scholarly journals Two Y chromosome-encoded genes determine sex in kiwifruit

2019 ◽  
Author(s):  
Takashi Akagi ◽  
Sarah M. Pilkington ◽  
Erika Varkonyi-Gasic ◽  
Isabelle M. Henry ◽  
Shigeo S. Sugano ◽  
...  
Keyword(s):  
Y Chromosome ◽  
Theoretical Models ◽  
Flowering Plant ◽  
Dioecious Species ◽  
Determination System ◽  
Angiosperm Species ◽  
Sex Determination System ◽  
Male Specific ◽  
Evolution Of Dioecy ◽  
Insight Into

ABSTRACTDioecy, the presence of male and female individuals, has evolved independently in multiple flowering plant lineages. Although theoretical models for the evolution of dioecy, such as the “two-mutation” model, are well established, little is known about the specific genes determining sex and their evolutionary history. Kiwifruit, a major tree crop consumed worldwide, is a dioecious species. In kiwifruit, we had previously identified a Y-encoded sex-determinant candidate gene acting as the suppressor of feminization (SuF), named Shy Girl (SyGI). Here, we identified a second Y-encoded sex-determinant that we named Friendly boy (FrBy), which exhibits strong expression in tapetal cells. Gene-editing and complementation analyses in Arabidopsis thaliana and Nicotiana tabacum indicated that FrBy acts for the maintenance of male (M) functions, independently of SyGI, and that these functions are conserved across angiosperm species. We further characterized the genomic architecture of the small (< 1 Mb) male specific region of the Y-chromosome (MSY), which harbors only two genes significantly expressed in developing gynoecia and androecia, respectively: SyGI and FrBy. Resequencing of the genome of a natural hermaphrodite kiwifruit revealed that this individual is genetically male but carries deletion(s) of parts of the Y-chromosome, including SyGI. Additionally, expression of FrBy in female kiwifruit resulted in hermaphrodite plants. These results clearly indicate that Y-encoded SyGI and FrBy act independently as the SuF and M factors in kiwifruit, respectively, and provide insight into the evolutionary path leading to a two-factor sex determination system but also a new breeding approach for dioecious species.

scholarly journals The Snakeskin Gourami (Trichopodus pectoralis) Tends to Exhibit XX/XY Sex Determination

Fishes ◽  
2021 ◽  
Vol 6 (4) ◽  
pp. 43
Author(s):  
Thitipong Panthum ◽  
Nararat Laopichienpong ◽  
Ekaphan Kraichak ◽  
Worapong Singchat ◽  
Dung Ho My Nguyen ◽  
...  
Keyword(s):  
Sex Differences ◽  
Sex Determination ◽  
Y Chromosome ◽  
Cytogenetic Analysis ◽  
Genotyping By Sequencing ◽  
Sexually Dimorphic ◽  
Determination System ◽  
Sex Determination System ◽  
Male Specific ◽  
Determination Mechanism

The snakeskin gourami (Trichopodus pectoralis) has a high meat yield and is one of the top five aquaculture freshwater fishes in Thailand. The species is not externally sexually dimorphic, and its sex determination system is unknown. Understanding the sex determination system of this species will contribute to its full-scale commercialization. In this study, a cytogenetic analysis did not reveal any between-sex differences in chromosomal patterns. However, we used genotyping-by-sequencing to identify 4 male-linked loci and 1 female-linked locus, indicating that the snakeskin gourami tends to exhibit an XX/XY sex determination system. However, we did not find any male-specific loci after filtering the loci for a ratio of 100:0 ratio of males:females. This suggests that the putative Y chromosome is young and that the sex determination region is cryptic. This approach provides solid information that can help identify the sex determination mechanism and potential sex determination regions in the snakeskin gourami, allowing further investigation of genetic improvements in the species.

scholarly journals Heterochiasmy facilitated the establishment of gsdf as a novel sex determining gene in Atlantic halibut

2020 ◽  
Author(s):  
Rolf Brudvik Edvardsen ◽  
Ola Wallerman ◽  
Tomasz Furmanek ◽  
Lene Kleppe ◽  
Patric Jern ◽  
...  
Keyword(s):  
Sex Determination ◽  
Y Chromosome ◽  
Meiotic Recombination ◽  
Sequence Divergence ◽  
Atlantic Halibut ◽  
Specific Expression ◽  
Repeat Class ◽  
Determination System ◽  
Sex Determination System ◽  
Male Specific

Atlantic Halibut (Hippoglossus hippoglossus) has a X/Y genetic sex determination system, but the sex determining factor is not known. We produced a high-quality genome assembly and identified parts of chromosome 13 as the Y chromosome due to sequence divergence between sexes and segregation of sex genotypes in pedigrees. Linkage analysis revealed that all chromosomes exhibit heterochiasmy, i.e. male- and female restricted meiotic recombination intervals (MRR/FRR). We show that FRR/MRR intervals differ in nucleotide diversity and repeat class content and that this is true also for other Pleuronectidae species. We further show that remnants of a Gypsy-like transposable element insertion on chr13 promotes early male specific expression of gonadal somatic cell derived factor (gsdf). Less than 4 MYA, this male-determining element evolved on an autosomal FRR segment featuring pre-existing male meiotic recombination barriers, thereby creating a Y chromosome. We propose that heterochiasmy may facilitate the evolution of genetic sex determination systems.

SEX AND SUPERNUMERARY CHROMOSOMES IN THE DIOECIOUS GRASS SOHNSIA FILIFOLIA

1972 ◽  
Vol 14 (1) ◽  
pp. 175-180 ◽  
Author(s):  
D. N. Singh
Keyword(s):  
Sex Determination ◽  
Y Chromosome ◽  
Supernumerary Chromosome ◽  
The Other ◽  
Male Plant ◽  
Diploid Male ◽  
Male And Female ◽  
Supernumerary Chromosomes ◽  
Determination System ◽  
Sex Determination System

A dioecious grass Sohnsia filifolia (Fourn.) Airy Shaw (Syn. Calamochloa filifolia Fourn.) from Mexico has been found to have 2n = 20 chromosomes in both male and female plants. The staminate plants have one chromosome much longer than the other chromosomes of the complement. One pistillate plant was found to have 30 chromosomes, among which the largest chromosome is quite similar to the largest component of the diploid male plant. The longest chromosome has been designated as the Y chromosome. An XY-mechanism of the Drosophilia type has been suggested for the sex determination system in this species. One small supernumerary chromosome was observed in the microsporocytes of some male plants, but was absent in roots.

scholarly journals Pleiotropic effects of sex-determining genes in the evolution of dioecy in two plant species

2019 ◽  
Vol 286 (1913) ◽  
pp. 20191805 ◽  
Author(s):  
Takashi Akagi ◽  
Deborah Charlesworth
Keyword(s):  
Theoretical Models ◽  
Ancestral State ◽  
Relative Importance ◽  
Sexual Antagonism ◽  
Dioecious Plant ◽  
Dioecious Species ◽  
Dioecious Plants ◽  
Sexual Dimorphisms ◽  
Evolution Of Dioecy ◽  
Plant Sex

One reason for studying sex chromosomes of flowering plants is that they have often evolved separate sexes recently, and the genomes of dioecious species may not yet have evolved adaptations to their changes from the ancestral state. An unstudied question concerns the relative importance of such adaptation, versus the effects of the mutations that led to separate sexes in the first place. Theoretical models for such an evolutionary change make the prediction that the mutations that created males must have sexually antagonistic effects, not only abolishing female functions, but also increasing male functions relative to the ancestral functional hermaphrodites. It is important to test this critical assumption. Moreover, the involvement of sexual antagonism also implies that plant sex-determining genes may directly cause some of the sexual dimorphisms observed in dioecious plants. Sex-determining genes are starting to be uncovered in plants, including species in the genera Diospyros and Actinidia (families Ebenaceae and Actinidiaceae, respectively). Here, we describe transgenic experiments in which the effects of the very different male-determining genes of these two dioecious species were studied in a non-dioecious plant, Nicotiana tabacum . The results indeed support the critical assumption outlined above.

scholarly journals Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral ( Corallium rubrum )

2017 ◽  
Vol 4 (3) ◽  
pp. 160880 ◽  
Author(s):  
M. Pratlong ◽  
A. Haguenauer ◽  
S. Chenesseau ◽  
K.  Brener ◽  
G. Mitta ◽  
...  
Keyword(s):  
Sex Determination ◽  
Strong Association ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Evolutionary Forces ◽  
Corallium Rubrum ◽  
Red Coral ◽  
Determination System ◽  
Sex Determination System ◽  
Male Specific

Sexual reproduction is widespread among eukaryotes, and the sex-determining processes vary greatly among species. While genetic sex determination (GSD) has been intensively described in bilaterian species, no example has yet been recorded among non-bilaterians. However, the quasi-ubiquitous repartition of GSD among multicellular species suggests that similar evolutionary forces can promote this system, and that these forces could occur also in non-bilaterians. Studying sex determination across the range of Metazoan diversity is indeed important to understand better the evolution of this mechanism and its lability. We tested the existence of sex-linked genes in the gonochoric red coral ( Corallium rubrum , Cnidaria) using restriction site-associated DNA sequencing. We analysed 27 461 single nucleotide polymorphisms (SNPs) in 354 individuals from 12 populations including 53 that were morphologically sexed. We found a strong association between the allele frequencies of 472 SNPs and the sex of individuals, suggesting an XX/XY sex-determination system. This result was confirmed by the identification of 435 male-specific loci. An independent test confirmed that the amplification of these loci enabled us to identify males with absolute certainty. This is the first demonstration of a GSD system among non-bilaterian species and a new example of its convergence in multicellular eukaryotes.

Y chromosome specific markers and the evolution of dioecy in the genus Silene

Genome ◽  
1998 ◽  
Vol 41 (2) ◽  
pp. 141-147 ◽  
Author(s):  
Y Hi Zhang ◽  
Veronica S Stilio ◽  
Farah Rehman ◽  
Amy Avery ◽  
David Mulcahy ◽  
...  
Keyword(s):  
Y Chromosome ◽  
Sex Chromosomes ◽  
Silene Latifolia ◽  
Dioecious Species ◽  
Sequence Characterized Amplified Region ◽  
Y Chromosomes ◽  
Heteromorphic Sex Chromosomes ◽  
Males And Females ◽  
Genus Silene ◽  
Evolution Of Dioecy

Sex determination in plants has been most thoroughly investigated in Silene latifolia, a dioecious species possessing heteromorphic sex chromosomes. We have identified several new Y chromosome linked RAPD markers and converted these to more reliable sequence characterized amplified region (SCAR) markers by cloning the RAPD fragments and developing longer primers. Of the primer pairs for seven SCARs, five amplify a single, unique fragment from the DNA of male S. latifolia. Two sets of primers also amplify additional fragments common to males and females. Homology between the X and Y chromosomes is sufficient to allow the amplification of fragments from females under less stringent PCR conditions. Five of the SCARs also distinguish between the sexes of closely related dioecious taxa of the section Elisanthe, but not between the sexes of distantly related dioecious species. These markers will be useful for continued investigations into the evolution of sex, phylogenetic relationships among taxa, and population dynamics of sex ratios in the genus Silene.Key words: Melandrium, RAPDs, sex chromosomes, SCARs.

scholarly journals Sex-determination and sex chromosomes are shared across the radiation of dioecious Nepenthes pitcher plants

2017 ◽  
Author(s):  
Mathias Scharmann ◽  
T. Ulmar Grafe ◽  
Faizah Metali ◽  
Alex Widmer
Keyword(s):  
Sex Determination ◽  
Sex Chromosomes ◽  
High Throughput Sequencing ◽  
Silene Latifolia ◽  
Wild Populations ◽  
Sequencing Data ◽  
Pitcher Plants ◽  
Determination System ◽  
Sex Determination System ◽  
Male Specific

AbstractPlants with separate sexes (dioecy) represent a minority but dioecy has evolved multiple times independently in plants. Our understanding of sex determination systems in plants and of the ecological factors and molecular changes associated with the evolution of dioecy remain limited. Here, we study the sex-determination system in dioecious plants that lack heteromorphic sex chromosomes and are not amenable to controlled breeding: Nepenthes pitcher plants. We genotyped wild populations of flowering males and females of three Nepenthes taxa using ddRAD-seq, and sequenced a male inflorescence transcriptome. We developed a novel statistical tool (privacy rarefaction) to distinguish true sex-specificity from stochastic noise in high-throughput sequencing data. Our results support XY-systems in all three Nepenthes taxa and in Silene latifolia which was used as a positive control for its known XY-system. The male-specific region of the Y chromosome showed little conservation among the three Nepenthes taxa, except for the essential pollen development gene DYT1 which was also male-specific in additional taxa. Hence, this homomorphic XY sex-determination system likely has a unique origin older than the crown of the genus Nepenthes at c. 17.7 My. In addition to the characterisation of the previously unknown sex chromosomes of Nepenthes, our work contributes an innovative, highly sensitive statistical method to efficiently detect sex-specific genomic regions in wild populations in general.

scholarly journals Chromosomal variation, macroevolution and possible parapatric speciation in Mepraia spinolai (Porter) (Hemiptera: Reduviidae)

1998 ◽  
Vol 21 (2) ◽  
pp. 179-184 ◽  
Author(s):  
Daniel Frias ◽  
Juan Atria
Keyword(s):  
Y Chromosome ◽  
Morphological Changes ◽  
Metropolitan Region ◽  
Southern Population ◽  
Y Chromosomes ◽  
Determination System ◽  
Sex Determination System ◽  
Parapatric Speciation ◽  
Or Genes ◽  
Experimental Crosses

Mepraia spinolai is an endemic species in Chile that lives in wild and domestic habitats. It is the only species of the Reduviidae family that shows alate polymorphism; females are always wingless, but males can be found with and without wings. The M. spinolai karyotype consists of 10 pairs of autosomes and a complex sex determination system. Males from the northernmost regions I and II (latitude 18°-26° South) are always winged (braquipterous) and are X1X2Y, with a large Y chromosome. From region III to the metropolitan region (latitude 26°-33° South), males may be either winged or wingless but appear to be polymorphic for a small neo-Y chromosome, which may have originated by fracture of the large holocentric Y chromosome found in populations from farther north. Experimental crosses suggest that the genes for wings are linked in the Y chromosome and also that there are two cytologically indistinguishable types of neo-Y chromosomes. One form (Y1) bears a gene or genes for wings while the other (Y2) lacks such genes. Males that are X1X2Y1, X1X2Y1Y1 and X1X2Y1Y2 are winged, while the absence of Y1 (X1X2Y2 and X1X2Y2Y2 ) results in a wingless male. These chromosomes and morphological changes are correlated with a shift of the southern population into more arid habitats of the interior in the metropolitan region and region III.

scholarly journals Sex-Biased Gene Expression and Isoform Profile of Brine Shrimp Artemia franciscana by Transcriptome Analysis

Animals ◽  
2021 ◽  
Vol 11 (9) ◽  
pp. 2630
Author(s):  
Euna Jo ◽  
Seung-Jae Lee ◽  
Eunkyung Choi ◽  
Jinmu Kim ◽  
Jun-Hyuck Lee ◽  
...  
Keyword(s):  
Sex Determination ◽  
Brine Shrimp ◽  
Model Organism ◽  
Enrichment Analysis ◽  
Go Enrichment ◽  
Determination System ◽  
Sex Determination System ◽  
Female Specific ◽  
Male Specific ◽  
Go Enrichment Analysis

The brine shrimp Artemia has a ZW sex determination system with ZW chromosomes in females and ZZ chromosomes in males. Artemia has been considered a promising model organism for ZW sex-determining systems, but the genes involved in sex determination and differentiation of Artemia have not yet been identified. Here, we conducted transcriptome sequencing of female and male A. franciscana using PacBio Iso-Seq and Illumina RNA-Seq techniques to identify candidate sex determination genes. Among the 42,566 transcripts obtained from Iso-Seq, 23,514 were analyzed. Of these, 2065 (8.8%) were female specific, 2513 (10.7%) were male specific, and 18,936 (80.5%) were co-expressed in females and males. Based on GO enrichment analysis and expression values, we found 10 female-biased and 29 male-biased expressed genes, including DMRT1 and Sad genes showing male-biased expression. Our results showed that DMRT1 has three isoforms with five exons, while Sad has seven isoforms with 2–11 exons. The Sad gene is involved in ecdysteroid signaling related to molting and metamorphosis in arthropods. Further studies on ecdysteroid biosynthetic genes are needed to improve our understanding of Artemia sex determination. This study will provide a valuable resource for sex determination and differentiation studies on Artemia and other crustaceans with ZW systems.

Sign in / Sign up

Export Citation Format

Share Document