scholarly journals Diversification, sympatry, and the emergence of mega-diverse tropical assemblages

2017 ◽  
Author(s):  
Jacob B. Socolar ◽  
Alexander C. Lees
Keyword(s):  
Species Richness ◽  
Species Coexistence ◽  
Sympatric Species ◽  
Latitudinal Gradients ◽  
Evolutionary Patterns ◽  
Multiple Timescales ◽  
Diversification Rates ◽  
Evolutionary Diversification ◽  
Extinction Rates ◽  
High Diversity

ABSTRACTGeographic gradients in species richness, including latitudinal gradients, can arise from geographic variation in any of three mechanisms: the geologic age of habitats, net rates of evolutionary diversification, or rates of sympatry among diversifying lineages. Here we show that variation in rates of sympatry is a dominant force structuring geographic richness gradients in birds. Species-rich sites contain disproportionately high numbers of recently diverged sympatric species but contain lineages with slower-than-average diversification rates. The positive sympatry-diversity relationship consistently overwhelms the negative diversification-diversity relationship, particularly among high-diversity sites (>250 species). These patterns repeat across biomes and continents with striking regularity, and remain consistent across multiple timescales, including the recent evolutionary past. Biogeographic and evolutionary patterns in birds are consistent with a role for ecological conditions in promoting species coexistence, which allows sister species to co-occur and potentially lowers extinction rates.

scholarly journals Ecological Specialization and Diversification in Birds

2020 ◽  
Author(s):  
Nicholas M. A. Crouch ◽  
Robert E. Ricklefs ◽  
Boris Igić
Keyword(s):  
Species Richness ◽  
Ecological Specialization ◽  
Diversification Rates ◽  
Speciation Rate ◽  
Extinction Rates ◽  
Allopatric Species ◽  
Species Formation ◽  
Geographic Distributions ◽  
Local Ecology ◽  
Lineage Diversification

AbstractEcological specialization is widely thought to influence patterns of species richness by affecting rates at which species multiply and perish. Quantifying specialization is challenging, and using only one or a small number of ecological axes could bias estimates of overall specialization. Here, we calculate an index of specialization, based on seven measured traits, and estimate its effect on speciation and extinction rates in a large clade of birds. We find that speciation rate is independent of specialization, suggesting independence of local ecology and the geographic distributions of populations that promote allopatric species formation. Although some analyses suggest that more specialized species have higher extinction rates, leading to negative net diversification, this relationship is not consistently identified across our analyses. Our results suggest that specialization may drive diversification dynamics only on local scales or in specific clades, but is not generally responsible for macroevolutionary disparity in lineage diversification rates.

scholarly journals Settling down of seasonal migrants promotes bird diversification

2014 ◽  
Vol 281 (1784) ◽  
pp. 20140473 ◽  
Author(s):  
Jonathan Rolland ◽  
Frédéric Jiguet ◽  
Knud Andreas Jønsson ◽  
Fabien L. Condamine ◽  
Hélène Morlon
Keyword(s):  
Species Richness ◽  
Sedentary Behaviour ◽  
Evolutionary History ◽  
Seasonal Migration ◽  
Migratory Behaviour ◽  
Migratory Species ◽  
Diversification Rates ◽  
Extinction Rates ◽  
History Of ◽  
Daughter Species

How seasonal migration originated and impacted diversification in birds remains largely unknown. Although migratory behaviour is likely to affect bird diversification, previous studies have not detected any effect. Here, we infer ancestral migratory behaviour and the effect of seasonal migration on speciation and extinction dynamics using a complete bird tree of life. Our analyses infer that sedentary behaviour is ancestral, and that migratory behaviour evolved independently multiple times during the evolutionary history of birds. Speciation of a sedentary species into two sedentary daughter species is more frequent than speciation of a migratory species into two migratory daughter species. However, migratory species often diversify by generating a sedentary daughter species in addition to the ancestral migratory one. This leads to an overall higher migratory speciation rate. Migratory species also experience lower extinction rates. Hence, although migratory species represent a minority (18.5%) of all extant birds, they have a higher net diversification rate than sedentary species. These results suggest that the evolution of seasonal migration in birds has facilitated diversification through the divergence of migratory subpopulations that become sedentary, and illustrate asymmetrical diversification as a mechanism by which diversification rates are decoupled from species richness.

scholarly journals Polyploidy and elevation contribute to opposing latitudinal gradients in diversification and species richness in lady ferns (Athyriaceae)

2018 ◽  
Author(s):  
Ran Wei ◽  
Richard H. Ree ◽  
Michael A. Sundue ◽  
Xian-Chun Zhang
Keyword(s):  
Species Richness ◽  
Latitudinal Gradients ◽  
State Change ◽  
Diversification Rates ◽  
Rate Shift ◽  
Polymorphic Species ◽  
The Tropics ◽  
Novel Model

In ferns, the temperate-tropical sister clades Athyrium and Diplazium present an opportunity to study a latitudinal contrast in diversification dynamics. We generated a taxonomically expanded molecular chronogram and used macroevolutionary models to analyze how diversification rates have changed through time, across lineages, and in concert with changes in elevation and ploidy. We tested a novel model of cladogenetic state-change in which polyploidy can arise as an infraspecific polymorphism, with diversification parameters distinct from those of pure diploids and polyploids. Both Athyrium and Diplazium accelerated their diversification near the Oligocene-Miocene transition. In Diplazium, the rate shift is older, with subsequent net diversification somewhat slower and suggestive of diversity-dependence. In Athyrium, diversification is faster and associated with higher elevations. In both clades, polyploids have the highest rate of net accumulation but lowest (negative) net diversification, while the converse is true for polymorphic species; diploids have low rates of both net accumulation and diversification. Diversification in Athyrium may have responded to ecological opportunities in expanding temperate habitats during the Neogene, especially in mountains, while the pattern in Diplazium suggests saturation in the tropics. Neopolyploids are generated rapidly, primarily through accelerated cladogenesis in polymorphic species, but are evolutionary dead ends.

scholarly journals Ecological and biogeographic drivers of biodiversity cannot be resolved using clade age-richness data

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Daniel L. Rabosky ◽  
Roger B. J. Benson
Keyword(s):  
Species Richness ◽  
Comparative Studies ◽  
Degrees Of Freedom ◽  
Predictive Ability ◽  
Inference Procedure ◽  
Diversification Rates ◽  
Evolutionary Diversification ◽  
Point Estimates ◽  
Extant Species ◽  
Single Clade

AbstractEstimates of evolutionary diversification rates – speciation and extinction – have been used extensively to explain global biodiversity patterns. Many studies have analyzed diversification rates derived from just two pieces of information: a clade’s age and its extant species richness. This “age-richness rate” (ARR) estimator provides a convenient shortcut for comparative studies, but makes strong assumptions about the dynamics of species richness through time. Here we demonstrate that use of the ARR estimator in comparative studies is problematic on both theoretical and empirical grounds. We prove mathematically that ARR estimates are non-identifiable: there is no information in the data for a single clade that can distinguish a process with positive net diversification from one where net diversification is zero. Using paleontological time series, we demonstrate that the ARR estimator has no predictive ability for real datasets. These pathologies arise because the ARR inference procedure yields “point estimates” that have been computed under a saturated statistical model with zero degrees of freedom. Although ARR estimates remain useful in some contexts, they should be avoided for comparative studies of diversification and species richness.

scholarly journals Diversification rates and the latitudinal gradient of diversity in mammals

2012 ◽  
Vol 279 (1745) ◽  
pp. 4148-4155 ◽  
Author(s):  
Víctor Soria-Carrasco ◽  
Jose Castresana
Keyword(s):  
Species Richness ◽  
Species Distribution ◽  
Phylogenetic Trees ◽  
Latitudinal Gradient ◽  
Diversification Rate ◽  
Independent Contrasts ◽  
Diversification Rates ◽  
Extinction Rates ◽  
Phylogenetically Independent Contrasts ◽  
Distribution Ranges

The latitudinal gradient of species richness has frequently been attributed to higher diversification rates of tropical groups. In order to test this hypothesis for mammals, we used a set of 232 genera taken from a mammalian supertree and, additionally, we reconstructed dated Bayesian phylogenetic trees of 100 genera. For each genus, diversification rate was estimated taking incomplete species sampling into account and latitude was assigned considering the heterogeneity in species distribution ranges. For both datasets, we found that the average diversification rate was similar among all latitudinal bands. Furthermore, when we used phylogenetically independent contrasts, we did not find any significant correlation between latitude and diversification parameters, including different estimates of speciation and extinction rates. Thus, other factors, such as the dynamics of dispersal through time, may be required to explain the latitudinal gradient of diversity in mammals.

Performance of a points-based scoring system for assessing species limits in birds

The Auk ◽  
2021 ◽  
Author(s):  
Joseph A Tobias ◽  
Paul F Donald ◽  
Rob W Martin ◽  
Stuart H M Butchart ◽  
Nigel J Collar
Keyword(s):  
Strong Support ◽  
Molecular Data ◽  
Sympatric Species ◽  
Global Scale ◽  
Training Set ◽  
Species Limits ◽  
Phenotypic Data ◽  
Fast Tracking ◽  
Extinction Rates ◽  
Phenotypic Divergence

AbstractSpecies are fundamental to biology, conservation, and environmental legislation; yet, there is often disagreement on how and where species limits should be drawn. Even sophisticated molecular methods have limitations, particularly in the context of geographically isolated lineages or inadequate sampling of loci. With extinction rates rising, methods are needed to assess species limits rapidly but robustly. Tobias et al. devised a points-based system to compare phenotypic divergence between taxa against the level of divergence in sympatric species, establishing a threshold to guide taxonomic assessments at a global scale. The method has received a mixed reception. To evaluate its performance, we identified 397 novel taxonomic splits from 328 parent taxa made by application of the criteria (in 2014‒2016) and searched for subsequent publications investigating the same taxa with molecular and/or phenotypic data. Only 71 (18%) novel splits from 60 parent taxa have since been investigated by independent studies, suggesting that publication of splits underpinned by the criteria in 2014–2016 accelerated taxonomic decisions by at least 33 years. In the evaluated cases, independent analyses explicitly or implicitly supported species status in 62 (87.3%) of 71 splits, with the level of support increasing to 97.2% when excluding subsequent studies limited only to molecular data, and reaching 100% when the points-based criteria were applied using recommended sample sizes. Despite the fact that the training set used to calibrate the criteria was heavily weighted toward passerines, splits of passerines and non-passerines received equally strong support from independent research. We conclude that the method provides a useful tool for quantifying phenotypic divergence and fast-tracking robust taxonomic decisions at a global scale.

scholarly journals Exploring diversification drivers in golden orbweavers

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Eva Turk ◽  
Simona Kralj-Fišer ◽  
Matjaž Kuntner
Keyword(s):  
Environmental Factors ◽  
Sexual Size Dimorphism ◽  
Male Body ◽  
Diversification Rates ◽  
Size Dimorphism ◽  
Extinction Rates ◽  
Intermediate Phenotypes ◽  
Dispersal Propensity ◽  
The Tropics ◽  
Class Models

AbstractHeterogeneity in species diversity is driven by the dynamics of speciation and extinction, potentially influenced by organismal and environmental factors. Here, we explore macroevolutionary trends on a phylogeny of golden orbweavers (spider family Nephilidae). Our initial inference detects heterogeneity in speciation and extinction, with accelerated extinction rates in the extremely sexually size dimorphic Nephila and accelerated speciation in Herennia, a lineage defined by highly derived, arboricolous webs, and pronounced island endemism. We evaluate potential drivers of this heterogeneity that relate to organisms and their environment. Primarily, we test two continuous organismal factors for correlation with diversification in nephilids: phenotypic extremeness (female and male body length, and sexual size dimorphism as their ratio) and dispersal propensity (through range sizes as a proxy). We predict a bell-shaped relationship between factor values and speciation, with intermediate phenotypes exhibiting highest diversification rates. Analyses using SSE-class models fail to support our two predictions, suggesting that phenotypic extremeness and dispersal propensity cannot explain patterns of nephilid diversification. Furthermore, two environmental factors (tropical versus subtropical and island versus continental species distribution) indicate only marginal support for higher speciation in the tropics. Although our results may be affected by methodological limitations imposed by a relatively small phylogeny, it seems that the tested organismal and environmental factors play little to no role in nephilid diversification. In the phylogeny of golden orbweavers, the recent hypothesis of universal diversification dynamics may be the simplest explanation of macroevolutionary patterns.

scholarly journals Explaining large-scale patterns of vertebrate diversity

2015 ◽  
Vol 11 (7) ◽  
pp. 20150506 ◽  
Author(s):  
John J. Wiens
Keyword(s):  
Species Richness ◽  
Large Scale ◽  
Comparative Methods ◽  
Phylogenetic Comparative Methods ◽  
Metabolic Rates ◽  
Diversification Rates ◽  
Richness Patterns ◽  
Current Species

The major clades of vertebrates differ dramatically in their current species richness, from 2 to more than 32 000 species each, but the causes of this variation remain poorly understood. For example, a previous study noted that vertebrate clades differ in their diversification rates, but did not explain why they differ. Using a time-calibrated phylogeny and phylogenetic comparative methods, I show that most variation in diversification rates among 12 major vertebrate clades has a simple ecological explanation: predominantly terrestrial clades (i.e. birds, mammals, and lizards and snakes) have higher net diversification rates than predominantly aquatic clades (i.e. amphibians, crocodilians, turtles and all fish clades). These differences in diversification rates are then strongly related to patterns of species richness. Habitat may be more important than other potential explanations for richness patterns in vertebrates (such as climate and metabolic rates) and may also help explain patterns of species richness in many other groups of organisms.

scholarly journals Interaction Between Ploidy, Breeding System, and Lineage Diversification

2019 ◽  
Author(s):  
Rosana Zenil-Ferguson ◽  
J. Gordon Burleigh ◽  
William A. Freyman ◽  
Boris Igić ◽  
Itay Mayrose ◽  
...  
Keyword(s):  
Breeding System ◽  
Whole Genome Duplication ◽  
Genome Duplication ◽  
Whole Genome ◽  
Self Incompatibility ◽  
Evolutionary Pathway ◽  
Diversification Rates ◽  
Extinction Rates ◽  
Biological Hierarchy ◽  
Lineage Diversification

AbstractIf particular traits consistently affect rates of speciation and extinction, broad macroevolutionary patterns can be understood as consequences of selection at high levels of the biological hierarchy. Identifying traits associated with diversification rate differences is complicated by the wide variety of characters under consideration and the statistical challenges of testing for associations from comparative phylogenetic data. Ploidy (diploid vs. polyploid states) and breeding system (self-incompatible vs. self-compatible states) have been repeatedly suggested as possible drivers of differential diversification. We investigate the connections of these traits, including their interaction, to speciation and extinction rates in Solanaceae. We show that the effect of ploidy on diversification can be largely explained by its correlation with breeding system and that additional unknown factors, alongside breeding system, influence diversification rates. These results are largely robust to allowing for diploidization. Finally, we find that the most common evolutionary pathway to polyploidy in Solanaceae occurs via direct breakdown of self-incompatibility by whole genome duplication, rather than indirectly via breakdown followed by polyploidization.

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