scholarly journals LFPy – multimodal modeling of extracellular neuronal recordings in Python

2019 ◽  
Author(s):  
Espen Hagen ◽  
Solveig Næss ◽  
Torbjørn V. Ness ◽  
Gaute T. Einevoll
Keyword(s):  
Open Source ◽  
Neuronal Networks ◽  
Single Cells ◽  
Simulation Environment ◽  
Neuron Models ◽  
Open Source Tool ◽  
Brain Signals ◽  
Python Package ◽  
Extracellular Potentials ◽  
Neuron Simulation

1.AbstractLFPy is an open-source tool for calculating brain signals such as extracellular potentials and magnetic signals from simulated activity in multicompartment neuron models, ranging from single cells to large neuronal networks. The tool is provided as a Python package, and relies on the NEURON simulation environment.

scholarly journals Assessment of the regionalised demand response potential in Germany using an open source tool and dataset

2020 ◽  
pp. 100001
Author(s):  
Wilko Heitkoetter ◽  
Bruno U. Schyska ◽  
Danielle Schmidt ◽  
Wided Medjroubi ◽  
Thomas Vogt ◽  
...  
Keyword(s):  
Open Source ◽  
Demand Response ◽  
Open Source Tool

scholarly journals SynBiopython: an open-source software library for Synthetic Biology

2021 ◽  
Vol 6 (1) ◽  
Author(s):  
Jing Wui Yeoh ◽  
Neil Swainston ◽  
Peter Vegh ◽  
Valentin Zulkower ◽  
Pablo Carbonell ◽  
...  
Keyword(s):  
Synthetic Biology ◽  
Open Source ◽  
Open Source Software ◽  
Development Projects ◽  
Software Library ◽  
Current State ◽  
Starting Point ◽  
Common Problems ◽  
Data Tracking ◽  
Python Package

Abstract Advances in hardware automation in synthetic biology laboratories are not yet fully matched by those of their software counterparts. Such automated laboratories, now commonly called biofoundries, require software solutions that would help with many specialized tasks such as batch DNA design, sample and data tracking, and data analysis, among others. Typically, many of the challenges facing biofoundries are shared, yet there is frequent wheel-reinvention where many labs develop similar software solutions in parallel. In this article, we present the first attempt at creating a standardized, open-source Python package. A number of tools will be integrated and developed that we envisage will become the obvious starting point for software development projects within biofoundries globally. Specifically, we describe the current state of available software, present usage scenarios and case studies for common problems, and finally describe plans for future development. SynBiopython is publicly available at the following address: http://synbiopython.org.

An open-source tool for visualization of climate mitigation scenarios: Mipplot

2021 ◽  
Vol 139 ◽  
pp. 105001 ◽  
Author(s):  
Yiyi Ju ◽  
Masahiro Sugiyama ◽  
Diego Silva Herran ◽  
Jiayang Wang ◽  
Akimitsu Inoue
Keyword(s):  
Open Source ◽  
Climate Mitigation ◽  
Open Source Tool ◽  
Mitigation Scenarios

MotilityJ: An Open-Source Tool for the Classification and Segmentation of Bacteria on Motility Images

2021 ◽  
pp. 104673
Author(s):  
Ángela Casado-García ◽  
Gabriela Chichón ◽  
César Domínguez ◽  
Manuel García-Domínguez ◽  
Jónathan Heras ◽  
...  
Keyword(s):  
Open Source ◽  
Open Source Tool

scholarly journals QuakeMigrate: a Modular, Open-Source Python Package for Automatic Earthquake Detection and Location

2021 ◽  
Author(s):  
Tom Winder ◽  
Conor Bacon ◽  
Jonathan Smith ◽  
Thomas Hudson ◽  
Tim Greenfield ◽  
...  
Keyword(s):  
Open Source ◽  
Earthquake Detection ◽  
Python Package

Retina: An open-source tool for flexible analysis of RTC traffic

2021 ◽  
pp. 108637
Author(s):  
Gianluca Perna ◽  
Dena Markudova ◽  
Martino Trevisan ◽  
Paolo Garza ◽  
Michela Meo ◽  
...  
Keyword(s):  
Open Source ◽  
Open Source Tool
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