043.50 μg/100g FW, the TPC ranged between 0.41 and 3.25 g of gallic acid equivalents (GAE)/kg dry weight (DW), the TAC ranged between 2.74 and 172.53 μg/g FW and finally the AC ranged between 36.80 and 789.19 μg of trolox equivalents (TE)/g FW. Genotypes (G), location (L), and interaction (G x L) were significant at p < 0.01. The genotype (G) showed a greater variation in the phytochemical contents. AA and TPC showed the highest correlation with the AC. A selection of genotypes with these characteristics can be used to develop germplasms with a high AC.

Relations Between Growth Parameters in Oil Palm Seedlings Grown in Polybags

1980 ◽  
Vol 16 (3) ◽  
pp. 275-278 ◽  
Author(s):  
E. O. Lucas
Keyword(s):  
Leaf Area ◽  
Oil Palm ◽  
Growth Parameters ◽  
Weight Ratio ◽  
Dry Weight ◽  
Seedling Height ◽  
Fresh Weight ◽  
Area Index ◽  
Non Destructive ◽  
Selection Of

SUMMARYThe relation between some growth parameters in polybag oil palm nursery seedlings were assessed. ‘Non-destructive’ parameters such as leaf number, seedling height and girth were highly and positively correlated with one another and with the dry weight of seedlings. Amongst the ‘destructive’ parameters only leaf area, height/weight ratio and fresh weight were positively correlated with dry weight. The Leaf Area Index was poorly correlated with other parameters examined. The relevance of these findings to the selection of oil palm seedlings for transplanting into the field is discussed.

scholarly journals A Simple and Nondestructive Technique for Estimating the Newly Grown Roots of Potted Phalaenopsis Plants

HortScience ◽  
2013 ◽  
Vol 48 (3) ◽  
pp. 318-321
Author(s):  
Keng Heng Chang ◽  
Kuan Ting Chang ◽  
Ren Shih Chung ◽  
Chun Tang Lu ◽  
Ting Fang Hsieh
Keyword(s):  
Mean Squared Error ◽  
Linear Equations ◽  
Dry Weight ◽  
Fresh Weight ◽  
Nondestructive Technique ◽  
Predictive Equations ◽  
Squared Error ◽  
Cultivation Period ◽  
Nondestructive Estimation ◽  
Selection Of

A simple and nondestructive technique, based on the line intersect principle, was developed for estimating simultaneously more traits of the newly grown roots of potted Phalaenopsis plants. Two kinds of root distribution counting pot (RDCP) were used in the present study, namely, RDCP with a large drawing grid (RDCPL) and RDCP with a small drawing grid (RDCPS). Fifty Phalaenopsis plants were randomly sampled during the cultivation period of two to eight months after transplantation for each kind of pots. The grid number of the newly grown roots of each plant was determined by both RDCPS and RDCPL, followed by measurement of other traits such as number, fresh weight, dry weight, and length of the roots. Data were subjected to regression analyses for the selection of predictive equations. The results revealed that the grid number determined by RDCPS correlated better with the traits of the newly grown roots of potted Phalaenopsis [coefficients of determination R2 = 0.71 to 0.90; low mean squared error (MSE)] than the grid number obtained with RDCPL (R2 = 0.66 to 0.83; high MSE). Without tedious and time-consuming measurements, the four linear equations obtained with RDCPS can be a simple and nondestructive estimation for predicting the number, fresh weight, dry weight, and length of the developing roots of Phalaenopsis plants grown in pots. Another 48 Phalaenopsis plants were randomly sampled during the cultivation period of two to eight months after transplantation for the validation of selected predictive equations. The accuracy of the predictive equations of the traits of newly grown roots obtained with RDCPS was different in the following order: length > dry weight > fresh weight > number.

Tobacco’s Appeal to the Senses and the Early Modern Smoker’s Still Life

2020 ◽  
pp. 123-150
Author(s):  
Julia Saviello
Keyword(s):  
Still Life ◽  
Sense Data ◽  
Complex Image ◽  
Starting Point ◽  
Depth Analysis ◽  
Tobacco Pipes ◽  
Five Senses ◽  
The Senses ◽  
Cut Tobacco ◽  
Selection Of

Smell and taste – of the five senses these are the two most strongly stimulated by smoking tobacco. The article presents an in-depth analysis of the reflection of both these forms of sensory perception in textual and visual sources concerning the early consumption of the herb. In a first step, tobacco’s changing reception, first as medicine and then as stimulant, is traced through the years of its increasing distribution in Europe, starting in the middle of the 16th century. As this overview reveals, at that time the still little known substance gave rise to new forms of sense perception. Following recent studies on smell and gustation, which have stressed the need to take into account the interactions between these senses, the article probes the manifold stimulation of the senses by tobacco with reference to allegorical representations and genre scenes addressing the five senses. The smoking of tobacco was thematized in both of these art forms as a means of visualizing either smell or taste. Yet, these depictions show no indication of any deliberate engagement with the exchange of sense data between mouth and nose. The question posed at the end of this paper is whether this holds true also for early smoker’s still lifes. In the so-called toebakjes or rookertjes, a subgenre of stilllife painting that, like tobacco, was still a novelty at the beginning of the 17th century, various smoking paraphernalia – such as rolled or cut tobacco, pipes and tins – are arrayed with various kinds of foods and drinks. Finally, the article addresses a selection of such smoker’s still lifes, using the toebakje by Pieter Claesz., probably the first of its kind, as a starting point and the work by Georg Flegel as a comparative example. Through their selection of objects, both offer a complex image of how tobacco engages different senses.

Design of Inhibitors for Glyceraldehyde-3-phosphate Dehydrogenase (GAPDH) Enzyme of Leishmania mexicana

2020 ◽  
Vol 16 (6) ◽  
pp. 784-795
Author(s):  
Krisnna M.A. Alves ◽  
Fábio José Bonfim Cardoso ◽  
Kathia M. Honorio ◽  
Fábio A. de Molfetta
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Binding Site ◽  
Point Of View ◽  
New Drugs ◽  
Leishmania Mexicana ◽  
Receptor Complexes ◽  
Starting Point ◽  
Dynamics Simulations ◽  
Selection Of

Background:: Leishmaniosis is a neglected tropical disease and glyceraldehyde 3- phosphate dehydrogenase (GAPDH) is a key enzyme in the design of new drugs to fight this disease. Objective:: The present study aimed to evaluate potential inhibitors of GAPDH enzyme found in Leishmania mexicana (L. mexicana). Methods: A search for novel antileishmanial molecules was carried out based on similarities from the pharmacophoric point of view related to the binding site of the crystallographic enzyme using the ZINCPharmer server. The molecules selected in this screening were subjected to molecular docking and molecular dynamics simulations. Results:: Consensual analysis of the docking energy values was performed, resulting in the selection of ten compounds. These ligand-receptor complexes were visually inspected in order to analyze the main interactions and subjected to toxicophoric evaluation, culminating in the selection of three compounds, which were subsequently submitted to molecular dynamics simulations. The docking results showed that the selected compounds interacted with GAPDH from L. mexicana, especially by hydrogen bonds with Cys166, Arg249, His194, Thr167, and Thr226. From the results obtained from molecular dynamics, it was observed that one of the loop regions, corresponding to the residues 195-222, can be related to the fitting of the substrate at the binding site, assisting in the positioning and the molecular recognition via residues responsible for the catalytic activity. Conclusion:: he use of molecular modeling techniques enabled the identification of promising compounds as inhibitors of the GAPDH enzyme from L. mexicana, and the results obtained here can serve as a starting point to design new and more effective compounds than those currently available.

scholarly journals Growth and Antioxidant Responses in Iron-Biofortified Lentil under Cadmium Stress

Toxics ◽  
2021 ◽  
Vol 9 (8) ◽  
pp. 182
Author(s):  
Ruchi Bansal ◽  
Swati Priya ◽  
Harsh Kumar Dikshit ◽  
Sherry Rachel Jacob ◽  
Mahesh Rao ◽  
...  
Keyword(s):  
Growth Parameters ◽  
Dry Weight ◽  
Cadmium Stress ◽  
Antioxidant Enzyme Activities ◽  
Limited Information ◽  
Cd Stress ◽  
Fresh Weight ◽  
Cd Uptake ◽  
Cd Tolerance ◽  
Controlled Conditions

Cadmium (Cd) is a hazardous heavy metal, toxic to our ecosystem even at low concentrations. Cd stress negatively affects plant growth and development by triggering oxidative stress. Limited information is available on the role of iron (Fe) in ameliorating Cd stress tolerance in legumes. This study assessed the effect of Cd stress in two lentil (Lens culinaris Medik.) varieties differing in seed Fe concentration (L4717 (Fe-biofortified) and JL3) under controlled conditions. Six biochemical traits, five growth parameters, and Cd uptake were recorded at the seedling stage (21 days after sowing) in the studied genotypes grown under controlled conditions at two levels (100 μM and 200 μM) of cadmium chloride (CdCl2). The studied traits revealed significant genotype, treatment, and genotype × treatment interactions. Cd-induced oxidative damage led to the accumulation of hydrogen peroxide (H2O2) and malondialdehyde in both genotypes. JL3 accumulated 77.1% more H2O2 and 75% more lipid peroxidation products than L4717 at the high Cd level. Antioxidant enzyme activities increased in response to Cd stress, with significant genotype, treatment, and genotype × treatment interactions (p < 0.01). L4717 had remarkably higher catalase (40.5%), peroxidase (43.9%), superoxide dismutase (31.7%), and glutathione reductase (47.3%) activities than JL3 under high Cd conditions. In addition, L4717 sustained better growth in terms of fresh weight and dry weight than JL3 under stress. JL3 exhibited high Cd uptake (14.87 mg g−1 fresh weight) compared to L4717 (7.32 mg g−1 fresh weight). The study concluded that the Fe-biofortified lentil genotype L4717 exhibited Cd tolerance by inciting an efficient antioxidative response to Cd toxicity. Further studies are required to elucidate the possibility of seed Fe content as a surrogacy trait for Cd tolerance.

scholarly journals Genetic Dissection of Phosphorous Uptake and Utilization Efficiency Traits Using GWAS in Mungbean

Agronomy ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1401
Author(s):  
Venkata Ravi Prakash Reddy ◽  
Shouvik Das ◽  
Harsh Kumar Dikshit ◽  
Gyan Prakash Mishra ◽  
Muraleedhar S. Aski ◽  
...  
Keyword(s):  
Genome Wide Association Study ◽  
Genotyping By Sequencing ◽  
Dry Weight ◽  
P Uptake ◽  
Utilization Efficiency ◽  
Genetic Dissection ◽  
P Deficiency ◽  
P Utilization ◽  
P Utilization Efficiency ◽  
Phosphorous Uptake

Mungbean (Vignaradiata L. Wilczek) is an early maturing legume grown predominantly in Asia for its protein-rich seeds. P deficiency can lead to several physiological disorders which ultimately result in a low grain yield in mungbean. The genetic dissection of PUpE (Puptake efficiency) and PUtE (P utilization efficiency) traits are essential for breeding mungbean varieties with a high P uptake and utilization efficiency. The study involves an association mapping panel consisting of 120 mungbean genotypes which were phenotyped for total dry weight, P concentration, total P uptake, and P utilization efficiency under low P (LP) and normal P (NP) conditions in a hydroponic system. A genotyping-by-sequencing (GBS) based genome-wide association study (GWAS) approach was employed to dissect the complexity of PUpE and PUtE traits at the genetic level in mungbean. This has identified 116 SNPs in 61 protein-coding genes and of these, 16 have been found to enhance phosphorous uptake and utilization efficiency in mungbeans. We identified six genes with a high expression (VRADI01G04370, VRADI05G20860, VRADI06G12490, VRADI08G20910, VRADI08G00070 and VRADI09G09030) in root, shoot apical meristem and leaf, indicating their role in the regulation of P uptake and utilization efficiency in mungbean. The SNPs present in three genes have also been validated using a Sanger sequencing approach.

scholarly journals Applications of plant growth promoting bacteria and Trichoderma spp. for controlling Orobanche crenata in faba bean

2020 ◽  
Vol 44 (1) ◽  
Author(s):  
Mahmoud Ahmed Touny El-Dabaa ◽  
Hassan Abd-El-Khair
Keyword(s):  
Plant Growth ◽  
Faba Bean ◽  
Growth Parameters ◽  
Dry Weight ◽  
Research Centre ◽  
Plant Growth Promoting Bacteria ◽  
Fresh Weight ◽  
Orobanche Crenata ◽  
Trichoderma Spp ◽  
Shoot Dry Weight

Abstract Background Orobanche crenata is an obligate root parasite belonging to Orbanchaceae. Broomrape causes great damage to the faba bean. Several attempts were applied for controlling parasitic weeds. So, the aim of this work is to study the application of Trichoderma spp. as well as three rhizobacteria species in comparison to herbicidal effect of Glyphosate (Glialka 48% WSC) for controlling broomrape infesting faba bean (Vicia faba). Materials and methods Three pot experiments were carried out in the greenhouse of the National Research Centre, Dokki, Giza, Egypt during two successive winter seasons. Trichoderma inocula were adjusted to 3.6 × 108 propagules/ml and the bacterium inocula were adjusted at 107–109 colony-forming unit (CFU)/ml. All treatments were applied, before 1 week of sowing, at rate of 50 ml per pot in experiments I and II, while 100 ml per pot in experiment III. Results Trichoderma spp. (T. harzianum, T. viride and T. vierns) as well as three rhizobacteria species (Pseudomonas fluorescens, Bacillus subtilis and Bacillus pumilus) enhanced the growth parameters in faba bean plants, i.e. shoot length, shoot fresh weight, shoot dry weight and leaf number in the first experiment when applied without O. crenata infection. In the second experiment, all bio-control could protect plants against O. crenata infection, where it had better juvenile number reduction, than glyphosate after 2 months of application. Both B. subtilis and B. pumilus had the highest reduction to juvenile fresh weight, while their effect was equal to herbicide for juvenile dry weight, respectively. The bio-control agents had high effects until the 4th month, but it was less than that of the herbicide. In experiment III, the bio-control agents could highly reduce the juvenile parameters after 2 months, as well as juvenile fresh weight and juvenile dry weight after 4 months, than the herbicide, respectively. The bio-control agents were effective until 6 months, but less than the herbicide effect. All bio-control treatments highly increased the plant growth parameters, than the herbicide. Conclusion The application of Trichoderma spp. as well as rhizobacteria species could play an important role in controlling broomrape in faba bean as a natural bioherbicide.

scholarly journals Effect of Organic Manures on Growth, Rhizome Yield and Quality Attributes of Turmeric (Curcuma longa L.)

2012 ◽  
Vol 10 (1) ◽  
pp. 16-22 ◽  
Author(s):  
M. Z. U. Kamal ◽  
M. N. Yousuf
Keyword(s):  
Leaf Area ◽  
Dry Matter ◽  
Curcuma Longa ◽  
Dry Weight ◽  
Fresh Weight ◽  
Area Index ◽  
Yield Attributes ◽  
Organic Manures ◽  
Neem Cake ◽  
Yield And Quality

The investigation was carried out to evaluate the effect of different organic manures on turmeric with reference to vegetative growth, biomass production, rhizome yield and its attributes of turmeric (Curcuma longa L.). Turmeric showed better response to the application of organic manures. Plant with neem cake application had the taller plant (79.30 cm), maximum number of tillers per plant (5.40), leaf number (5.40), leaf area (44.09) leaf area index (0.429), fresh weight of halum ( 190.05g), fresh weight of root (49.13 g), fresh weight of rhizome per plant (256.21 g) and dry weight of halum (15.21g), dry weight of root (7.32 g), dry weight of rhizome per plant (40.35 g), total dry matter yield (6.85 t ha-1) than those received other types of manures. Moreover, yield attributes such as number of mother rhizomes per plant-1 (1.75), more number of primary rhizomes per plant-1 (5.19), secondary rhizomes per plant-1 (18.03) and tertiary rhizomes per plant (7.69) were also highly accelerated by neem cake application. Similarly, the same treatment expressed the best in terms of size of mother rhizome (7.69 cm), primary rhizome (21.86 cm) and secondary rhizomes (7.05 cm).All these parameters in cumulative contributed to  produce the highest estimated fresh rhizomes yield & cured rhizomes yield (29.48 t ha-1, 5.59 t ha-1 respectively). The highest curing percentage (20.28) was observed in T3 treatment having mustard cake@ 2.0 t/ha. Thus, organic manure like neem cake was best fitted natural fertilizer for turmeric cultivation.DOI: http://dx.doi.org/10.3329/agric.v10i1.11060The Agriculturists 2012; 10(1): 16-22

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