scholarly journals Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya

2019 ◽  
Author(s):  
Joseph Gichuhi ◽  
Sevgan Subramanian ◽  
Fathiya M. Khamis ◽  
Johnnie Van den Berg ◽  
Hannalene du Plessis ◽  
...  
Keyword(s):  
Spodoptera Frugiperda ◽  
High Throughput Sequencing ◽  
Developmental Stages ◽  
Fall Armyworm ◽  
Rrna Gene ◽  
Metarhizium Rileyi ◽  
Rice Strain ◽  
Bacterial Microbiome ◽  
Abundance And Diversity ◽  
Bacterial Groups

AbstractThe invasive fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith) is a polyphagous pest that causes widespread damage particularly to maize and sorghum in Africa. The microbiome associated with S. frugiperda could play a role in their success and adaptability. However, these bacterial communities remain poorly studied, especially for S. frugiperda in Africa. We investigated the composition, abundance and diversity of microbiomes associated with larval and adult specimens of S. frugiperda collected from four maize growing regions in Kenya through high throughput sequencing of bacterial 16S rRNA gene. We identified Proteobacteria and Firmicutes as the most dominant phyla and lesser proportions of Bacteroidetes and Actinobacteria. We also observed differences in bacterial microbiome diversity between larvae and adults that are a likely indication that some prominent larval bacterial groups are lost during metamorphosis. Several bacterial groups were found in both adults and larvae suggesting that they are transmitted across developmental stages. Reads corresponding to several known entomopathogenic bacterial clades as well as the non-bacterial entomopathogen, Metarhizium rileyi (Farl.) Kepler, Rehner & Humber (2014), were observed. Mitochondrial DNA haplotyping of the S. frugiperda population in Kenya indicated the presence of both ‘Rice’ and ‘Corn’ strains, with a higher prevalence of the ‘Rice’ strain. Insights into the microbiota may ultimately provide alternative avenues for controlling of this pest.

scholarly journals Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8701 ◽  
Author(s):  
Joseph Gichuhi ◽  
Subramanian Sevgan ◽  
Fathiya Khamis ◽  
Johnnie Van den Berg ◽  
Hannalene du Plessis ◽  
...  
Keyword(s):  
Spodoptera Frugiperda ◽  
High Throughput Sequencing ◽  
Developmental Stages ◽  
Fall Armyworm ◽  
Rrna Gene ◽  
Bacterial Phyla ◽  
Metarhizium Rileyi ◽  
Rice Strain ◽  
Fungal Entomopathogen ◽  
Bacterial Groups

Background The invasive fall armyworm, Spodoptera frugiperda (J.E. Smith) is a polyphagous pest that causes widespread damage particularly to maize and sorghum in Africa. The microbiome associated with S. frugiperda could play a role in the insects’ success and adaptability. However, bacterial communities in S. frugiperda remain poorly studied. Methods We investigated the composition, abundance and diversity of microbiomes associated with larval and adult specimens of S. frugiperda collected from four maize growing regions in Kenya through high throughput sequencing of the bacterial 16S rRNA gene. The population structure of S. frugiperda in Kenya was assessed through amplification of the mitochondrial cytochrome oxidase subunit I gene. Results We identified Proteobacteria and Firmicutes as the most dominant bacterial phyla and lesser proportions of Bacteroidetes and Actinobacteria. We also observed differences in bacterial microbiome diversity between larvae and adults that are a likely indication that some prominent larval bacterial groups are lost during metamorphosis. However, several bacterial groups were found in both adults and larvae suggesting that they are transmitted across developmental stages. Reads corresponding to several known entomopathogenic bacterial clades as well as the fungal entomopathogen, Metarhizium rileyi, were observed. Mitochondrial DNA haplotyping of the S. frugiperda population in Kenya indicated the presence of both “Rice” and “Corn” strains, with a higher prevalence of the “Rice” strain.

scholarly journals Occurrence and molecular identification of an invasive rice strain of fall armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae) from Sindh, Pakistan, using mitochondrial cytochrome c oxidase I gene sequences

2021 ◽  
Author(s):  
Sumaira Yousaf ◽  
Abdul Rehman ◽  
Mariyam Masood ◽  
Kazam Ali ◽  
Nazia Suleman
Keyword(s):  
Cytochrome C ◽  
Cytochrome C Oxidase ◽  
Spodoptera Frugiperda ◽  
Fall Armyworm ◽  
Coi Gene ◽  
Invasive Pest ◽  
Mitochondrial Cytochrome ◽  
Cytochrome C Oxidase I ◽  
Gene Sequences ◽  
Rice Strain

AbstractThe fall armyworm (FAW), an invasive pest of maize, is an emerging threat in Southern Asia after America and Europe. Recently, this notorious pest has also been found in different areas of Pakistan. To assess its presence in Pakistan, a survey was carried out in the provinces of Punjab, Sindh, and Khyber Pakhtunkhwa during May–October 2019. We observed the highest incidence of FAW in Sindh with maximum impact in districts Tando-Allahyar and Hyderabad. These samples were identified as Spodoptera frugiperda on the morphological and taxonomical bases. However, morphological identification of this pest is very difficult at early larval instars. Here, we use the mitochondrial cytochrome c oxidase I (COI) gene region for the precise identification of larva of this invasive pest at species level. Two different regions of COI gene (COI-5′ and COI-3′) were used as molecular markers for the identification of this species. DNA sequence similarity searches of the obtained COI gene sequences (NCBI GenBank Accession Nos. MW241537, MW241538, MW349515, MW349516, MW349493 and MW349494) revealed that genetically it is more than 99% identical to S. frugiperda. The phylogenetic analysis indicated it as the rice-strain (R-strain). Both 3′- and 5′-fragment tree topologies showed that the collected samples of the FAW species belong to the R-strain. To the best of our knowledge, this is the first report providing molecular evidence for the existence of R-strain of S. frugiperda that was found feeding on maize crop in Sindh, Pakistan, using COI gene sequences as a marker.

scholarly journals Bacterial microbiome associated with the rhizosphere and root interior of crops in Saskatchewan, Canada

2020 ◽  
Vol 66 (1) ◽  
pp. 71-85 ◽  
Author(s):  
Jorge Cordero ◽  
J. Renato de Freitas ◽  
James J. Germida
Keyword(s):  
Bacterial Communities ◽  
Crop Production ◽  
High Throughput Sequencing ◽  
Crop Species ◽  
Associated Bacteria ◽  
Wheat Field ◽  
Sampling Locations ◽  
Bacterial Microbiome ◽  
Bacterial Groups ◽  
Selection Of

Rhizosphere and root associated bacteria are key components of plant microbiomes and influence crop production. In sustainable agriculture, it is important to investigate bacteria diversity in various plant species and how edaphic factors influence the bacterial microbiome. In this study, we used high-throughput sequencing to assess bacterial communities associated with the rhizosphere and root interior of canola, wheat, field pea, and lentil grown at four locations in Saskatchewan, Canada. Rhizosphere bacteria communities exhibited distinct profiles among crops and sampling locations. However, each crop was associated with distinct root endophytic bacterial communities, suggesting that crop species may influence the selection of root bacterial microbiome. Proteobacteria, Actinobacteria, and Bacteroidetes were the dominant phyla in the root interior, whereas Gemmatimonadetes, Firmicutes, and Acidobacteria were prevalent in the rhizosphere soil. Pseudomonas and Stenotrophomonas were predominant in the rhizosphere and root interior, whereas Acinetobacter, Arthrobacter, Rhizobium, Streptomyces, Variovorax, and Xanthomonas were dominant in the root interior of all crops. The relative abundance of specific bacterial groups in the rhizosphere correlated with soil pH and silt and organic matter contents; however, there was no correlation between root endophytes and analyzed soil properties. These results suggest that the root microbiome may be modulated by plant factors rather than soil characteristics.

scholarly journals High-throughput Sequencing Study of the Effect of Transabdominal Hysterectomy on Intestinal Flora in Patients with Uterine Fibroids

2020 ◽  
Author(s):  
Wantong Wang ◽  
Yibing Li ◽  
Qijun Wu ◽  
Xin Pan ◽  
Xinhui He ◽  
...  
Keyword(s):  
High Throughput ◽  
High Throughput Sequencing ◽  
Intestinal Flora ◽  
Uterine Fibroids ◽  
Abdominal Hysterectomy ◽  
The Body ◽  
Rrna Gene ◽  
Before And After ◽  
Abundance And Diversity ◽  
Medical University

Abstract Background: To investigate the effect of transabdominal hysterectomy on the diversity of the intestinal flora in patients with uterine fibroids. Patients with uterine fibroids were selected from September 2018 to December 2018, in the Department of Obstetrics and Gynecology, Shengjing Hospital, China Medical University, and stool specimens were collected from patients before and after surgery. Results :High-throughput sequencing of the 16S rRNA gene was used to detect the changes in microbial community structure and diversity, and the effects of total hysterectomy on the intestinal flora were further analyzed. Estrogen levels decreased after trans-abdominal hysterectomy. High-throughput sequencing showed that after abdominal hysterectomy, the abundance and diversity of the intestinal flora decreased. The abundance changes were mainly due to Proteobacteria, where their abundance increased. Conclusions :Trans-abdominal hysterectomy changes the intestinal flora of the body by lowering the level of estrogen in the body, which reduces the diversity and abundance of the intestinal flora .

scholarly journals Genomic Diversity in a Population of Spodoptera frugiperda Nucleopolyhedrovirus

2020 ◽  
Author(s):  
Tomás Masson ◽  
María Laura Fabre ◽  
Matias Luis Pidre ◽  
José María Niz ◽  
Marcelo Facundo Berretta ◽  
...  
Keyword(s):  
Spodoptera Frugiperda ◽  
High Throughput Sequencing ◽  
Biological Control Agent ◽  
Fall Armyworm ◽  
Control Agent ◽  
Genomic Diversity ◽  
List Type ◽  
Structural Variants ◽  
Single Nucleotide Variants ◽  
Coding Regions

AbstractSpodoptera frugiperda multiple nucleopolyhedrovirus (SfMNPV) represents a strong candidate to develop environmental-friendly pesticides against the fall armyworm (Spodoptera frugiperda), a widespread pest that poses a severe threat to different crops around the world. However, little is known regarding the genomic diversity present inside SfMNPV isolates and how it shapes the interactions between virus and host. Here, the genomic diversity present inside an isolate of SfMNPV was explored using high-throughput sequencing for the first time. We identified 704 intrahost single nucleotide variants, from which 184 are nonsynonymous mutations distributed among 82 different coding sequences. We detected several structural variants affecting SfMNPV genome, including two previously reported deletions inside the egt region. A comparative analysis between polymorphisms present in different SfMNPV isolates and our intraisolate diversity data suggests that coding regions with higher genetic diversity are associated with oral infectivity or unknown functions. In this context, through molecular evolution studies we provide evidence of diversifying selection acting on sf29, a putative collagenase which could contribute to the oral infectivity of SfMNPV. Overall, our results contribute to deepen our understanding of the coevolution between SfMNPV and the fall armyworm and will be useful to improve the applicability of this virus as a biological control agent.HighlightsWe characterized the genomic diversity within a population of SfMNPV.Coding regions with higher genetics diversity are associated with oral infectivity or unknown functions.Several structural variants contribute to the genomic diversity of SfMNPV.Sf29, a putative collagenase, shows signs of adaptive evolution.

scholarly journals Fall armyworm Spodoptera frugiperda : An invasive pest of Maize Omprakash Navik* and Jagadeesh Patil

2019 ◽  
Vol 34 (01) ◽  
Author(s):  
Omprakash Navik ◽  
Jagadeesh Patil
Keyword(s):  
Spodoptera Frugiperda ◽  
Tamil Nadu ◽  
Entomopathogenic Nematode ◽  
Fall Armyworm ◽  
Invasive Pest ◽  
Management Approach ◽  
Maize Crop ◽  
Larval Stages ◽  
Metarhizium Rileyi ◽  
Favorable Conditions

Fall armyworm, Spodoptera frugiperda (J.E. Smith) is an invasive pest of maize and first time reported in July 2018 from Karnataka, India. Presently, this pest has made havoc on maize crop in Karnataka, Tamil Nadu, Maharashtra, Telangana, Andhra Pradesh, Odisha, West Bengal and Chhattisgarh. This pest is an American origin and polyphagous in nature feeds on more than 80 plant species. It prefers to feed on maize crop, however in the absence of maize it feeds on sugarcane, sorghum, rice, cabbage, soybean, onion, tomato, potato and cotton. Life cycle of this pest completes within 32 to 46 days on maize under the favorable conditions. First two instars of S. frugiperda feed on the leaves and later instars moves inside the leaf whorl and starts feeding by leaving frass around the damaged area. For the management of this pest, an adaptation of integrated pest management approach is needed. Integrating, bioagents like egg parasistoids, Trichogramma pretiosum and Telenomus sp. and for larval stages by entompathogenic fungi Metarhizium anisopliae, Nomuraea rileyi (=Metarhizium rileyi, bacteria, (Bt) and entomopathogenic nematode, Heterorhabditis indica are useful options. However, need based application of insecticides like emamectin benzoate can be used for successful management of this pest.

Gene Expression Differences Between Developmental Stages of the Fall Armyworm (Spodoptera frugiperda)

2021 ◽  
Vol 40 (4) ◽  
pp. 580-588
Author(s):  
Lei Wang ◽  
Qiao Yang ◽  
Ruixiang Tang ◽  
Xu Liu ◽  
Zhenxin Fan ◽  
...  
Keyword(s):  
Gene Expression ◽  
Spodoptera Frugiperda ◽  
Developmental Stages ◽  
Fall Armyworm

scholarly journals Selection and Evaluation of Reference Genes for qRT-PCR in Spodoptera frugiperda (Lepidoptera: Noctuidae)

Insects ◽  
2021 ◽  
Vol 12 (10) ◽  
pp. 902
Author(s):  
Shipeng Han ◽  
Qiuju Qin ◽  
Da Wang ◽  
Yayuan Zhou ◽  
Yunzhuan He
Keyword(s):  
Spodoptera Frugiperda ◽  
Reference Genes ◽  
Developmental Stages ◽  
Fall Armyworm ◽  
Hormone Treatment ◽  
Temperature Treatment ◽  
Mating Status ◽  
Quantitative Expression ◽  
Qrt Pcr ◽  
Convenient Technique

As an accurate and convenient technique, the qRT-PCR is always used in the quantitative expression analysis of functional genes. Normalization of the data relies on stable reference genes. The fall armyworm Spodoptera frugiperda (J. E. Smith) is an important invasive and migratory pest that seriously threatens corn production around the world. In this paper, we selected 10 candidate reference genes (18S, AK, RPL10, RPS24, 28S, SOD, ATP, GAPDH, ACT, and a-TUB) and determined their expression levels under different conditions (different developmental stages, various tissues, mating status, hormones, diets, and temperatures). Subsequently, the stability of reference genes was evaluated by four algorithms (Delta Ct method, geNorm, NormFinder, BestKeeper). The optimal combination of reference genes for each treatment was obtained by geNorm. Finally, the comprehensive ranks were determined by the online tool RefFinder. Results showed that the most stable reference genes were SOD, RPL10, and RPS24 for developmental stages, α-TUB, RPL10, and ATP for different tissues, AK, RPL10, and 18S for mating status, 18S and AK under hormone treatment, 18S, RPL10, and SOD under diet treatment, RPL10, 18S, and RPS24 under temperature treatment. This study confirmed recent data on a few reference genes and provided an evaluation of a number of additional reference genes of S. frugiperda under various conditions.

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