scholarly journals Online parallel accumulation − serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

2018 ◽  
Author(s):  
Florian Meier ◽  
Andreas-David Brunner ◽  
Scarlet Koch ◽  
Heiner Koch ◽  
Markus Lubeck ◽  
...  
Keyword(s):  
Cross Sections ◽  
Ion Mobility ◽  
Large Scale ◽  
High Efficiency ◽  
Low Voltage ◽  
Shotgun Proteomics ◽  
Trapped Ion ◽  
Operating Modes ◽  
Third Dimension ◽  
Mobility Device

ABSTRACTIn bottom-up proteomics, peptides are separated by liquid chromatography with elution peak widths in the range of seconds, while mass spectra are acquired in about 100 microseconds with time-of-fight (TOF) instruments. This allows adding ion mobility as a third dimension of separation. Among several formats, trapped ion mobility spectrometry (TIMS) is attractive due to its small size, low voltage requirements and high efficiency of ion utilization. We have recently demonstrated a scan mode termed parallel accumulation – serial fragmentation (PASEF), which multiplies the sequencing speed without any loss in sensitivity (Meier et al., PMID: 26538118). Here we introduce the timsTOF Pro instrument, which optimally implements online PASEF. It features an orthogonal ion path into the ion mobility device, limiting the amount of debris entering the instrument and making it very robust in daily operation. We investigate different precursor selection schemes for shotgun proteomics to optimally allocate in excess of 100 fragmentation events per second. More than 800,000 fragmentation spectra in standard 120 min LC runs are easily achievable, which can be used for near exhaustive precursor selection in complex mixtures or re-sequencing weak precursors. MaxQuant identified more than 6,400 proteins in single run HeLa analyses without matching to a library, and with high quantitative reproducibility (R > 0.97). Online PASEF achieves a remarkable sensitivity with more than 2,900 proteins identified in 30 min runs of only 10 ng HeLa digest. We also show that highly reproducible collisional cross sections can be acquired on a large scale (R > 0.99). PASEF on the timsTOF Pro is a valuable addition to the technological toolbox in proteomics, with a number of unique operating modes that are only beginning to be explored.

scholarly journals Parallel Accumulation–Serial Fragmentation (PASEF): Multiplying Sequencing Speed and Sensitivity by Synchronized Scans in a Trapped Ion Mobility Device

2015 ◽  
Vol 14 (12) ◽  
pp. 5378-5387 ◽  
Author(s):  
Florian Meier ◽  
Scarlet Beck ◽  
Niklas Grassl ◽  
Markus Lubeck ◽  
Melvin A. Park ◽  
...  
Keyword(s):  
Ion Mobility ◽  
Trapped Ion ◽  
Mobility Device

scholarly journals AlphaTims: Indexing trapped ion mobility spectrometry - time of flight data for fast and easy accession and visualization

2021 ◽  
Author(s):  
Sander Willems ◽  
Eugenia Voytik ◽  
Patricia Skowronek ◽  
Maximilian T Strauss ◽  
Matthias Mann
Keyword(s):  
Mass Spectrometry ◽  
Open Source ◽  
Ion Mobility Spectrometry ◽  
Ion Mobility ◽  
Large Scale ◽  
High Resolution Mass Spectrometry ◽  
Time Of Flight ◽  
Arrival Times ◽  
Trapped Ion ◽  
Trapped Ion Mobility Spectrometry

High resolution mass spectrometry-based proteomics generates large amounts of data, even in the standard liquid chromatography (LC) - tandem mass spectrometry configuration. Adding an ion mobility dimension vastly increases the acquired data volume, challenging both analytical processing pipelines and especially data exploration by scientists. This has necessitated data aggregation, effectively discarding much of the information present in these rich data sets. Taking trapped ion mobility spectrometry (TIMS) on a quadrupole time-of-flight platform (Q-TOF) as an example, we developed an efficient indexing scheme that represents all data points as detector arrival times on scales of minutes (LC), milliseconds (TIMS) and microseconds (TOF). In our open source AlphaTims package, data are indexed, accessed and visualized by a combination of tools of the scientific Python ecosystem. We interpret unprocessed data as a sparse 4D matrix and use just-in-time compilation to machine code with Numba, accelerating our computational procedures by several orders of magnitude while keeping to familiar indexing and slicing notations. For samples with more than six billion detector events, a modern laptop can load and index raw data in about a minute. Loading is even faster when AlphaTims has already saved indexed data in a HDF5 file, a portable scientific standard used in extremely large-scale data acquisition. Subsequently, data accession along any dimension and interactive visualization happen in milliseconds. We have found AlphaTims to be a key enabling tool to explore high dimensional LC-TIMS-QTOF data and have made it freely available as an open-source Python package with a stand-alone graphical user interface at https://github.com/MannLabs/alphatims or as part of the AlphaPept ecosystem.

scholarly journals Design of an Intelligent Purification and Disinfection Apparatus for Air Conditioning Units

2021 ◽  
Vol 2087 (1) ◽  
pp. 012062
Author(s):  
Yitong Duan ◽  
Kun He ◽  
Xinyi Xie ◽  
Jingwen Zou ◽  
Huiyu Zhao
Keyword(s):  
Air Conditioning ◽  
Prevention And Control ◽  
Large Scale ◽  
High Efficiency ◽  
Modular Design ◽  
Virus Detection ◽  
Positive Role ◽  
Operating Modes ◽  
Epidemic Period ◽  
And Control

Abstract With the sudden outbreak and rapid spread of COVID-19, global economic development and social stability have been seriously affected. The virus mainly spreads infection among people on a large scale through the air. People are gradually focusing on how to use HVAC system, so that it can play a more efficient and positive role in epidemic prevention and control. Consequently, we designed an intelligent purification and disinfection apparatus for air-conditioning units. The apparatus integrates rapid virus detection and high-efficiency disinfection functions. It uses a modular design and different operating modes for different levels of epidemic periods. This apparatus is not only suitable for daily life, but also can meet the prevention and control requirements during the epidemic period, which takes the economy, energy saving, and environmental protection into account.

scholarly journals A high efficiency non-inverting multi device buck-boost DC-DC converter with reduced ripple current and wide bandwidth for fuel cell low voltage applications

2018 ◽  
Vol 15 (2) ◽  
pp. 165-186
Author(s):  
Naik Venkatesh ◽  
Paulson Samuel
Keyword(s):  
Steady State ◽  
Fuel Cell ◽  
Output Voltage ◽  
High Efficiency ◽  
Low Voltage ◽  
Input Voltage ◽  
Boost Converter ◽  
Prototype Model ◽  
Voltage Range ◽  
Operating Modes

The voltage produced by the fuel cell (FC) device is unregulated and varies from 0.4 V to 0.8 V on full load to no-load respectively. When these devices are used in low voltage applications and output voltage lies between higher and lower values of input voltage range, it is required to connect a DCDC buck-boost converter to get a fixed output voltage. In this paper, a new noninverting multi device buck boost converter (MDBBC) is proposed, in which the multi device buck and boost converters are connected in cascade and operate individually either in buck or boost operating modes. The paper also includes the steady state analysis of MDDBC based on the state space averaging technique. A prototype model of proposed converter compatible with FCS-1000 Horizon FC model with rating of 270 W, 36 V is designed and developed. The proposed converter is experimentally validated with the results obtained from the prototype model, and results show the superiority of the converter with higher efficiency and lesser ripple current observed under steady state operation of the converter.

Spatial Metabolomics of the Human Kidney Using MALDI Trapped Ion Mobility Imaging Mass Spectrometry

2020 ◽  
Author(s):  
Elizabeth Neumann ◽  
Lukasz Migas ◽  
Jamie L. Allen ◽  
Richard Caprioli ◽  
Raf Van de Plas ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Ion Mobility ◽  
Imaging Mass Spectrometry ◽  
Structural Complexity ◽  
Human Kidney ◽  
Resolving Power ◽  
Mobility Separation ◽  
Trapped Ion ◽  
Mobility Data ◽  
Ion Mobility Separation

<div> <div> <p>Small metabolites are essential for normal and diseased biological function but are difficult to study because of their inherent structural complexity. MALDI imaging mass spectrometry (IMS) of small metabolites is particularly challenging as MALDI matrix clusters are often isobaric with metabolite ions, requiring high resolving power instrumentation or derivatization to circumvent this issue. An alternative to this is to perform ion mobility separation before ion detection, enabling the visualization of metabolites without the interference of matrix ions. Here, we use MALDI timsTOF IMS to image small metabolites at high spatial resolution within the human kidney. Through this, we have found metabolites, such as arginic acid, acetylcarnitine, and choline that localize to the cortex, medulla, and renal pelvis, respectively. We have also demonstrated that trapped ion mobility spectrometry (TIMS) can resolve matrix peaks from metabolite signal and separate both isobaric and isomeric metabolites with different localizations within the kidney. The added ion mobility data dimension dramatically increased the peak capacity for molecular imaging experiments. Future work will involve further exploring the small metabolite profiles of human kidneys as a function of age, gender, and ethnicity.</p></div></div>

The Potential of Photoelectrochemical Carbon Sinks

2018 ◽  
Author(s):  
Matthias May ◽  
Kira Rehfeld
Keyword(s):  
Global Warming ◽  
High Temperature ◽  
Greenhouse Gas ◽  
Large Scale ◽  
High Efficiency ◽  
Carbon Sink ◽  
Solar Fuels ◽  
Negative Emissions ◽  
Viable Approach ◽  
Low Sensitivity

Greenhouse gas emissions must be cut to limit global warming to 1.5-2C above preindustrial levels. Yet the rate of decarbonisation is currently too low to achieve this. Policy-relevant scenarios therefore rely on the permanent removal of CO<sub>2</sub> from the atmosphere. However, none of the envisaged technologies has demonstrated scalability to the decarbonization targets for the year 2050. In this analysis, we show that artificial photosynthesis for CO<sub>2</sub> reduction may deliver an efficient large-scale carbon sink. This technology is mainly developed towards solar fuels and its potential for negative emissions has been largely overlooked. With high efficiency and low sensitivity to high temperature and illumination conditions, it could, if developed towards a mature technology, present a viable approach to fill the gap in the negative emissions budget.<br>

The Potential of Photoelectrochemical Carbon Sinks

2018 ◽  
Author(s):  
Matthias May ◽  
Kira Rehfeld
Keyword(s):  
Global Warming ◽  
High Temperature ◽  
Greenhouse Gas ◽  
Large Scale ◽  
High Efficiency ◽  
Carbon Sink ◽  
Solar Fuels ◽  
Negative Emissions ◽  
Viable Approach ◽  
Low Sensitivity

Greenhouse gas emissions must be cut to limit global warming to 1.5-2C above preindustrial levels. Yet the rate of decarbonisation is currently too low to achieve this. Policy-relevant scenarios therefore rely on the permanent removal of CO<sub>2</sub> from the atmosphere. However, none of the envisaged technologies has demonstrated scalability to the decarbonization targets for the year 2050. In this analysis, we show that artificial photosynthesis for CO<sub>2</sub> reduction may deliver an efficient large-scale carbon sink. This technology is mainly developed towards solar fuels and its potential for negative emissions has been largely overlooked. With high efficiency and low sensitivity to high temperature and illumination conditions, it could, if developed towards a mature technology, present a viable approach to fill the gap in the negative emissions budget.<br>

Peculiarities of the phytosanitary state of pome fruits in industrial horticulture

2020 ◽  
Vol 60 (1) ◽  
pp. 159-168
Author(s):  
V. V. Antonenko ◽  
A. V. Zubkov ◽  
S. N. Kruchina
Keyword(s):  
Mechanism Of Action ◽  
Large Scale ◽  
High Efficiency ◽  
Fruit Trees ◽  
Fruit Crops ◽  
Planting Material ◽  
Relative Safety ◽  
Pome Fruits ◽  
Weed Plants ◽  
Spread Of Infection

Data were obtained on the basis of the results of research carried out on the territory of the educational and experimental farm of the Timiryazev State Agrarian University, in Moscow during 2018-2019. As a result of the surveys, the most dangerous diseases and pests of pome crops on the territory of this farm were established. The most resistant apple and pear varieties to major diseases have been identified. Peculiarities of development of alternariosis on pear are described, the harmfulness of the disease on pear and apple seedlings is noted. A possible role in the transfer of alternariosis infection from garden-protective plantations and weed vegetation to fruit trees was noted. A possible role has been established in the transport of septoriosis, powdery dew infection from dicotyledonous weeds plants. The peculiarities of the spread of infection under the influence of wind direction are noted. The results and peculiarities of the application of various methods of scaring birds in the orchard are presented. As a result of route surveys the most harmful weed plants have been identified. The possibility of using herbicides of different mechanism of action in fruit gardens for weed control has been studied. High efficiency and relative safety of application of herbicides of contact action in nursery fields, operational orchards and for control of piglets on fruit trees are shown. Recommendations are given for the use of soil and systemic herbicides of soil in seedlings beds, the first and second fields of the nursery, as well as in the process of production of large-scale planting material and operational orchards of fruit crops. The safety of the herbicides in question is established when used in accordance with the recommended methods of use.

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